VIRsiRNAdb

SpecificityServer - An siRNA design program for determining siRNA specificity
Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

25 hits were found for CCCGUCUGUGCCUUCUCAU (14 guide strand hits and 11 sense strand hits.)

Hits to Guide strand

Accession

Gene

Start

End

Details of mismatches

Spec. Score

Mismatches

Contiguous

Jackson style specificity

Hits similar gene

HSP Score

HSP % Identity

HSP length

Gene Length

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

NM_001080436

WTIP

1454

1472

a

C

C

G

U

C

U

G

U

G

C

C

U

g

C

U

C

A

a

73

3

12

c

false

<90%

2204

XM_939855

WTIP

2384

2402

a

C

C

G

U

C

U

G

U

G

C

C

U

g

C

U

C

A

a

73

3

12

c

false

<90%

3134

NM_024870

DEPDC2

3847

3865

a

C

u

G

U

C

U

G

U

G

C

C

U

U

C

U

C

u

g

70

4

14

c

false

<90%

5132

NM_152599

FLJ35773

338

356

C

C

C

G

U

C

U

G

U

G

C

C

U

U

C

c

u

g

g

42

4

15

c

false

<90%

2151

NM_032491

RFX4

1885

1903

C

C

C

G

U

C

U

G

U

G

C

a

U

U

C

U

g

c

g

35

4

11

false

<90%

3381

NM_213594

RFX4

2127

2145

C

C

C

G

U

C

U

G

U

G

C

a

U

U

C

U

g

c

g

35

4

11

false

<90%

3623

NM_001001661

ZNF425

2205

2223

C

C

C

a

U

C

U

G

U

G

C

C

U

U

C

a

C

A

g

32

3

11

c

false

<90%

3184

NM_001032395

GPR126

2718

2736

C

C

C

a

U

C

U

G

U

G

C

C

U

U

C

U

g

g

g

32

4

12

c

false

<90%

6818

NM_001032394

GPR126

2718

2736

C

C

C

a

U

C

U

G

U

G

C

C

U

U

C

U

g

g

g

32

4

12

c

false

<90%

6864

NM_198569

GPR126

2802

2820

C

C

C

a

U

C

U

G

U

G

C

C

U

U

C

U

g

g

g

32

4

12

c

false

<90%

6902

NM_020455

GPR126

2802

2820

C

C

C

a

U

C

U

G

U

G

C

C

U

U

C

U

g

g

g

32

4

12

c

false

<90%

6948

NM_025090

USP36

4494

4512

C

C

a

G

g

C

U

G

U

G

C

C

U

U

C

U

C

A

U

28

2

14

bc

false

<90%

5234

XM_001131346

LOC731941

1143

1161

u

C

u

G

U

C

U

u

U

G

C

C

U

U

C

U

C

A

U

16

3

11

bc

false

<90%

2044

NM_024067

C7orf26

1356

1374

C

C

C

G

U

g

U

G

U

G

C

C

U

U

C

U

g

c

g

5

4

10

c

false

<90%

1913

Hits to Sense strand

Accession

Gene

Start

End

Details of mismatches

Spec. Score

Mismatches

Contiguous

Jackson style specificity

Hits similar gene

HSP Score

HSP % Identity

HSP length

Gene Length

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

NM_079834

SCAMP4

658

676

u

c

c

A

G

A

A

G

G

C

A

C

A

G

A

C

G

G

a

62

4

15

bc

false

<90%

2548

NM_152888

COL22A1

3873

3891

g

a

G

A

G

A

A

G

G

C

A

C

A

G

A

a

G

G

G

60

3

13

c

false

<90%

6366

XM_001128037

LOC728654

95

113

A

U

G

A

G

A

A

G

G

C

A

C

A

G

c

C

c

a

G

49

3

14

c

false

<90%

584

XM_001129553

LOC731413

95

113

A

U

G

A

G

A

A

G

G

C

A

C

A

G

c

C

c

a

G

49

3

14

c

false

<90%

584

NM_015075

IQSEC2

665

683

A

U

G

A

G

A

A

G

G

C

A

C

A

G

A

a

c

c

c

42

4

15

c

false

<90%

5248

XM_001132803

LOC730175

156

174

A

U

G

A

G

A

A

G

G

C

A

g

A

G

A

C

c

u

u

35

4

11

false

<90%

216

XM_001131623

LOC732020

156

174

A

U

G

A

G

A

A

G

G

C

A

g

A

G

A

C

c

u

u

35

4

11

false

<90%

216

NM_020198

CCDC47

1101

1119

g

g

G

A

G

A

A

G

u

C

A

C

A

G

A

C

G

G

a

21

4

9

bc

false

<90%

3294

NM_020901

KIAA1542

280

298

u

g

G

A

G

A

u

G

G

C

A

C

A

G

A

C

G

G

a

15

4

11

bc

false

<90%

5521

NM_007085

FSTL1

1007

1025

A

U

G

A

G

g

A

G

G

C

A

C

A

G

A

C

c

a

G

10

3

10

c

false

<90%

3705

XM_001127227

LOC728331

678

696

g

g

a

A

G

A

g

G

G

C

A

C

A

G

A

C

G

G

G

0

4

12

bc

false

<90%

711

---

3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1225
View matched accessions

