Predicted Off-targets for siRNA "cuaggaggcuguaggcaua" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

17 hits were found for CUAGGAGGCUGUAGGCAUA (7 guide strand hits and 10 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_016577 RAB6B 2692 2710 CUAGGAGGCUGUAuGCcag49 4 13 c false   <90%   5561
NM_006371 CRTAP 3410 3428 aaAaGAGGCUGUAGGCAUc44 4 14 bc false   <90%   6622
NM_006617 NES 5180 5198 aauGGAGGCUGUAGGaAUA40 4 12 c false   <90%   5591
NM_014425 INVS 2788 2806 CUAGGAGGCUGgAGaCAUc36 3 11   false   <90%   3880
NM_015227 POFUT2 1389 1407 aUAGcAGGCUGUuGGCAUA36 3 7   false   <90%   4843
NM_019089 HES2 2253 2271 gaAGGAaGCUGUAGGCAUu15 4 11 bc false   <90%   4259
NM_020428 SLC44A2 219 237 CUAcGuGGCUGUAGGCAUc-5 3 12 bc false   <90%   3389


Hits to Sense strand











AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_002616 PER1 501 519 auUGCCUACAGCCUCCUga78 4 15 ac false   <90%   4656
NM_017736 THUMPD1 316 334 gAgGCCUACAGCCUCCUca70 4 14 c false   <90%   4416
NR_003505 PPP4R1L 1676 1694 UgUGCCUACAGCCUCCcAG65 2 14 ac false   <90%   2398
NM_001042600 MAP4K1 1179 1197 cucGCCUACAGCCUCCUcG64 4 14 c false   <90%   2688
NM_007181 MAP4K1 1179 1197 cucGCCUACAGCCUCCUcG64 4 14 c false   <90%   2786
NM_207320 OTUD6A 812 830 UAUGCCUACAGCCUCggcG47 3 15 c false   <90%   1689
XR_016984 LOC340888 676 694 augGCCUACAGCCcCCUAG47 4 10 c false   <90%   1080
XR_018726 LOC340888 676 694 augGCCUACAGCCcCCUAG47 4 10 c false   <90%   1080
NM_001017967 MARVELD3 977 995 gccGCCUuCAGCCUCCUAG4 4 11 bc false   <90%   2239
NM_004943 DMWD 2102 2120 cAUGCCccCAGCCUCCUAG-30 3 11 bc false   <90%   3308


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1582
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_014586HUNK4
NM_003281TNNI13
NM_014655SLC25A443
NM_022473ZFP1063
NM_173598KSR23
XM_001130020KIAA11473
XM_001130081KIAA11473
NM_001080392KIAA11473
NM_005840SPRY33
NM_018373SYNJ2BP3
NM_004807HS6ST13
XM_001132928LOC7289693
NM_015076CDC2L62
NM_015341NCAPH2
NM_015039NMNAT22
NM_170706NMNAT22
NM_152367C1orf1612
NM_005471GNPDA12
NM_032900ARHGAP192
NM_002445MSR12
NM_013302EEF2K2
NM_016621PHF21A2
NM_0011018022
NM_199454PRDM162
NM_022114PRDM162
NM_006999POLS2
NM_016258YTHDF22
NM_001042599ERBB42
NM_005235ERBB42
NM_018899PCDHAC22
NM_018900PCDHA12
NM_018902PCDHA112
NM_031849PCDHA62
NM_018905PCDHA22
NM_018904PCDHA132
NM_031860PCDHA102
NM_018907PCDHA42
NM_018909PCDHA62
NM_018910PCDHA72
NM_018911PCDHA82
NM_018906PCDHA32
NM_018903PCDHA122
NM_018898PCDHAC12
NM_031857PCDHA92
NM_031411PCDHA12
NM_018908PCDHA52
NM_018901PCDHA102
NM_001017440CALN12
NM_031468CALN12
NM_198571FLJ392372
NM_017637BNC22
NM_004711SYNGR12
NM_152375KLHDC7A2
NM_006306SMC1A2
NM_005546ITK2
NM_023112OTUB22
NM_152263TPM32
NM_015604WDR21A2
NM_181340WDR21A2
NM_181341WDR21A2
NM_005957MTHFR2
NM_020772NUFIP22
NM_080836STK352
NM_153033KCTD72
NM_030792GDPD52
NM_017592IXL2
NM_015516TSKU2
NM_017952PTCD32
NM_001040445ASB12
NM_001776ENTPD12
NM_0010981752
NM_152222TNFRSF19L2
NM_032871TNFRSF19L2
NM_001039479KIAA03172
NM_178860SEZ62
NM_0010986352
NM_080670SLC35A42
NM_001859SLC31A12
NM_014911AAK12
NM_007050PTPRT2
NM_133170PTPRT2
NM_001942DSG12
NM_015168C19orf72
NM_144721THAP62
NM_001079843CASZ12
NM_175064WBSCR192
XM_499356LOC4426092
XM_935540LOC4426092
NM_001031618MGC1192952
NM_0010994352
NM_138415PHF21B2
NM_0011003902
NM_152558IQCE2
NM_030943AMN2
NM_001010891MTX32
NM_001038707CDC42SE12
NM_020239CDC42SE12
XM_001126328LOC3881522
NM_033549TRIM412
NM_007350PHLDA12
NM_014952BAHD12
NM_207113SLC37A32
NM_0010988332
NM_0202182
NM_198715PTGER32
NM_001006616TSPAN172
NM_012171TSPAN172
NM_130465TSPAN172
NM_005909MAP1B2
NM_017847C1orf272
