Automatic recommendation
Not OK - siRNA is not specific
148 hits were found for AUUGCACCUGUAUUCCCAU (71 guide strand hits and 77 sense strand hits.)
Hits to Guide strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
XM_932802 | LOC645307 | 332 | 350 | c | U | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 3875 | |||
XM_498647 | LOC440386 | 333 | 351 | c | U | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 3886 | |||
NM_183397 | PXMP4 | 2995 | 3013 | c | U | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 5528 | |||
NM_001490 | GCNT1 | 4514 | 4532 | c | U | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 5536 | |||
NM_007238 | PXMP4 | 3194 | 3212 | c | U | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 5727 | |||
NM_020844 | KIAA1456 | 47 | 65 | c | U | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 82 | 3 | 11 | false | <90% | 5759 | |||
NM_002119 | HLA-DOA | 1940 | 1958 | c | U | c | G | C | A | C | C | U | G | U | A | U | U | C | C | C | A | g | 73 | 3 | 15 | bc | false | <90% | 3485 | ||
NR_002723 | GABPAP | 18393 | 18411 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 194142 | |||
NR_002894 | HIATL2 | 623 | 641 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 802 | |||
XM_001125291 | LOC730414 | 145 | 163 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 1114 | |||
XM_001130192 | KIAA1160 | 1254 | 1272 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 1336 | |||
NM_001004332 | FLJ41170 | 1594 | 1612 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 1725 | |||
NM_020701 | ISY1 | 1627 | 1645 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 1775 | |||
NM_014285 | EXOSC2 | 1509 | 1527 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2001 | |||
NR_002193 | RBMY2FP | 1398 | 1416 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | a | 71 | 4 | 10 | false | <90% | 2057 | |||
NM_152509 | FLJ31568 | 1977 | 1995 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2136 | |||
NM_144984 | C10orf72 | 2056 | 2074 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2170 | |||
NM_058238 | WNT7B | 2091 | 2109 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2250 | |||
NM_016011 | MECR | 2086 | 2104 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2307 | |||
NM_146388 | MRPL4 | 1312 | 1330 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2404 | |||
NM_001024732 | MECR | 2213 | 2231 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2434 | |||
NM_001013706 | LSDP5 | 1909 | 1927 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2445 | |||
NM_174977 | SEC14L4 | 2023 | 2041 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2499 | |||
NM_153338 | GGT6 | 1998 | 2016 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2528 | |||
NM_145174 | DNAJB7 | 1327 | 1345 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2578 | |||
XM_939897 | SIRPB2 | 2511 | 2529 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2642 | |||
XM_209363 | SIRPB2 | 2511 | 2529 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2642 | |||
NM_021181 | SLAMF7 | 2166 | 2184 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2672 | |||
NM_017924 | C14orf119 | 2506 | 2524 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2855 | |||
NM_031306 | DDX59 | 2730 | 2748 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 2900 | |||
NM_198212 | CAV2 | 2113 | 2131 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3144 | |||
NM_078473 | TM2D2 | 2609 | 2627 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3252 | |||
NM_001233 | CAV2 | 2301 | 2319 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3332 | |||
NM_001024381 | TM2D2 | 2691 | 2709 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3334 | |||
NM_198562 | C3orf62 | 1460 | 1478 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3346 | |||
NM_001024380 | TM2D2 | 2792 | 2810 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3435 | |||
NR_003366 | ANKRD20B | 47155 | 47173 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 96524 | |||