3 prime seed match details

Accession	Gene name	Hits to this gene
NM_173832	ZFP41	7
XM_001131828	BBS5	6
XM_001131846	BBS5	6
NM_152384	BBS5	5
NM_022158	FN3K	4
NM_001007024	GOSR1	4
NM_001007025	GOSR1	4
NM_004871	GOSR1	4
XM_941026	ING5	3
XM_001126273	LOC727773	3
NM_032329	ING5	3
NM_182612	PDDC1	3
NM_145762	GFRA4	2
NM_022139	GFRA4	2
NM_004992	MECP2	2
NM_182515	ZNF714	2
NM_004273	CHST3	2
NM_133443	GPT2	2
NM_018023	YEATS2	2
NM_031886	KCNA7	2
NM_001102371		2
NM_024955	FOXRED2	2
NM_007032	TRIOBP	2
NM_001039141	TRIOBP	2
NM_001003406	CACNA1I	2
NM_021096	CACNA1I	2
NM_001012659	ARGFX	2
NM_001013693	LDLRAD2	2
NM_032017	STK40	2
NM_005937	MLLT6	2
NM_022340	ZFYVE20	2
NM_015075	IQSEC2	2
NM_032753	RAXL1	2
NM_015326	SRGAP2	2
NM_014757	MAML1	2
XM_001126853	MAML1	2
NM_198488	FAM83H	2
NM_032109	OTP	2
NM_006206	PDGFRA	2
NM_024963	FBXL18	2
NM_001848	COL6A1	2
NM_020910		2
NM_016183	MRTO4	2
NM_019089	HES2	2
NM_144973	MGC24039	2
NM_001167	BIRC4	2
XM_927226	LOC642921	2
NM_024866	ADM2	2
NM_003929	RAB7L1	2
NM_177538	CYP20A1	2
NM_005817	M6PRBP1	2
NM_019067	GNL3L	2
NM_152529	GPR155	2
NM_001033045	GPR155	2
NM_032316	NICN1	2
NM_152263	TPM3	2
NM_138458	LOC116143	2
NM_001039570	KREMEN1	2
NM_001039571	KREMEN1	2
NM_022473	ZFP106	2
NM_015074	KIF1B	2
NM_025136	OPA3	2
NM_000202	IDS	2
NM_032102	SFRS2B	2
NM_001040441	ZBTB8	2
XM_001124597	LOC730411	2
NM_005160	ADRBK2	2
XM_001130036	LOC730815	2
XM_001132008	LOC728769	2
NM_032121	DKFZp564K142	2
NM_015375	RIPK5	2
NM_199462	RIPK5	2
NM_130807	MOBKL2A	2
NM_006371	CRTAP	2
NM_000602	SERPINE1	2
NM_020939	CPNE5	2
NM_002501	NFIX	2
NM_031454	SELO	2
NM_152744	SDK1	2
XM_933796	SLC45A4	2
NM_000683	ADRA2C	2
NM_023076	C16orf28	2
NM_152419		2
NM_015264	C22orf9	2
NM_001009880	C22orf9	2
NM_002315	LMO1	2
NM_004091	E2F2	2
NM_020655	JPH3	2
NM_007220	CA5B	2
NM_001039792	LOC646962	2
NM_001100390		1
NM_152558	IQCE	1
NM_001829	CLCN3	1
NM_173872	CLCN3	1
NM_004309	ARHGDIA	1
NM_182970	RIMS4	1
NM_033512	TSPYL5	1
NM_138635	H2AFV	1
NM_003970	MYOM2	1
NM_002746	MAPK3	1
NM_001109891		1
NM_001040056	MAPK3	1
NM_001099693		1
NM_003557	PIP5K1A	1
NM_173598	KSR2	1
NM_003808	TNFSF13	1
NM_172088	TNFSF13	1
NM_172087	TNFSF13	1
NM_172089	TNFSF12-TNFSF13	1
NM_144666	DNHD1	1
NM_001037293	PALM2	1
NM_053016	PALM2	1
NM_001527	HDAC2	1
NM_015892	GALNAC4S-6ST	1
NM_014341	MTCH1	1
NM_014631	SH3PXD2A	1
NM_018411	HR	1
NM_005144	HR	1
NM_015094	HIC2	1
NM_001009984		1
NM_001619	ADRBK1	1
NM_012310	KIF4A	1
NM_021241		1
NM_000530	MPZ	1
NM_015359	SLC39A14	1
NM_023009	MARCKSL1	1
NM_007368	RASA3	1
NM_020443	NAV1	1
NM_001001684	FLJ45831	1
XM_001132907	LOC730202	1
XM_001131136	LOC731887	1
NM_032855	HSH2D	1
NM_002874	RAD23B	1
NM_001105205		1
NM_001105204		1
NM_001105203		1
NM_014328	RUSC1	1
NM_000929	PLA2G5	1
NM_001102658		1
NM_014987		1
NM_001039132	ICAM4	1
NM_001544	ICAM4	1
NM_022377	ICAM4	1
NM_031309	SCRT1	1
NM_001627	ALCAM	1
NM_000813	GABRB2	1
NM_021911	GABRB2	1
NM_176871	PDLIM2	1
NM_014412	CACYBP	1
NM_001007214	CACYBP	1
NM_007167	ZMYM6	1
NM_002855	PVRL1	1
XM_928252	LOC645212	1
XM_939117	LOC645212	1
NM_032374	C14orf153	1
NM_006282	STK4	1
NM_198179	GPR103	1
NM_001080125	CASP8	1
NM_001080124	CASP8	1
NM_033355	CASP8	1
NM_001228	CASP8	1
NM_033356	CASP8	1
NM_001030060	SAMD5	1
NM_006918	SC5DL	1
NM_001024956	SC5DL	1
NM_012101	TRIM29	1
NM_033315	RASL10B	1
NM_001077484	SLC38A1	1
NM_030674	SLC38A1	1
NM_000092	COL4A4	1
XM_375443	LOC284100	1
NM_032389	ZNF289	1
NM_015316	PPP1R13B	1
NM_015170	SULF1	1
NM_003108	SOX11	1
XM_001130518	LOC728485	1
XM_001133894	LOC731964	1
NM_003724	JRK	1