NM_013402FADS12
NM_006912RIT12
NM_014309RBM92
NM_001082576RBM92
NM_001082577RBM92
NM_001031695RBM92
NM_001082578RBM92
NM_001082579RBM92
NM_001042383CEP632
NM_001042400CEP632
NM_025180CEP632
NM_004976KCNC12
XM_942780SYNPO22
NM_000254MTR2
NM_006802SF3A32
NM_001013690LOC4017202
NM_182832PLAC42
NM_000437PAFAH22
NM_173582PGM2L12
NM_006315PCGF32
NM_004112FGF112
NM_004210NEURL2
NM_003145SSR22
XM_001128341SSR22
NM_016431MAPK8IP22
NM_012324MAPK8IP22
NM_006380APPBP22
NM_003274TMEM12
NM_007085FSTL12
NM_020161DKFZp547H0252
NM_181809BMP8A2
NM_005047PSMD52
NM_032449CC2D1B2
NM_032932RAB11FIP42
NM_017644KLHL241
NM_004491GRLF11
NM_022763FNDC3B1
NM_002040GABPA1
NM_003112SP41
NM_018302C4orf191
NM_0011046291
NM_005927MFAP31
XM_001128973LOC7284491
NM_014828TOX41
NM_001010984C1orf1241
NM_001400EDG11
XM_498841LOC4407481
XM_001126700LOC7281471
XM_001126645LOC7306381
NM_002203ITGA21
NM_173672PPIL61
NM_0011112981
NM_006085BPNT11
NM_018962DSCR61
NM_005647TBL1X1
NM_012233RAB3GAP11
NM_004438EPHA41
XM_001130526LOC7286361
XM_001130555LOC7286361
XM_001129399LOC6423461
XM_001130543LOC7286361
XM_928707LOC6423461
XM_925879LOC6423461
XM_001130536LOC7286361
XM_925864LOC6423251
NM_173650DNAJC5G1
NM_012129CLDN121
NM_138292ATM1
NM_000051ATM1
NM_005864EFS1
NM_032459EFS1
NM_0010996921
XM_926071LOC6425921
NM_020933ZNF3171
NM_024563C5orf231
NM_184234RBM391
NM_004902RBM391
NM_016448DTL1
NM_012072CD931
XM_001130258FAM69B1
NM_001037164ARL4A1
NM_005738ARL4A1
NM_212460ARL4A1
NM_001711BGN1
NM_002997SDC11
NM_001006946SDC11
NM_005678SNURF1
NM_0208231
NM_005822DSCR1L11
XM_001129120LOC7290341
XM_001133170LOC7288241
NM_032832LRP111
NM_052938FCRL11
NM_007195POLI1
NM_144686TMC41
NM_001033604BBS91
NM_014451BBS91
NM_198428BBS91
NM_001033605BBS91
NM_004162RAB5A1
NM_013995LAMP21
NM_030927TSPAN141
NM_020228PRDM101
NM_199438PRDM101
NM_199437PRDM101
NM_199439PRDM101
NM_019063EML41
NM_025201PLEKHQ11
NM_139125MASP11
NM_001033047NPNT1
NM_0010997331
NM_001117ADCYAP11
NM_016206VGLL31
XM_928029RNF1871
XM_001129309RNF1871
NM_002062GLP1R1
NM_030660ATXN31
NM_004993ATXN31
NM_002855PVRL11
NM_198334GANAB1
NM_198335GANAB1
NM_002923RGS21
NM_0149871
NM_021079NMT11
NM_0011016761
NM_006612KIF1C1
NM_207362MGC423671
NM_006099PIAS31
NM_006492ALX31
NM_012231PRDM21
NM_024989PGAP11
NM_004738VAPB1
NM_000723CACNB11
NM_015257KIAA02861
NM_004757SCYE11
NM_001001874TPD52L31
NM_152615PARP151
NM_173495PTCHD11
NM_139119YY1AP11
NM_139118YY1AP11
NM_020731AHRR1
NM_017798YTHDF11
NM_006165NFRKB1
NM_007176C14orf11
NM_005802TOPORS1
NM_016390C9orf1141
NM_016026RDH111
NM_001017523BTBD111
NM_001018072BTBD111
NM_138426GLCCI11
NM_002677PMP21
NM_020148SPIRE11
NM_173482CCDC1051
NM_015391ANAPC131
NM_006939SOS21
NM_002725PRELP1
NM_201348PRELP1
NM_002737PRKCA1
NM_144590ANKRD221
NM_001631ALPI1
NM_138620DDX311
NM_145274TMEM991
NM_003480MFAP51
NM_145284FAM122B1
NM_001040102TMEM101
NM_033207TMEM101
NM_001040103TMEM101
XM_001129841LOC4409001
XM_498909LOC4409001
NM_153703PODN1
NM_145277HFE21
NM_202004HFE21
NM_213652HFE21
NM_213653HFE21
NM_080872UNC5D1
NM_003486SLC7A51
NM_005188CBL1
NM_020939CPNE51
NM_153035C1orf831
NM_000130F51
NM_052840BRUNOL61
NM_012437SNAPAP1
NM_001009909LUZP21
NM_015511C20orf41
NM_004196CDKL11
NM_172239REXO1L11
NM_0011050691
NM_182617ACSM21
NM_000417IL2RA1
NM_007043KRR11
NM_138972BACE11
NM_012104BACE11
NM_138973BACE11
NM_138971BACE11
NM_024771NAT111
NM_025214CCDC681
NM_152307C14orf1721
NM_020826SYT131
NM_0207211
NM_017712PGPEP11
XM_001131007LOC7296781
XM_001127177LOC7307801
NM_015514NGDN1
NM_020717SHROOM41
NM_0011110401
NM_152371C1orf931
NM_014550CARD101
NM_144628TBC1D201
NM_015141GPD1L1
NM_198935SS18L11
NM_001014797KCNMA11
NM_006753SURF61