NM_031940 | TM2D2 | 2998 | 3016 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3641 | |||
NM_032433 | ZNF333 | 2861 | 2879 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3767 | |||
XM_001134358 | LOC732273 | 2668 | 2686 | g | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 3824 | |||
NM_001010980 | C1orf130 | 2361 | 2379 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | c | 71 | 4 | 10 | false | <90% | 3953 | |||
NM_012347 | FBXO9 | 2039 | 2057 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4438 | |||
NM_001010913 | C1orf140 | 3700 | 3718 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4492 | |||
NM_033481 | FBXO9 | 2166 | 2184 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4565 | |||
NM_033480 | FBXO9 | 2289 | 2307 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4688 | |||
NM_015174 | KIAA1086 | 3282 | 3300 | u | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4757 | |||
NR_003262 | FDPSL2A | 2525 | 2543 | c | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 4981 | |||
NM_004808 | NMT2 | 4633 | 4651 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 5004 | |||
XM_087353 | UBXD7 | 4565 | 4583 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 5008 | |||
XM_936412 | UBXD7 | 4594 | 4612 | c | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 5037 | |||
NM_020405 | PLXDC1 | 3874 | 3892 | g | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 6140 | |||
NM_006464 | TGOLN2 | 5012 | 5030 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 6345 | |||
NM_133478 | SLC4A5 | 4637 | 4655 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 6364 | |||
XM_932515 | MIA3 | 6343 | 6361 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 6531 | |||
XM_943832 | MIA3 | 6343 | 6361 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 6531 | |||
NM_020802 | KIAA1377 | 4424 | 4442 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 7043 | |||
NR_002791 | EMX2OS | 4197 | 4215 | c | g | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 7282 | |||
NM_152529 | GPR155 | 4861 | 4879 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 7324 | |||
NM_001033045 | GPR155 | 5010 | 5028 | u | g | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 7473 | |||
NM_020340 | KIAA1244 | 8527 | 8545 | g | a | U | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 71 | 4 | 10 | false | <90% | 8658 | |||
NM_133493 | CD109 | 6976 | 6994 | c | a | U | G | C | A | C | C | U | G | U | A | g | U | C | C | C | A | c | 71 | 4 | 10 | false | <90% | 9447 | |||
NM_005755 | EBI3 | 1011 | 1029 | A | U | c | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | g | 65 | 3 | 9 | false | <90% | 1149 | |||
NR_002723 | GABPAP | 11481 | 11499 | u | g | g | G | C | A | C | C | U | G | U | A | U | U | C | C | C | A | g | 62 | 4 | 15 | bc | false | <90% | 194142 | ||
NM_007163 | SLC14A2 | 4021 | 4039 | c | g | g | G | C | A | C | C | U | G | U | A | U | U | C | C | C | A | g | 62 | 4 | 15 | bc | false | <90% | 4166 | ||
NM_173829 | P18SRP | 4347 | 4365 | c | a | g | G | C | A | C | C | U | G | U | A | U | U | C | C | C | A | g | 62 | 4 | 15 | bc | false | <90% | 6856 | ||
NM_017651 | AHI1 | 4497 | 4515 | c | a | g | G | C | A | C | C | U | G | U | A | a | U | C | C | C | A | U | 56 | 4 | 9 | false | <90% | 5538 | |||
NM_001407 | CELSR3 | 3468 | 3486 | A | a | U | G | C | A | C | C | U | G | U | c | U | U | C | C | C | A | g | 49 | 3 | 9 | false | <90% | 11974 | |||
NM_000791 | DHFR | 2648 | 2666 | c | g | c | a | C | A | C | C | U | G | U | A | U | U | C | C | C | A | U | 30 | 4 | 15 | bc | false | <90% | 3932 | ||
NM_004755 | RPS6KA5 | 2651 | 2669 | A | U | U | G | C | A | C | C | U | u | U | A | U | U | C | C | C | u | c | 9 | 3 | 9 | c | false | <90% | 3883 | ||
XM_941485 | LOC652147 | 4612 | 4630 | A | U | U | G | C | A | C | C | U | c | U | c | U | U | C | C | C | A | c | -21 | 3 | 9 | false | <90% | 4869 | |||
NM_014438 | IL1F8 | 907 | 925 | A | U | U | G | C | u | C | C | U | G | a | A | U | U | C | C | C | A | c | -29 | 3 | 7 | c | false | <90% | 1182 |
Hits to Sense strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