NM_001099285		1
NM_002823	PTMA	1
XM_941283	LOC643287	1
XM_945078	LOC643287	1
XM_928075	LOC643287	1
XM_932585	LOC643287	1
NM_001006623	WDR33	1
NM_022749	RAI16	1
XM_001125753	MUC3B	1
NM_013401	RAB3IL1	1
NM_024628	SLC12A8	1
NM_153712	TTL	1
NM_145798	OSBPL7	1
NM_032233	SETD3	1
NM_023942	LRRC61	1
NM_020126	SPHK2	1
NM_004405	DLX2	1
XM_001130904	LOC730959	1
XM_001128800	LOC728351	1
XM_001129857	PDDC1	1
XM_001129876	PDDC1	1
NM_005036	PPARA	1
NM_001001928	PPARA	1
NM_207115	ZNF580	1
NM_016202	ZNF580	1
NM_181798	KCNQ1	1
NM_000218	KCNQ1	1
NM_078467	CDKN1A	1
NM_000389	CDKN1A	1
NM_138814	PNPLA5	1
NM_005547	IVL	1
NM_002055	GFAP	1
NM_152475	ZNF417	1
NM_017575	SMG6	1
NM_004938	DAPK1	1
NM_004778	GPR44	1
NM_000451	SHOX	1
NM_032933	C18orf45	1
NM_181722	LOC285908	1
NM_001001666	TMEM16G	1
NM_005281	GPR3	1
NM_006037	HDAC4	1
NM_016196	RBM19	1
XM_001134334	RBM19	1
NM_130466	UBE3B	1
NM_183415	UBE3B	1
NM_080539	COLQ	1
NM_080538	COLQ	1
NM_005677	COLQ	1
NM_080541	COLQ	1
NM_019008	SMCR7L	1
NM_015434	INTS7	1
NM_032449	CC2D1B	1
NM_133264	WIPF2	1
NM_080657	RSAD2	1
NM_024506	GLB1L	1
XM_932619	LOC286411	1
XM_942964	LOC286411	1
NM_033405	PRIC285	1
NM_001037335	PRIC285	1
NM_198887	NUP43	1
NM_022103	ZNF667	1
NM_016400	HYPK	1
NM_004941	DHX8	1
NM_020761	KIAA1303	1
XM_939919	LOC650832	1
NM_002756	MAP2K3	1
NM_145109	MAP2K3	1
NM_030923	TMEM163	1
NM_015103	PLXND1	1
NM_001004342	TRIM67	1
NM_015691	WWC3	1
NM_000486	AQP2	1
NM_203307	ZNF321	1
NM_153611	CYBASC3	1
NM_012474	UCK2	1
NM_003624	RANBP3	1
NM_019892	INPP5E	1
NM_014697	NOS1AP	1
NM_001455	FOXO3A	1
NM_201559	FOXO3A	1
NM_032193	RNASEH2C	1
NM_003221	TFAP2B	1
NM_016250	NDRG2	1
NM_201538	NDRG2	1
NM_201537	NDRG2	1
NM_201536	NDRG2	1
NM_201535	NDRG2	1
NM_201540	NDRG2	1
NM_201539	NDRG2	1
NM_201541	NDRG2	1
NM_016224	SNX9	1
NM_012448	STAT5B	1
NM_145754	KIFC2	1
NM_006328	RBM14	1
XM_941142	FTO	1
NM_001080432	FTO	1
NM_022338	C11orf24	1
NM_021973	HAND2	1
NM_001045478	LOC644997	1
NM_005550	KIFC3	1
NM_001453	FOXC1	1
NM_130853	PTPRS	1
NM_002850	PTPRS	1
NM_130855	PTPRS	1
NM_130854	PTPRS	1
NM_013336	SEC61A1	1
NM_203434	IER5L	1
NM_201412	LUC7L	1
NM_018032	LUC7L	1
NM_018265	C1orf106	1
NM_207582	HERV-FRD	1
NM_020064	BARHL1	1
NM_003165	STXBP1	1
NM_001032221	STXBP1	1
NM_003658	BARX2	1
NM_005558	LAD1	1
XM_001134298	LAD1	1
NM_015168	C19orf7	1
NM_004145	MYO9B	1
NM_033020	TRIM33	1
NM_015906	TRIM33	1
NM_014623	MEA1	1
NM_000780	CYP7A1	1
NM_080833	C20orf151	1
NM_013301	CCDC106	1
XM_001131943	LOC729979	1
XM_001128763	LOC731188	1
NM_022350	LRAP	1
NM_198075	LRRC56	1
NM_019613	WDR45L	1
NM_030913	SEMA6C	1
XM_001130949	LOC158376	1
XM_001129749	LOC158376	1
NM_004588	SCN2B	1
NM_004200	SYT7	1
XM_943686	SYT7	1
NM_080747	KRT72	1
NM_015493	ANKRD25	1
NM_019854	PRMT8	1
NM_024619	FN3KRP	1
NM_004359	CDC34	1
NM_019884	GSK3A	1
NM_006192	PAX1	1
XM_001131899	LOC283904	1
NM_178564	NRBP2	1
NM_001003715	RECQL5	1
NM_001003716	RECQL5	1
NM_004395	DBN1	1
NM_080881	DBN1	1
XM_001130364	LOC728417	1
XM_001130184	LOC730843	1
NM_014690	FAM131B	1
NM_001031690	FAM131B	1
NM_003369	UVRAG	1
NM_001007139	IGF2	1
NM_000612	IGF2	1
NM_018273	TMEM143	1
NM_005098	MSC	1
NM_178120	DLX1	1
NM_001038493	DLX1	1
XM_001133381	LOC730259	1
NM_080603	ZSWIM1	1
NM_001011708	GTPBP9	1
NM_013341	GTPBP9	1
NM_178554	KY	1
NM_014911	AAK1	1
NM_014819	PJA2	1
NM_005934	MLLT1	1
NM_033420	C19orf6	1
NM_175895	C12orf61	1
NM_012227	GTPBP6	1
NM_147192	DMBX1	1
NM_172225	DMBX1	1
NM_145298	APOBEC3F	1
NM_181644	MFSD4	1
NM_003359	UGDH	1
NM_178422	PAQR7	1
NM_144628	TBC1D20	1
NM_004914	RAB36	1
NM_032828	ZNF587	1