NM_022148CRLF21
NM_001024372BAALC1
NM_024812BAALC1
NM_173825RABL31
XM_926634LOC6532561
XM_373030LOC2855561
XM_939505LOC2855561
NM_207577MAP61
NM_174929ZMIZ21
NM_031449ZMIZ21
NM_004959NR5A11
XM_945008LOC6519081
XM_932981LOC6455811
NM_207379TMEM1791
NM_199413PRC11
NM_199414PRC11
NM_003981PRC11
XM_379517LOC4013991
XM_938040LOC4013991
XM_380142LOC4013991
NM_133468BMPER1
NM_006300ZNF2301
NM_152304RAB421
NM_024807TREML21
XM_375443LOC2841001
NM_001017998GNG101
NM_022475HHIP1
NM_004080DGKB1
NM_006933SLC5A31
NM_016231NLK1
NM_031902MRPS51
NM_014733ZFYVE161
NM_0011052511
NM_004926ZFP36L11
NM_000391TPP11
NM_0011097541
NM_002837PTPRB1
NM_0011132391
NM_022740HIPK21
NM_003449TRIM261
NM_017563IL17RD1
NM_001080973IL17RD1
NM_017780CHD71
NM_130830LRRC151
NM_021962ABR1
NM_001092ABR1
NM_003705SLC25A121
NM_005105RBM8A1
NM_019885CYP26B11
NM_014746RNF1441
NM_005529HSPG21
NM_020133AGPAT41
NM_015343DULLARD1
NM_001095ACCN21
NM_020039ACCN21
NM_015075IQSEC21
NM_0011111251
NM_145260OSR11
NM_001543NDST11
NM_198086JUB1
NM_032876JUB1
NM_138434C7orf291
NM_001031711ERGIC11
NM_005104BRD21
NM_0011131821
NM_014411NAG81
NM_001079803GAA1
NM_001079804GAA1
NM_000152GAA1
NM_001042498SLC35A21
NM_001032289SLC35A21
NM_033364C3orf151
NM_138368DKFZp761E1981
NM_203374ZNF7841
NM_001024649CANX1
NM_001746CANX1
NM_002375MAP41
NM_030884MAP41
NM_001003722GLE1L1
XM_001134215PDPR1
NM_017990PDPR1
NM_020458TTC7A1
NM_018941CLN81
NM_006892DNMT3B1
NM_175848DNMT3B1
NM_175849DNMT3B1
NM_175850DNMT3B1
XM_001129423LOC7291371
XM_001126090LOC7281461
XM_001129476LOC2864341
NM_020465NDRG41
NM_022910NDRG41
NM_177964LOC1305761
NM_017849TMEM1271
NM_152393KBTBD51
NM_177457LYNX11
NM_177477LYNX11
NM_177476LYNX11
NM_024674LIN281
NM_001025077CUGBP21
NM_152470RNF1651
NM_022047DEF61
NM_005440RND21
NM_000351STS1
NM_006993NPM31
NM_018156VPS13D1
NM_015378VPS13D1
NM_001188BAK11
NM_000744CHRNA41
NM_018265C1orf1061
NM_000405GM2A1
XM_930678LOC6424411
XM_001134398LOC7302561
XM_001134399LOC7302571
NM_173826C3orf231
NM_014335EID11
NM_152388ALS2CR41
NM_001044385ALS2CR41
NM_018688BIN31
NM_014730KIAA01521
NM_015330SPECC1L1
NM_014932NLGN11
NM_173529C18orf541
NM_032592PHACS1
NM_014838ZBED41
NM_000308CTSA1
NM_001518GTF2I1
NM_032999GTF2I1
NM_033000GTF2I1
NM_033001GTF2I1
XM_001133646LOC7324371
NM_152734C6orf891
NM_024811FLJ125291
NM_003749IRS21
NM_006626ZBTB61
NM_006830UQCR1
NM_080927DCBLD21
NM_016396CTDSPL21
NM_006011ST8SIA21
NM_002906RDX1
NM_003043SLC6A61
NM_012416RANBP61
NM_207359GADL11
NM_001003712OSBPL81
NM_020841OSBPL81
NM_014046MRPS18B1
NM_182848CLDN101
NM_006984CLDN101
NM_005069SIM21
NM_001077263TMPRSS131
NM_004628XPC1
XM_378973LOC2848011
XM_944897LOC2848011
NM_001002914KCTD111
NM_176824BBS71
NM_175052ST8SIA41
NM_052954CYYR11
NM_002569FURIN1
NM_0152071
NM_001039585PTGFR1
NM_000959PTGFR1
NM_014600EHD31
NM_001004302ZNF7831
XM_001128986LOC7289801
NM_173638NBPF151
NM_0011026631
NM_183372NBPF111
NM_032264NBPF31
NM_020453ATP10D1
NM_000775CYP2J21
NM_005329HAS31
NM_018845RAG1AP11
NM_181521CMTM41
NM_014141CNTNAP21
NM_016123IRAK41
NM_032492JAGN11
NM_006813PNRC11
NM_201628FLJ438061
NM_001001701LOC4011521
NM_001233CAV21
NM_198212CAV21
NM_138801GALM1
NM_004863SPTLC21
NM_001005502CPM1
NM_198320CPM1
NM_001874CPM1
NM_133493CD1091
NM_000677ADORA31
XM_937998LOC1238551
XM_063871LOC1238551
NM_001259CDK61
NM_001939DRP21
NM_004364CEBPA1
NM_001712CEACAM11
NM_001024912CEACAM11
NM_0209111
NM_178550C1orf1101
NM_012425RSU11
NM_152724RSU11
NM_181783TMTC31
NM_002815PSMD111
NM_133265AMOT1
NM_004852ONECUT21
NM_145165CHURC11
NM_148977PANK11
NM_138316PANK11
NM_148978PANK11
NM_004893H2AFY1
NM_138610H2AFY1
NM_138609H2AFY1
NM_001040158H2AFY1
NM_006627POP41
NM_004650PNPLA41
XM_001128716STX51
NM_003164STX51
NM_001695ATP6V1C11
NM_001001396ATP2B41
NM_001684ATP2B41
NM_006534NCOA31
NM_181659NCOA31
NM_022068FAM38B1
NM_031845MAP21
NM_031847MAP21
NM_001039538MAP21
NM_002374MAP21
NM_014824FCHSD21
NM_000545TCF11
NM_178585WDFY31
NM_014991WDFY31
XM_001125745ZNF4691
XM_939259ZNF4691
NM_153347TMEM86A1
NM_001080745DGKG1
NM_001346DGKG1
NM_001080744DGKG1
NM_018403DCP1A1
NM_001039591USP9X1
NM_001039590USP9X1
NM_012328DNAJB91
NM_177452TRAPPC6B1
NM_001079537TRAPPC6B1
NM_133334WHSC11
NM_001010888ZC3H12B1
NM_032578MYPN1
NM_020440PTGFRN1
NM_015374UNC84B1
NM_000780CYP7A11
NM_014615KIAA01821
NM_001106ACVR2B1
NM_145044ZNF5011
NM_022073EGLN31
NM_032946NXF51
NM_012461TINF21
NM_004604STX41
NM_002959SORT11
NM_004560ROR21
NM_000337SGCD1
NM_012395PFTK11
XM_001125730LOC7278321
NM_052916RNF1571
NM_005607PTK21
NM_153831PTK21
NM_207521RTN41
NM_153828RTN41
NM_020532RTN41
NM_007008RTN41
NM_207520RTN41
NM_002507NGFR1
NM_0010996521
NM_194318B3GALTL1
XM_001126762LOC7281761
NM_001987ETV61
NM_005197CHES11
NM_0010854711
NM_052936ATG4A1
NM_178270ATG4A1
NM_014850SRGAP31
NM_001033117SRGAP31
NM_024046CAMKV1
NM_199487C20orf441
NM_018244C20orf441
NM_001029955WDR21B1
NM_152418WDR21C1
NM_006750SNTB21
NM_0011001221
NM_014963SBNO21
NM_001040715LOC6533191
NM_178831GATS1
NM_015042ZNF6091
XM_001126326AGRIN1
NM_198576AGRN1
NM_015352POFUT11
NM_024522FAM77C1
NM_005941MMP161
NM_001025603RFX51
NM_000449RFX51
NM_006336ZER11
NM_020119ZC3HAV11
NM_005829AP3S21
XM_001131014LOC7296831
XM_001130799LOC7317831
NM_152348WDR811
NM_005336HDLBP1
NM_203346HDLBP1
NM_017628KIAA15461
NM_016513ICK1
NM_014920ICK1
XM_374787C10orf211
NM_148960CLDN191
NM_173827COX181
NM_144579SFXN51
NM_171982TRIM351
NM_001037814GAB41
NM_000461THRB1
NM_014862ARNT21
XM_001128878LOC7310521
XM_001128934LOC7287241
NM_020447C15orf171
NM_176823S100A7A1
NM_002251KCNS11
NM_018669WDR41
NM_194439RNF2121
NM_005902SMAD31
NM_012232PTRF1
NM_183376ARRDC41
NM_014937INPP5F1
NM_205852CLEC12B1
NM_152756RICTOR1
NM_020335VANGL21
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
XM_001126375LOC7279221
XM_001126361LOC7279221
XM_001126406LOC7279221
XM_001126391LOC7279221
XM_001126417LOC7279221
NM_033429CALML41
NM_001031733CALML41
NM_007078LDB31
NM_001080114LDB31
NM_001010980C1orf1301
NM_138700TRIM401
NM_024913FLJ219861
NM_012305AP2A21
NM_004370COL12A11
NM_080645COL12A11
NM_005253FOSL21
NM_173535CLEC4F1
NM_016400HYPK1
NM_020435GJA121
NM_022460HS1BP31
NM_014871USP521
NM_017797BTBD21
NM_033229TRIM151
NM_001077621VPS37D1
NM_007225NXPH31
NM_018419SOX181
NM_176072P2RY21
NM_002564P2RY21
NM_176071P2RY21
NM_020765ZUBR11
NM_145893A2BP11
NM_001531MR11
NM_025125C10orf571
NM_000945PPP3R11
NM_015471NSL11
NM_001042549NSL11
NM_013389NPC1L11
NM_0011016481
NM_207397CD164L21
NM_003861WDR221
NM_020382SETD81
NM_018161NADSYN11
XM_001125719LOC7277511
XM_001125942LOC7278491
NM_018191RCBTB11
NM_006238PPARD1
XM_935946LOC6419121
XM_931994LOC6440901
XM_945887LOC6440901
NM_173543DZIP1L1
NM_014786ARHGEF171
NM_004078CSRP11
XM_940825DLGAP31
NM_001080418DLGAP31
XM_042978FRMPD31
XM_937007FRMPD31
NM_015557CHD51
NM_001047SRD5A11
NM_006504PTPRE1
NM_130435PTPRE1
NM_019112ABCA71
NM_006517SLC16A21
NM_0011013461
NM_032294CAMKK11
NM_172206CAMKK11
NM_002247KCNMA11
NM_152450FAM81A1
NM_032208ANTXR11
NM_002252KCNS31
NM_002034FUT51
NM_001040701FUT61
NM_000150FUT61
NM_0010853751
NM_003559PIP5K2B1
NM_194286KIAA18531
NM_005156ROD11
NM_201627TRIM411
NM_005149TBX191
NM_017736THUMPD11
NM_013385PSCD41
NM_015683ARRDC21
NM_001025604ARRDC21
NM_018389SLC35C11
NM_015417C20orf281
NM_001042535CENTG31
XM_001132325LOC7300811
XM_001127777LOC7309341
NM_203425C17orf821
NM_022829SLC13A31