NM_005540	INPP5B	1
XM_001132013	ANKH	1
NM_006464	TGOLN2	1
NM_033064	ATCAY	1
NM_018141	MRPS10	1
NM_003082	SNAPC1	1
NM_001098398		1
NM_004371	COPA	1
NM_207335	KLHDC6	1
NM_001109689		1
NM_021061	ZNF250	1
NM_002187	IL12B	1
NM_002006	FGF2	1
NM_007198	PROSC	1
XM_932529	LOC644949	1
XM_943887	LOC644949	1
NM_058180	C21orf58	1
NM_198924	TRIM73	1
NM_198853	TRIM74	1
XM_351723	LOC375593	1
XM_353628	LOC378125	1
NM_018243	SEPT11	1
NM_012323	MAFF	1
NM_152878	MAFF	1
NM_003763	STX16	1
NM_001001433	STX16	1
NM_022048	CSNK1G1	1
NM_006166	NFYB	1
NM_175924	ILDR1	1
NM_017621	ALKBH4	1
NM_016065	MRPS16	1
NM_006952	UPK1B	1
NM_173607	C14orf24	1
NM_001079519	C14orf24	1
NM_024081	PRRG4	1
NM_003733	OASL	1
NM_198213	OASL	1
NM_014719	KIAA0738	1
NM_007362	NCBP2	1
NM_001042540	NCBP2	1
NM_001638	APOF	1
NM_002645	PIK3C2A	1
NM_007055	POLR3A	1
NM_138801	GALM	1
NM_181712	ANKRD38	1
NM_018332	DDX19A	1
NM_152586	USP54	1
NM_182752	FAM79A	1
NM_023947	CHID1	1
NM_014586	HUNK	1
NM_182610	SAMD7	1
NM_002867	RAB3B	1
NM_030776	ZBP1	1
NM_001012729	DUXA	1
NM_032160	DSEL	1
NM_213566	DFFA	1
NM_001083615	MYO3B	1
NM_138995	MYO3B	1
NM_138464		1
NM_152913	TMEM130	1
NM_001047605	KIR3DX1	1
NM_019099	C1orf183	1
NM_198926	C1orf183	1
NM_017585	SLC2A6	1
NM_030626	LRRC27	1
NM_005516	HLA-E	1
NM_005975	PTK6	1
NM_004586	RPS6KA3	1
NM_001002814	RAB11FIP1	1
NM_001024843	TNRC6B	1
NM_015088	TNRC6B	1
NM_015891	CDC40	1
NM_001080497	MEGF9	1
XM_936860	MEGF9	1
NM_197956	C9orf90	1
NM_000230	LEP	1
NM_152673	MUC20	1
NM_001098516		1
NM_004863	SPTLC2	1
NM_000724	CACNB2	1
NM_201596	CACNB2	1
NM_201571	CACNB2	1
NM_201593	CACNB2	1
NM_201590	CACNB2	1
NM_201572	CACNB2	1
NM_201597	CACNB2	1
NM_201570	CACNB2	1
NM_019079	L1TD1	1
NM_024780	TMC5	1
NM_001105249		1
NM_001105248		1
NM_194285	SPTY2D1	1
NM_006197	PCM1	1
NM_032530		1
NM_018712	ELMOD1	1
NM_002086	GRB2	1
NM_203506	GRB2	1
NM_001001415	ZNF429	1
NM_175066	DDX51	1
NM_006873	STON1	1
NM_018128	TSR1	1
NM_021116	ADCY1	1
NM_000139	MS4A2	1
XM_001129158	LIMS1	1
NM_001099678		1
NM_001024215	FBLIM1	1
NM_153608	ZNF114	1
XM_938924	LOC644092	1
XM_001130314	LOC644092	1
NM_170740	ALDH5A1	1
NM_001080	ALDH5A1	1
NM_001024844	CD82	1
NM_002231	CD82	1
NM_004363	CEACAM5	1
NM_012405	ICMT	1
NM_001017392	SFRS14	1
NM_000367	TPMT	1
NM_018385	LSG1	1
NM_015666	GTPBP5	1
NM_001017916	CYB561	1
NM_001915	CYB561	1
NM_001017917	CYB561	1
NM_173562	KCTD20	1
NM_006864	LILRB3	1
NM_001081450	LILRB3	1
NM_018085	IPO9	1
NM_178582	HM13	1
NM_205846	PRELID2	1
NM_138492	PRELID2	1
NM_182960	PRELID2	1
NM_052928	SMYD4	1
NM_001233	CAV2	1
NM_198212	CAV2	1
NM_007047	BTN3A2	1
NM_002098	GUCA1B	1
NM_152269	C12orf65	1
XM_001134327	LOC732324	1
XM_001134208	LOC729975	1
NM_005989	AKR1D1	1
NM_138468	ICA1L	1
NM_030954	RNF170	1
NM_173569		1
NM_001031683	IFIT3	1
NM_001549	IFIT3	1
NM_145343	APOL1	1
NM_003661	APOL1	1
NM_001944	DSG3	1
NM_014736	KIAA0101	1
NM_001029989	KIAA0101	1
NM_012431	SEMA3E	1
NM_000527	LDLR	1
NM_001012339	DNAJA5	1
NM_194283	DNAJA5	1
XM_498578	C14orf82	1
XM_944991	C14orf82	1
NM_182762	7A5	1
NM_031208	FAHD1	1
NM_139159	DPP9	1
NM_015071	ARHGAP26	1
NM_198196	CD96	1
NM_005816	CD96	1
NM_000437	PAFAH2	1
NM_000112	SLC26A2	1
NM_178128	FADS6	1
NM_001013649	LOC388969	1
NM_153338	GGT6	1
NM_052916	RNF157	1
NM_017658	KLHL28	1
NM_024804	ZNF669	1
NM_004901	ENTPD4	1
NM_005476	GNE	1
NM_133444	ZNF526	1
NM_001039199	C20orf121	1
NM_024331	C20orf121	1
NM_181425	FXN	1
NM_000144	FXN	1
NM_024646	ZYG11B	1
NM_015431	TRIM58	1
NM_032333	C10orf58	1
NM_022483	C5orf28	1
NM_144618	MGC29891	1
NM_015562		1
NM_016123	IRAK4	1
NM_004729	ZBED1	1