NM_001011554SLC13A31
NM_021248CDH221
NM_001801CDO11
NM_153020RBM241
NM_213600PLA2G4F1
XM_001132034LOC7321591
NM_007283MGLL1
NM_001003794MGLL1
NM_001395DUSP91
NM_016037UTP11L1
NM_006265RAD211
NM_015448RP11-529I10.41
NM_172236POFUT11
NM_032211LOXL41
NM_173683XKR61
XM_001133189INPP5A1
NM_005539INPP5A1
NM_152424FAM123B1
NM_138381OXNAD11
NM_0011003981
NM_015085GARNL41
NM_001081755ELN1
NM_001081754ELN1
NM_001081752ELN1
NM_000501ELN1
NM_001081753ELN1
NM_005242F2RL11
XM_940966LOC6472191
NM_001879MASP11
NM_021133RNASEL1
NM_007325GRIA31
NM_000828GRIA31
NM_1383821
NM_004728DDX211
NM_003822NR5A21
NM_205860NR5A21
NM_144675GSG1L1
NM_0011097631
NM_022659EBF21
NM_153451ORAOV11
NM_013999MEOX11
NM_004527MEOX11
NM_001040002MEOX11
NM_005465AKT31
NM_145807LOC1261471
NM_030949PPP1R14C1
NM_015052HECW11
NM_015447CAMSAP11
NM_203451LOC4001201
NM_024836ZNF6721
NM_024306FA2H1
NM_003658BARX21
XM_001127950LOC7305661
XM_001133333LOC7291721
NM_006076HRBL1
NM_1735691
NM_001018053PFKFB21
NM_198508KLRG21
NM_002111HD1
NM_000376VDR1
NM_001017535VDR1
NM_001002860BTBD71
NM_145689APBB11
NM_001164APBB11
NM_017790RGS31
NM_004955SLC29A11
NM_001078176SLC29A11
NM_001078175SLC29A11
NM_001078177SLC29A11
NM_001078174SLC29A11
NM_014275MGAT4B1
NM_054013MGAT4B1
NM_006037HDAC41
NM_004656BAP11
NM_030777SLC2A101
NM_021813BACH21
XM_943429LOC6464841
XM_933646LOC6464841
NM_020825CRAMP1L1
NM_020482FHL51
NM_032357CCDC1151
NM_002657PLAGL21
NM_014352POU2F31
NM_007331WHSC11
NM_032873STS-11
NM_1827627A51
NM_152988SPPL2B1
NM_001077238SPPL2B1
NM_032021TMEM1331
NM_020207C9orf1021
XM_001133585LOC7293171
XM_941786LOC6471531
NM_032899FAM83A1
NM_181337KAAG11
XM_939100MYO5B1
NM_001080467MYO5B1
NM_001002034FAM109B1
NM_001039397FLJ402441
NM_0010895841
XM_938404LOC6493301
XM_943975FLJ390801
XM_499117FLJ390801
NM_004171SLC1A21
NM_005109OXSR11
NM_022716PRRX11
NM_006902PRRX11
NM_004035ACOX11
NM_007292ACOX11
NM_000429MAT1A1
NM_033141MAP3K91
NM_201634TCF71
NM_0011004231
NM_0011004221
NM_0011004241
NM_015535LOC260101
NM_006522WNT61
NM_003904ZNF2591
NM_005590MRE11A1
NM_005591MRE11A1
NM_012181FKBP81
NM_152496MANEAL1
NM_001031740MANEAL1
NM_001002762DNAJB121
XM_001128799MAP3K21
NM_002074GNB11
NM_052880PIK3IP11
NM_018945PDE7B1
NM_020947KIAA16091
NM_0011113081
NM_0011113091
NM_0011113071
NM_006202PDE4A1
NM_021012KCNJ121
NM_031418TMEM16C1
XM_378312LOC2831431
XM_943773LOC2831431
NM_021575AP2S11
NM_004069AP2S11
NM_138771CCDC1261
NM_022377ICAM41
NM_017647FTSJ31
NM_0011026031
NM_198893ZNF1601
NM_033288ZNF1601
NM_014043CHMP2B1
NM_017622C17orf591
NM_002357MXD11
NM_012141INTS61
NM_001039937INTS61
NM_016436PHF201
NM_052995CLRN11
NM_152529GPR1551
NM_001033045GPR1551
NM_203413C17orf811
NM_152860SP71
NM_144997FLCN1
NM_0010992941
XM_936510KIAA16441
NM_002105H2AFX1
NM_014935PLEKHA61
NM_000209PDX11
NM_018963BRWD11
NM_176871PDLIM21
NM_018951HOXA101
NM_153715HOXA101
NM_001004297OR13A11
NM_024699ZFAND11
NM_001040633PRKAG21
NM_016203PRKAG21
NM_024429PRKAG21
NM_032295SLC37A31
XM_001129292MBOAT21
NM_033387FAM78A1
NM_022758C6orf1061
NM_024294C6orf1061
NM_000387SLC25A201
XM_001133926SLC25A201
NM_022463NXN1
NM_145064STAC31
NM_199355ADAMTS181
NM_0010854601
NM_0010854691
NM_0010854651
NM_0010854661
NM_0010854621
NM_0010854611
NM_0010854581
NM_0010854681
NM_0010854631
NM_0010854671
NM_001331CTNND11
NM_0010854591
NM_0010854641
NM_022166XYLT11
XM_001125986LOC2838241
NM_003048SLC9A21
NM_014772KIAA04271
NM_001013632LOC3435211
NM_017789SEMA4C1
NM_003322TULP11
NM_003034ST8SIA11
NM_013375ABT11
NM_001039840CHIC11
NM_012069ATP1B41
NM_014460CSDC21
NM_133491SAT21
NM_016239MYO15A1
NM_001933DLST1
NM_152512ENTHD11
NM_0011031671
NM_152265BTF3L41
NM_018133MSL2L11
NM_001047605KIR3DX11
NM_003777DNAH111
NM_002640SERPINB81
NM_198833SERPINB81
NM_014341MTCH11
NM_032271TRAF71
NM_015055SWAP701
NM_032221CHD61
NM_016474C3orf191
NM_015171XPO61
NM_021116ADCY11
NM_133374ZNF6181
NM_022112P53AIP11
NM_033049MUC131
XM_946265FHAD11
XM_934889FHAD11
NM_012316KPNA61
XM_940199KIAA12761
XM_039169KIAA12761
NM_133371MYOZ31
NM_176811NLRP81
NM_173687C8orf311
NM_198542ZNF7731
NM_014368LHX61
NM_199160LHX61
NM_057089AP1S11
NM_001283AP1S11
NM_018667SMPD31
XM_943278LOC6447271
XM_932334LOC6447271
NM_0011113221
NM_024072DDX541
NM_001007024GOSR11
NM_001007025GOSR11
NM_004871GOSR11
NM_022138SMOC21
NM_002223ITPR21
NM_001077352RBM231
NM_018107RBM231
NM_001077351RBM231
NM_001029870ANKRD561
NM_001080975REPS21
NM_004726REPS21
NM_0010129941
NM_018053XKR81
XM_001132703FLJ410471
XM_001133280FLJ410471
NM_145912NFAM11
NM_015490SEC31B1
NM_016272TOB21
XM_933796SLC45A41
XM_944850SLC45A41
NM_001080431SLC45A41
XM_001131823ANKRD30A1
NM_052997ANKRD30A1
NM_014346TBC1D22A1
NM_002960S100A31
NM_001001479SLC35E41
NM_000904NQO21
NM_000526KRT141
NM_030758OSBP21
NM_024676C1orf1131
NM_012087GTF3C51
NM_017766CASZ11
NM_024012HTR5A1
NM_004055CAPN51
NM_018085IPO91
NM_001037954DIXDC11
NM_033425DIXDC11
NM_004973JARID21
NM_178013PRIMA11
XM_001132246LOC7299971
NM_000877IL1R11
NM_198510ITIH5L1
NM_017970C14orf1021
NM_199043C14orf1021
NM_000367TPMT1
NM_021706LAIR11
NM_002287LAIR11
NM_005596NFIB1
NM_003458BSN1
NM_014580SLC2A81
NM_033446FAM125B1
NM_138393REEP61
NM_021948BCAN1
NM_021102SPINT21
NM_002406MGAT11
NM_001110ADAM101
NM_052906LRRC621
NM_014353RAB261
NM_152268PARS21
NM_005225E2F11
NM_018225SMU11
NM_017773LAX11
NM_004808NMT21
NM_006134TMEM50B1
NM_020802KIAA13771
NM_001244TNFSF81
XM_001134449KBTBD91
XM_940375KBTBD91
NM_022003FXYD61
NM_173483FLJ395011
NM_021808GALNT91
NM_153615Rgr1
NM_003881WISP21
NM_152376UBXD31
NM_001081461JMJD61
NM_016577RAB6B1
NM_207514FLJ201861
NM_000368TSC11
XM_001129415FLJ226751
XM_001129697FLJ226751
NM_006545TUSC41
NM_003216TEF1
NM_016348C5orf41
NM_032385C5orf41
NM_002587PCDH11
NM_015206KIAA10241
NM_001033549HSPC1421
NM_014173HSPC1421
NM_001004434SLC30A21
NM_032513SLC30A21
NM_024594PANK31
NM_006038SPATA21
NM_178842LASS31
XM_001132315LOC7322261
NM_133639RHOV1
NM_032289PSD21
NM_001950E2F41
NM_016952CDON1
XM_001133286CDON1
XM_001133299CDON1
NM_007220CA5B1
NM_134431SLCO1A21
NM_021094SLCO1A21
NM_019107C19orf101
NM_0207251
NM_003498SNN1
NM_078467CDKN1A1
NM_000389CDKN1A1
NM_002755MAP2K11
NM_001006620MAPKAP11
NM_001006619MAPKAP11
NM_001006621MAPKAP11
NM_024117MAPKAP11
NM_001006617MAPKAP11
NM_001031749LYPD51
NM_005500SAE11
NM_025207FLAD11
NM_201398FLAD11
NM_003863DPM21
NM_030626LRRC271
NM_203305FAM102A1
NM_001035254FAM102A1
NM_018704CTTNBP2NL1
NM_1736011
NM_0010996501
NM_012256ZNF2121
NM_032718MFSD91
NM_004729ZBED11
NM_174934SCN4B1
NM_020778ALPK31
NM_003482MLL21
NM_194071CREB3L21
NM_152942TNFRSF81
NM_001243TNFRSF81
NM_138814PNPLA51
NM_001076682NCAM11
NM_139056ADAMTS161
NM_014282HABP41
NM_001080485ZNF2751
NM_052875VPS26B1
NM_0011045461
NM_006521TFE31
NM_004048B2M1
NM_016639TNFRSF12A1
NM_006736DNAJB21
NM_003468FZD51
NM_005895GOLGA31
NM_015027PDXDC11
XM_001125924KIAA02511
NM_005151USP141
NM_001037334USP141
NM_144571CNOT6L1
NM_005487HMG2L11
NM_014250HMG2L11
NM_001003681HMG2L11
NM_013401RAB3IL11
NM_0011055761
XM_001133335ULK11
NM_172169CAMK2G1
NM_001222CAMK2G1
NM_172173CAMK2G1
NM_172171CAMK2G1
NM_172170CAMK2G1
NM_173547TRIM651
NM_004992MECP21
NM_001004106GRK61
NM_002082GRK61
NM_006484DYRK1B1
NM_004714DYRK1B1
NM_006483DYRK1B1
NM_020730DLG31
NM_021120DLG31
NM_145037FAM55C1
NM_000259MYO5A1
NM_005897IPP1
NM_138738FCRL21
NM_030764FCRL21
NM_001012981ZKSCAN21