NM_003657	BCAS1	1
NM_153705	KDELC2	1
NM_005957	MTHFR	1
XM_930505	LOC645676	1
XM_941520	LOC645676	1
NM_004719	SFRS2IP	1
NM_018292	QRSL1	1
NM_001081461	JMJD6	1
NM_198549	FAM73A	1
NM_201280	MUTED	1
NM_130446	KLHL6	1
NM_145202	PRAP1	1
NM_052941	GBP4	1
NM_005338	HIP1	1
NM_000572	IL10	1
NM_001859	SLC31A1	1
NM_173547	TRIM65	1
NM_152362	TNFAIP8L1	1
NM_018409	LRP2BP	1
NM_005466	MED6	1
NM_199461	NANOS1	1
NM_015473		1
NM_138572	TBN	1
NM_001030010	ALDH3B1	1
NM_000694	ALDH3B1	1
NM_022774	C1orf176	1
NM_145912	NFAM1	1
NM_173811	C11orf77	1
NM_021915	ZNF69	1
NM_001079529	LOC202134	1
NM_002908	REL	1
NM_016056	TMBIM4	1
NM_018945	PDE7B	1
NM_001013659	ZNF793	1
NM_033130	SIGLEC10	1
NM_024095	ASB8	1
NM_022777	RABL5	1
NM_152903	KBTBD6	1
NM_021167	GATAD1	1
NM_015602	TOR1AIP1	1
NM_001079685	KIAA1191	1
NM_020444	KIAA1191	1
NM_001079684	KIAA1191	1
NM_018706	DHTKD1	1
XM_001133595	LOC729324	1
XM_001133813	LOC731757	1
NM_021035	ZNFX1	1
NM_001033659	FLJ35848	1
NM_001014342	FLG2	1
NM_025152	NUBPL	1
NM_020117	LARS	1
NM_032899	FAM83A	1
NM_153718	NUP62	1
NM_012346	NUP62	1
NM_153719	NUP62	1
NM_016553	NUP62	1
XM_001131014	LOC729683	1
XM_001130799	LOC731783	1
XM_001126406	LOC727922	1
XM_001126391	LOC727922	1
XM_001126417	LOC727922	1
NM_054016	FUSIP1	1
NM_001040701	FUT6	1
NM_000150	FUT6	1
NM_014875	KIF14	1
NM_024318	LILRA6	1
NM_152357		1
NM_001085368		1
NM_001009960	ZNF655	1
NM_001083956		1
NM_138494	ZNF655	1
NM_014899	RHOBTB3	1
NM_001077706	LFDH	1
NM_197964	HSPC268	1
NM_181705	LYRM7	1
NM_207111	TRIAD3	1
NM_207116	TRIAD3	1
NM_024798	SNX22	1
NM_032453		1
NM_001098199		1
NM_005279	GPR1	1
XM_371176	FLJ41856	1
XM_941062	FLJ41856	1
NM_001099407		1
NM_001033578	SGK3	1
NM_013257	SGK3	1
NM_170709	SGK3	1
NM_175871	C19orf39	1
NM_080656	MGC13017	1
NM_198445	FLJ45909	1
NM_203422	LOC221091	1
NM_145039	MGC16385	1
NM_153697	ANKRD44	1
NM_018379	FAM63A	1
NM_001040217	FAM63A	1
NM_013276	CARKL	1
XM_379623	FLJ41200	1
XM_943473	FLJ41200	1
NM_013432	NFKBIL2	1
NM_005497	GJA7	1
NM_001080383	GJA7	1
NM_007107	SSR3	1
NM_021623		1
NM_001031679	MSRB3	1
NM_198080	MSRB3	1
NM_033224	PURB	1
NM_032718	MFSD9	1
NM_001042508	LOC653483	1
NM_000441	SLC26A4	1
NM_001039693	FLJ37953	1
NM_025104	DBF4B	1
NM_033107	GTPBP10	1
NM_001042717	GTPBP10	1
NM_133456	SHROOM1	1
NM_005158	ABL2	1
NM_007314	ABL2	1
NM_001100108		1
XM_001128660	LOC728866	1
NM_000745	CHRNA5	1
NM_178820	FBXO27	1
NM_001226	CASP6	1
NM_032992	CASP6	1
NM_001992	F2R	1
NM_019604	CRTAM	1
NM_015506	MMACHC	1
NM_145207	SPATA5	1
NM_139276	STAT3	1
NM_003150	STAT3	1
NM_213662	STAT3	1
NM_016436	PHF20	1
NM_198993	STAC2	1
NM_033109	PNPT1	1
XM_001133026	LOC731386	1
XM_001133204	LOC729120	1
NM_002725	PRELP	1
NM_201348	PRELP	1
NM_052858	MARVELD3	1
NM_024674	LIN28	1
NM_012425	RSU1	1
NM_152724	RSU1	1
NM_152569	C9orf66	1
NM_018068	PIWIL2	1
XM_001127604	NFATC2IP	1
NM_032815	NFATC2IP	1
NM_000349	STAR	1
NM_001007243	STAR	1
NM_018561	USP49	1
XM_934649	C1orf34	1
XM_945958	C1orf34	1
NM_003439	ZKSCAN1	1
NM_001083625	ANKRD12	1
NM_015208	ANKRD12	1
NM_000961	PTGIS	1
NM_017693	BIVM	1
XM_001132559	LOC732290	1
XM_001128665	LOC728869	1
NM_133478	SLC4A5	1
NM_181725	METTL2A	1
NM_001005372	METTL2A	1
NM_018396	METTL2B	1
NM_004212	SLC28A2	1
NM_144670	A2ML1	1
NM_024026	MRP63	1
NM_080821	C20orf108	1
NM_012388	PLDN	1
NM_152850	PIGO	1
NM_032634	PIGO	1
NM_001032283	TMPO	1
NM_153257	GIOT-1	1
NM_001032284	TMPO	1
NM_024086	METT10D	1
NM_004035	ACOX1	1
NM_007292	ACOX1	1
XM_001129292	MBOAT2	1
NM_138799	MBOAT2	1
NM_000890	KCNJ5	1
NM_138788	TMEM45B	1
NM_002035	FVT1	1