NM_032503MCHR21
NM_001040179MCHR21
NM_172207CAMKK11
XM_001127362KIAA05741
NM_001093ACACB1
NM_000431MVK1
NM_018662DISC11
NM_001012957DISC11
NM_018351FGD61
XM_939186GPSM11
NM_012402ARFIP21
NM_001295CCR11
NM_0011126631
NM_006629ZNF2711
NM_001440EXTL31
NM_032892FRMD51
XM_001134365LOC7322831
NM_031453FAM107B1
NM_030664PTER1
NM_001001484PTER1
NM_130773CNTNAP51
NM_020786PDP21
NM_033542SYS11
NM_001037165FOXK11
NM_001992F2R1
NM_004760STK17A1
NM_053053TADA1L1
NM_001043SLC6A21
NM_007364TMED31
NM_014994MAPKBP11
XM_001127160LOC7307741
XM_001126868LOC7282091
NM_016143NSFL1C1
NM_182483NSFL1C1
NM_018839NSFL1C1
NM_015555ZNF4511
NM_001031623ZNF4511
NM_018689KIAA11991
NM_030918SNX271
NM_058237KIAA16221
NM_005226EDG31
NM_017831RNF1251
NM_003426ZNF741
NM_138991BACE21
NM_138992BACE21
NM_012105BACE21
NM_182579C1orf1571
NM_005937MLLT61
NM_006319CDIPT1
NM_031918KLF161
NM_133463AMZ11
XM_927767LOC6535051
XM_927706LOC6445911
XM_928338LOC6535981
NM_001081472SPATA11
NM_001347DGKQ1
NM_000831GRIK31
NM_021821MRPS351
NM_005297MCHR11
NM_017709FAM46C1
NM_001043352TPM31
NM_001043353TPM31
NM_153649TPM31
NM_001043351TPM31
NM_022060ABHD41
NM_001031715IQCH1
NM_022784IQCH1
NM_001010867C1orf691
NM_006261PROP11
NM_000494COL17A11
NM_005088CXYorf31
NM_014661FAM53B1
XM_001131577FLJ366441
XM_001126095FLJ366441
NM_000741CHRM41
XM_938203C1orf1671
XM_209234C1orf1671
NM_013348KCNJ141
NM_170720KCNJ141
NM_145060C18orf241
NM_001039535C18orf241
NM_031439SOX71
NM_0010983981
NM_004371COPA1
NM_014228SLC6A71
NM_002653PITX11
NM_020208SLC6A201
NM_022405SLC6A201
NM_173195KCNIP21
NM_173194KCNIP21
NM_173191KCNIP21
NM_014591KCNIP21
NM_173192KCNIP21
NM_173193KCNIP21
NM_021145DMTF11
XM_944601LOC6513271
XM_373925LOC3888131
NM_001040285PAPD51
NM_001040284PAPD51
NM_006275SFRS61
NM_001845COL4A11
NM_133443GPT21
NM_000554CRX1
NM_001008390CGGBP11
NM_003663CGGBP11
NM_006005WFS11
NM_001025356TMEM16F1
NM_021250LILRA51
NM_181985LILRA51
NM_001040441ZBTB81
XM_001124597LOC7304111
XM_944991C14orf821
XM_498578C14orf821
NM_031435THAP21
XM_001125704LOC7277781
NM_015458MTMR91
NM_003337UBE2B1
NM_207444FLJ356951
NM_147189FAM110B1
NM_001718BMP61
NM_001008530LGMN1
NM_005606LGMN1
NM_002340LSS1
NM_001011703FAM125B1
NM_024523GCC11
NM_024706ZNF6681
NM_005056JARID1A1
NM_001042603JARID1A1
NM_030952NUAK21
NM_018036C14orf1031
NM_024541C10orf761
NM_014766SCRN11
NM_000706AVPR1A1
NM_001018108SERF21
NM_198586NHLRC11
NM_000569FCGR3A1
NM_178171GSDM11
NM_001030005CPLX31
NM_024947PHC31
NM_033035TSLP1
NM_138551TSLP1
NM_000570FCGR3B1
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_001002926TWISTNB1
NM_152429FGFBP31
NM_018364RSBN11
NM_014048MKL21
NM_005153USP101
NM_001012756ZNF2601
NM_175060CLEC14A1
NM_130799MEN11
NM_130801MEN11
NM_000244MEN11
NM_130803MEN11
NM_130800MEN11
NM_130804MEN11
NM_130802MEN11
NM_181744OPN51
NM_001030051OPN51
NM_032966BLR11
NM_001716BLR11
NM_0321731
NM_032303HSDL21
NM_014412CACYBP1
NM_001007214CACYBP1
NM_003640IKBKAP1
NM_005669REEP51
NM_000092COL4A41
NM_006861RAB351
NM_000800FGF11
NM_033137FGF11
NM_033136FGF11
NM_001682ATP2B11
NM_001001323ATP2B11
NM_153369KIAA19191
NM_030769NPL1
XM_001129439LOC7308771
XM_001127905LOC7281961
NM_006454MXD41
NM_080669SLC46A11
XM_942191LOC6446861
NM_198682GYPE1
NM_0010988141
NM_152395NUDT161
NM_001918DBT1
NM_152253CHKB1
NM_152247CPT1B1
NM_001040709SYPL21
NM_024769ASAM1
NM_014662DEPDC51
NM_001010903DKFZp779B15401
NM_012262HS2ST11
NM_133259LRPPRC1
NM_020724RNF1501
NM_0010992781
NM_017770ELOVL21
NM_030812ACTL81
NM_003983SLC7A61
NM_001076785SLC7A61
NM_003779B4GALT31
NM_134268CYGB1
NM_013248NXT11
NM_144654C9orf1161
NM_001048265C9orf1161
NM_207119LRRC201
NM_018239LRRC201
NM_018205LRRC201
XM_001132972LOC7291871