XM_934619	LOC284577	1
XM_945015	LOC284577	1
NM_001040436	YARS2	1
NM_024967	ZNF556	1
NM_004845	PCYT1B	1
NM_002856	PVRL2	1
NM_001039717	C4orf29	1
NM_182746	MCM4	1
NM_005914	MCM4	1
NM_017958	PLEKHB2	1
NM_001100623		1
NM_004875	POLR1C	1
NM_020823		1
NM_033393	KIAA1727	1
NM_016068	FIS1	1
NM_138400	NOM1	1
NM_012315	KLK9	1
NM_015265	SATB2	1
NM_006373	VAT1	1
XM_001125792	LOC727834	1
XM_926013	LOC642398	1
NM_198271	LMOD3	1
NM_018177	N4BP2	1
XM_001127950	LOC730566	1
XM_001133333	LOC729172	1
NM_001204	BMPR2	1
NM_001039887	C19orf55	1
NM_138706	B3GNT6	1
NM_024301	FKRP	1
NM_001039885	FKRP	1
NM_001386	DPYSL2	1
NM_080605	B3GALT6	1
NM_017784	OSBPL10	1
NM_016016	SLC25A39	1
NM_133452	RAVER1	1
NM_001139	ALOX12B	1
NM_175888	ZNF620	1
NM_002959	SORT1	1
NM_001005463	EBF3	1
XM_001131352	CRTAP	1
NM_000445	PLEC1	1
NM_201379	PLEC1	1
NM_201382	PLEC1	1
NM_201383	PLEC1	1
NM_201380	PLEC1	1
NM_201381	PLEC1	1
NM_201384	PLEC1	1
NM_201378	PLEC1	1
NM_198990	NAPE-PLD	1
NM_173833	SCARA5	1
NM_199454	PRDM16	1
NM_022114	PRDM16	1
NM_004230	EDG5	1
NM_014826	CDC42BPA	1
NM_003607	CDC42BPA	1
NM_138382		1
NM_004383	CSK	1
XM_927470	LOC644297	1
NM_001206	KLF9	1
NM_139057	ADAMTS17	1
NM_004823	KCNK6	1
NM_004210	NEURL	1
NM_002602	PDE6G	1
NM_001088	AANAT	1
XM_377073	LOC376475	1
NM_003644	GAS7	1
NM_201432	GAS7	1
NM_201433	GAS7	1
XM_943571	LOC646916	1
XM_379029	LOC400879	1
NM_033131	WNT3A	1
NM_172002	HSCB	1
NM_015603	CCDC9	1
NM_020211	RGMA	1
NM_152678	FAM116A	1
NM_022162	NOD2	1
XM_001133301	LOC729008	1
NM_153339	PUSL1	1
NM_012267	HSPBP1	1
NM_014603	CDR2L	1
NM_032727	INA	1
NM_019046	ANKRD16	1
NM_182831	TNT	1
NM_080744	SRCRB4D	1
NM_003913	PRPF4B	1
NM_000918	P4HB	1
NM_178493	NOTUM	1
NM_006731	FCMD	1
NM_001079802	FCMD	1
NM_004804	CIAO1	1
NM_005336	HDLBP	1
NM_203346	HDLBP	1
NM_002737	PRKCA	1
NM_033170	B3GALT5	1
NM_033173	B3GALT5	1
NM_033171	B3GALT5	1
NM_006057	B3GALT5	1
NM_033172	B3GALT5	1
NM_015949	C7orf20	1
NM_000334	SCN4A	1
NM_018156	VPS13D	1
NM_015378	VPS13D	1
NM_015099	CAMTA2	1
XM_001126893	LOC728218	1
NM_025159	CXorf21	1
NM_080836	STK35	1
NM_014942	ANKRD6	1
NM_002523	NPTX2	1
NM_003791	MBTPS1	1
XM_944850	SLC45A4	1
NM_001080431	SLC45A4	1
NM_022080	NAPB	1
NM_194452	RNF121	1
NM_194453	RNF121	1
NM_018320	RNF121	1
NM_014455	ZNF364	1
XM_001130238	LOC728283	1
XM_001132687	LOC731087	1
XM_001133059	LOC728772	1
XM_001133074	LOC728772	1
XM_001133066	LOC728772	1
NM_145041	TMEM106A	1
NM_213649	SFXN4	1
NM_001006616	TSPAN17	1
NM_012171	TSPAN17	1
NM_130465	TSPAN17	1
NM_006688	C1QL1	1
NM_000278	PAX2	1
NM_003987	PAX2	1
NM_003988	PAX2	1
NM_006293	TYRO3	1
NM_138418	C16orf14	1
NM_213596	FOXN4	1
NM_006067	COX4NB	1
NM_002531	NTSR1	1
NM_014715	RICS	1
NM_030808	NDEL1	1
NM_001025579	NDEL1	1
NM_032800	C1orf198	1
NM_032826	SLC35B4	1
NM_012384	GMEB2	1
NM_016579	CD320	1
NM_015426	WDR51A	1
NM_015330	SPECC1L	1
NM_003714	STC2	1
NM_174934	SCN4B	1
NM_006228	PNOC	1
NM_020708	SLC12A5	1
XM_936831	IQSEC3	1
NM_022006	FXYD7	1
XM_001125679	LOC727756	1
NM_014049	ACAD9	1
NM_014714	IFT140	1
NM_212467	CAPN3	1
NM_172367	TUSC5	1
NM_016459	MGC29506	1
NM_000774	CYP2F1	1
XM_001131525	LOC731992	1
NM_001007546	FLJ46838	1
NM_080797	DIDO1	1
NM_139278	LGI3	1
NM_022459	XPO4	1
NM_022720	DGCR8	1
NM_153335	LYK5	1
NM_015351		1
XM_001130955	LOC730347	1
XM_001127355	LOC728377	1
NM_016263	FZR1	1
NM_020147	THAP10	1
NM_007326	CYB5R3	1
NM_000398	CYB5R3	1
NM_002084	GPX3	1
NM_020528	PCBP3	1
NM_001080530	LOC92017	1
NM_014767	SPOCK2	1
NM_000832	GRIN1	1
NM_007327	GRIN1	1
NM_021569	GRIN1	1
NM_015488	PNKD	1
NM_022572	PNKD	1
NM_152219	GJC1	1