XM_001132549LOC7311801
XM_499348MGC573591
XM_001127525LOC7303071
XM_496899LOC4412581
XM_929470LOC6439091
XM_001127430LOC7303041
NM_001004351MGC573591
NM_019034RHOF1
NM_002214ITGB81
NM_018381FLJ112861
NM_025165ELL31
NM_033631LUZP11
NM_016631C21orf661
NM_017991FLJ100811
NM_017860C1orf561
NM_0204591
NM_053042KIAA17291
NM_006122MAN2A21
NM_0209501
NM_130385MRVI11
NM_0011001631
NM_0010985791
NM_0011001671
NM_130847AMOTL11
NM_014773KIAA01411
NM_000961PTGIS1
NM_182935MOBP1
NM_001033723ZNF7041
NM_024701ASB131
NM_023073FLJ132311
NM_153487MDGA11
NM_022091ASCC31
XM_001132876LOC7288671
XM_001133466LOC7313381
NM_012458TIMM131
NM_203395IYD1
NM_021648TSPYL41
NM_001013693LDLRAD21
NM_020675SPC251
NM_006556PMVK1
NM_017596KIF21B1
NM_024589ROGDI1
NM_033116NEK91
NM_080548PTPN61
NM_002831PTPN61
NM_004655AXIN21
NM_014384ACAD81
XM_001126926LOC7279341
XM_001133457LOC7317721
NM_021935PROK21
NM_004155SERPINB91
NM_006774INMT1
NM_032590FBXL101
NM_001005366FBXL101
NM_173564FLJ375381
NM_001040424PRDM151
NM_000139MS4A21
NM_022451NOC3L1
NM_181489ZNF4451
XM_001128301LOC7280561
NM_016240SCARA31
NM_006348COG51
NM_181733COG51
NM_057174PEX161
XM_943034LOC6430851
XM_931304LOC6430851
NM_001080509TSPAN111
XM_940107TSPAN111
NM_004420DUSP81
NM_018192LEPREL11
NM_173584EFCAB4A1
NM_005736ACTR1A1
NM_015001SPEN1
NM_002971SATB11
XM_944029LOC6479791
NM_001025100MBP1
NM_203463LASS61
NM_139075TPCN21
NM_001008539SLC7A21
NM_003046SLC7A21
NM_015074KIF1B1
NM_025027ZNF6061
NM_001077637LOC1507861
NM_032144RAB6C1
NM_198896RAB6A1
NM_002869RAB6A1
NM_002010FGF91
NM_0010854811
NM_022818MAP1LC3B1
NM_020699GATAD2B1
NM_024293C2orf171
NM_001004306MGC876311
NM_0251851
NM_000674ADORA11
NM_001048230ADORA11
NM_005665EVI51
NM_001003407ABLIM11
NM_001003408ABLIM11
NM_002313ABLIM11
NM_006720ABLIM11
NM_004929CALB11
NM_014905GLS1
XM_939083TTC281
XM_929318TTC281
XM_930431LOC6451951
XM_942574LOC6451951
NM_145061C13orf31
NM_0010992211
NM_199328CLDN81
NM_014396VPS411
NM_080631VPS411
NM_001669ARSD1
NM_018228C14orf1151
NM_139076CCDC981
XM_001132090LOC7300151
NM_004815ARHGAP291
NM_152346SLC43A21
NM_138348FAM105B1
NM_015185ARHGEF91
NM_018414ST6GALNAC11
NM_006544EXOC51
NM_007198PROSC1
NM_138450ARL111
NM_001031617COX191
NM_138924GAMT1
NM_001030288SPN1
NM_003123SPN1
XM_001125293LOC7277251
NM_153260LRRC571
NM_175924ILDR11
NM_021916ZNF701
NM_020748INTS21
NM_1779662'-PDE1
NM_015064ERC11
NM_178039ERC11
NM_178040ERC11
NM_178038ERC11
NM_178037ERC11
NM_004932CDH61
NM_004093EFNB21
NM_052811TRIM131
NM_213590TRIM131
NM_001007278TRIM131
NM_005798TRIM131
NM_005828WDR681
NM_033393KIAA17271
NM_022129PBLD1
NM_153338GGT61
NM_005044PRKX1
NM_207333ZNF3201
NM_173344ST3GAL11
NM_003033ST3GAL11
NM_198564FLJ442901
NM_152903KBTBD61
NM_018644B3GAT11
NM_054025B3GAT11
NM_016346NR2E31
NM_031492RBM4B1
NM_006420ARFGEF21
NM_015012TMEM41B1
NM_147188FBXO221
NM_023076C16orf281
NM_178422PAQR71
NM_194449PHLPP1
NM_006656NEU31
NM_001029939ZFAT11
NM_001013659ZNF7931
NM_139018CD300LF1
NM_145693LPIN11
NM_014039C11orf541
NM_048368CTDP11
NM_004715CTDP11
NM_001008504OPRM11
NM_000217KCNA11
XM_940069PPP1R3E1
XM_927029PPP1R3E1
NM_033656BRWD11
NM_000084CLCN51
NM_001002026CLDN181
NM_016369CLDN181
NM_007257PNMA21
NM_001042492NF11
NM_000267NF11
NM_001001685FLJ450791
NM_001081CUBN1
NM_021151CROT1
NM_001024074HNMT1
XM_932515MIA31
XM_943832MIA31
NM_145796POGZ1
NM_004843IL27RA1
NM_024611NARG21
NM_001018089NARG21
NM_032169ACAD111
NM_020433JPH21
NM_203302MGC708631
NM_203477MGC708631
NM_023077C1orf1631
NM_014701KIAA02561
NM_004731SLC16A71
NM_001393ECM21
NM_003877SOCS21
NM_000629IFNAR11
NM_176816CCDC1251
NM_016484PDZD111

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317