NM_020170	NCLN	1
NM_024876	ADCK4	1
NM_013399	C16orf5	1
NM_005189	CBX2	1
NM_000841	GRM4	1
NM_024807	TREML2	1
NM_024085	ATG9A	1
NM_001077198	ATG9A	1
NM_206595	ESRRG	1
NM_001438	ESRRG	1
NM_206594	ESRRG	1
NM_001039803	CCRK	1
NM_178432	CCRK	1
NM_012119	CCRK	1
NM_030657	LIM2	1
NM_005993	TBCD	1
NM_015395	DKFZP434B0335	1
XM_001134414	C1orf133	1
XM_001134416	C1orf133	1
NM_005027	PIK3R2	1
NM_001081491	NXF1	1
NM_003685	KHSRP	1
NM_005370	RAB8A	1
NM_144685	HIPK4	1
NM_002163	IRF8	1
NM_152253	CHKB	1
NM_001080421	UNC13A	1
NM_153280	UBE1	1
NM_003334	UBE1	1
NM_002547	OPHN1	1
NM_012445	SPON2	1
NM_003458	BSN	1
NM_012317	LDOC1	1
NM_138493	C6orf129	1
NM_000557	GDF5	1
NM_014704	KIAA0562	1
NM_172000	TEDDM1	1
NM_014374	REPIN1	1
NM_001099696		1
NM_013400	REPIN1	1
NM_001099695		1
NM_032803	SLC7A3	1
NM_001048164	SLC7A3	1
NM_003784	SERPINB7	1
NM_001040147	SERPINB7	1
NM_020705	TBC1D24	1
NM_018622	PARL	1
NM_001037639	PARL	1
NM_025106	SPSB1	1
NM_013443	ST6GALNAC6	1
NM_001144	AMFR	1
NM_001111019		1
NM_145117	NAV2	1
NM_182964	NAV2	1
NM_001111018		1
NM_024900	PHF17	1
NM_001113239		1
NM_022740	HIPK2	1
NM_032853	MUM1	1
NM_017877	C2orf18	1
NM_001010917	C10orf132	1
NM_005624	CCL25	1
NM_199287		1
NM_005169	PHOX2A	1
NM_021135	RPS6KA2	1
NM_001006932	RPS6KA2	1
NM_001018000	KIAA1026	1
NM_001017999	KIAA1026	1
NM_001018001	KIAA1026	1
NM_015209	KIAA1026	1
XM_065166	KIAA1957	1
XM_939576	KIAA1957	1
NM_001664	RHOA	1
NM_004628	XPC	1
NM_052909	KIAA1909	1
XM_936101	LOC642031	1
NM_012429	SEC14L2	1
NM_052970	HSPA12B	1
NM_019044	CCDC93	1
NM_016486	TMEM69	1
NM_001103161		1
NM_001103160		1
NM_014806	RUSC2	1
NM_017514	PLXNA3	1
NM_021570	BARX1	1
NM_012256	ZNF212	1
NM_005229	ELK1	1
NM_032268	ZNRF1	1
NM_003643	GCM1	1
NM_000376	VDR	1
NM_001017535	VDR	1
NM_138348	FAM105B	1
NM_002509	NKX2-2	1
NM_002376	MARK3	1
NM_001032282	KLF10	1
NM_004816	C9orf61	1
NM_003342	UBE2G1	1
NM_020845	PITPNM2	1
NM_201525	GPR56	1
NM_201524	GPR56	1
NM_005682	GPR56	1
NM_021916	ZNF70	1
NM_001876	CPT1A	1
NM_015169	RRS1	1
NM_033505	SELI	1
NM_203373	FBXL22	1
NM_001736	C5AR1	1
XM_499022	LOC441124	1
NM_016562	TLR7	1
XM_929378	LOC646450	1
NM_020661	AICDA	1
NM_018416	FOXJ2	1
NM_017415	KLHL3	1
NM_001083926	ASRGL1	1
NM_025080	ASRGL1	1
NM_006315	PCGF3	1
XM_379840	LOC402509	1
XM_935781	LOC402509	1
NM_001040661	SLC29A4	1
NM_153247	SLC29A4	1
NM_052861	MGC21675	1
NM_016307	PRRX2	1
NM_025128	MUS81	1
NM_001097620		1
NM_033201	C16orf45	1
NM_001102594		1
NM_001102595		1
NM_001102596		1
NM_020892	DTX2	1
NM_003936	CDK5R2	1
NM_199054	MKNK2	1
NM_006342	TACC3	1
NM_145071	CISH	1
NM_016270	KLF2	1
NM_025250	TTYH3	1
NM_003021	SGTA	1
NM_020777	SORCS2	1
NM_144582	TEX261	1
NM_001031617	COX19	1
XM_378914	KIAA0492	1
XM_944290	KIAA0492	1
NM_198591	BSG	1
NM_198590	BSG	1
NM_198589	BSG	1
NM_001728	BSG	1
NM_152721	DOK6	1
NM_002657	PLAGL2	1
NM_001083909	GPR123	1
NM_153487	MDGA1	1
NM_004312	ARR3	1
NM_004693	KRT75	1
NM_001005609	EDA	1
NM_001399	EDA	1
NM_001093	ACACB	1
NM_024692	CLIP4	1
NM_198513	PHF20L1	1
NM_145687	MAP4K4	1
NM_145686	MAP4K4	1
NM_004834	MAP4K4	1
NM_030798	WBSCR16	1
NM_013989	DIO2	1
NM_001007023	DIO2	1
NM_000793	DIO2	1
NM_012218	ILF3	1
NM_031434	TMUB1	1
NM_152404	UGT3A1	1
NM_004232	SOCS6	1
NM_138991	BACE2	1
NM_138992	BACE2	1
NM_012105	BACE2	1
NM_024761	MOBKL2B	1
NM_001649	SHROOM2	1
NM_004747	DLG5	1
NM_002188	IL13	1
NM_013364	PNMA3	1
NM_014299	BRD4	1
NM_005631	SMO	1
NM_139071	SMARCD1	1
NM_003076	SMARCD1	1
NM_199247	CACNB1	1
NM_199248	CACNB1	1
NM_022566	MESDC1	1
NM_015831	ACHE	1
NM_001098	ACO2	1
NM_001039659	IL18BP	1
NM_001039660	IL18BP	1
NM_173042	IL18BP	1
XM_001129595	LOC729184	1
XM_001128760	LOC731186	1
NM_004930	CAPZB	1
NM_015245	ANKS1A	1
NM_000071	CBS	1
NM_000629	IFNAR1	1
NM_032575	GLIS2	1
NM_004096	EIF4EBP2	1
NM_181843	NUDT8	1
NM_002857	PEX19	1
NM_001077523	AP3D1	1
NM_003938	AP3D1	1
NM_003827	NAPA	1
NM_001101391		1
XM_001133420	LOC728991	1
NM_001201	BMP3	1
NM_004921	CLCA3	1
NM_152551	C6orf151	1
NM_030961	TRIM56	1
NM_000457	HNF4A	1
NM_178849	HNF4A	1
NM_153367	C10orf56	1
NM_139214	TGIF2LY	1
NM_001408	CELSR2	1
NM_003684	MKNK1	1
NM_000926	PGR	1
NM_004643	PABPN1	1
NM_005686	SOX13	1
NM_004759	MAPKAPK2	1
NM_000744	CHRNA4	1
NM_024627	C22orf29	1
NM_174911	FAM84B	1
NM_001111125		1
XM_940524	FLJ32154	1
XM_928933	FLJ32154	1
NM_023934	FUNDC2	1
NM_015253	WSCD1	1
NM_206538	LOC284361	1
NM_175063	LOC284361	1
NM_001089595		1
NM_003045	SLC7A1	1
NM_007011	ABHD2	1
NM_152924	ABHD2	1
NM_021961	TEAD1	1
NM_016396	CTDSPL2	1
NM_019610	RBMXL1	1
NM_153717	EVC	1
NM_022755	IPPK	1
NM_183337	RGS11	1
NM_003834	RGS11	1
NM_183050	BCKDHB	1
NM_032364	DNAJC14	1
NM_002745	MAPK1	1
NM_057161	KLHDC3	1
NM_153451	ORAOV1	1
NM_002827	PTPN1	1
NM_002360	MAFK	1
NM_020530	OSM	1
NM_003107	SOX4	1
NM_152341	PAQR4	1
NM_002629	PGAM1	1
XM_926954	LOC642969	1
XM_931734	LOC642969	1
NM_004884	PUNC	1
NM_021270	LAIR2	1
NM_002288	LAIR2	1
NM_144775	SMCR8	1
NM_014938	MLXIP	1
NM_016544	RBJ	1
NM_014732	KIAA0513	1
NM_004514	FOXK2	1
XM_001134363	FOXK2	1
XM_001134364	FOXK2	1
NM_015385	SORBS1	1
NM_001034954	SORBS1	1
NM_001034957	SORBS1	1
NM_001034955	SORBS1	1
NM_001034956	SORBS1	1
NM_006434	SORBS1	1
NM_024991	SORBS1	1
XM_001131348	LOC731942	1
XM_001131154	LOC729734	1
NM_001079877	RASA4	1
NM_006989	RASA4	1
NM_015092	SMG1	1
NM_022098	XPNPEP3	1
NM_052931	SLAMF6	1
NM_019119	PCDHB9	1
NM_005895	GOLGA3	1
NM_018294	CWF19L1	1
NM_016463	CXXC5	1
NM_006991	ZNF197	1
XM_001129552	LOC729173	1
NM_152470	RNF165	1
NM_022093	TNN	1
NM_007189	ABCF2	1
NM_017680	ASPN	1
NM_020844	KIAA1456	1
NM_001099677		1
NM_001013663	LOC391356	1
NM_052899	GPRIN1	1
NM_004491	GRLF1	1
NM_015050	KIAA0082	1
NM_001037806	LOC283331	1
NM_012306	FAIM2	1
NM_024607	PPP1R3B	1
NM_203293	TRIM7	1
NM_203297	TRIM7	1
NM_203294	TRIM7	1
NM_203296	TRIM7	1
NM_203295	TRIM7	1
NM_001010867	C1orf69	1
NM_006347	PPIH	1
XM_931612	LOC643529	1
XM_943256	LOC643529	1
NM_024819	DCAKD	1
NM_015299	KIAA0323	1
NM_001014838	CUTA	1
NM_001014433	CUTA	1
NM_001014840	CUTA	1
NM_015921	CUTA	1
NM_001014837	CUTA	1
NM_032360	ACBD6	1
NM_003255	TIMP2	1
XM_001132362	TIMP2	1
NM_022090	LOC63920	1
NM_001014380	KATNAL1	1
NM_032116	KATNAL1	1
NM_138358	C19orf52	1
NM_213606	SLC16A12	1
NM_032777	GPR124	1
NM_003417	ZNF264	1
NM_012398	PIP5K1C	1
NM_033135	PDGFD	1
NM_025208	PDGFD	1
NM_020433	JPH2	1

---

Immunostimulatory motif search results

UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).

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Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

Parameter	Spec. Score cut-off	Colour	Comment
Hit to same gene		Colour	Hits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit	≥80	Colour	Hits are very likely to cause an off-target effect
Medium scoring hit	<80¸≥40	Colour	Hits with a small chance of causing an off target effect.
Low scoring hit		Colour	Hits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-off	Colour
Match	Colour
Wobble base pairs (G-U)	Colour
Critical bases (none)	Colour
0.6 bits	Colour
0.4 bits	Colour
0.2 bits	Colour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer

For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317