NM_139164 | STARD4 | 1018 | 1036 | c | U | G | G | G | A | A | U | A | C | A | G | G | U | G | C | A | c | g | 90 | 3 | 16 | ac | false | <90% | 2264 | ||
XM_001128525 | LOC344595 | 1187 | 1205 | A | c | u | G | G | A | A | U | A | C | A | G | G | U | u | C | A | A | U | 44 | 3 | 11 | c | false | <90% | 1340 | ||
XM_943541 | LOC344595 | 1187 | 1205 | A | c | u | G | G | A | A | U | A | C | A | G | G | U | u | C | A | A | U | 44 | 3 | 11 | c | false | <90% | 1340 | ||
NM_032856 | WDR73 | 1604 | 1622 | A | U | G | G | G | A | A | c | A | C | A | G | G | U | G | C | A | c | U | 35 | 2 | 9 | c | false | <90% | 1855 | ||
NM_006565 | CTCF | 2319 | 2337 | A | c | c | a | G | A | A | U | A | C | A | G | G | U | G | C | A | A | U | 32 | 3 | 15 | bc | false | <90% | 3797 | ||
NM_022080 | NAPB | 2561 | 2579 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | U | 29 | 3 | 10 | c | false | <90% | 3798 | ||
NR_001286 | LOC260339 | 2688 | 2706 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | A | g | 26 | 3 | 11 | bc | false | <90% | 2768 | ||
NM_000151 | G6PC | 2469 | 2487 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | A | g | 26 | 3 | 11 | bc | false | <90% | 3096 | ||
NM_002971 | SATB1 | 380 | 398 | u | U | G | G | G | A | g | U | A | C | A | G | G | U | G | C | A | A | a | 26 | 3 | 11 | bc | false | <90% | 3782 | ||
NR_002723 | GABPAP | 31513 | 31531 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 194142 | ||
NR_002723 | GABPAP | 37391 | 37409 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 194142 | ||
NR_002723 | GABPAP | 49187 | 49205 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 194142 | ||
NR_002723 | GABPAP | 182501 | 182519 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 194142 | ||
XM_001132091 | LOC731208 | 830 | 848 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 1133 | ||
NM_182854 | SLIC1 | 1245 | 1263 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 1457 | ||
NM_014402 | UQCRQ | 852 | 870 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | g | g | 24 | 4 | 10 | c | false | <90% | 1585 | ||
NM_058219 | EXOSC6 | 1186 | 1204 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 1729 | ||
NM_001001414 | LOC342897 | 1533 | 1551 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 1973 | ||
NM_004549 | NDUFC2 | 1812 | 1830 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2159 | ||
NM_022164 | TINAGL1 | 1926 | 1944 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | c | 24 | 4 | 10 | c | false | <90% | 2177 | ||
NM_001039212 | FLJ37078 | 139 | 157 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 2245 | ||
NM_203307 | ZNF321 | 1301 | 1319 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2334 | ||
NM_197949 | CLEC7A | 1043 | 1061 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2365 | ||
NM_197950 | CLEC7A | 1063 | 1081 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2385 | ||
NM_001024593 | ZMYND17 | 1739 | 1757 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 2433 | ||
NM_022570 | CLEC7A | 1162 | 1180 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2484 | ||
NM_197948 | CLEC7A | 1181 | 1199 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2503 | ||
NM_152829 | TES | 2044 | 2062 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2603 | ||
NM_197947 | CLEC7A | 1300 | 1318 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2622 | ||
NM_015084 | MRPS27 | 1752 | 1770 | g | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | a | 24 | 4 | 10 | c | false | <90% | 2631 | ||
NM_001080407 | GLB1L3 | 2229 | 2247 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 2706 | ||
NM_015641 | TES | 2206 | 2224 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 2766 | ||
NM_182703 | ANKDD1A | 1599 | 1617 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 3126 | ||
NM_022901 | LRRC19 | 2302 | 2320 | c | U | G | G | G | A | g | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 3160 | ||
NR_002947 | TCAM1 | 2195 | 2213 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 3291 | ||
NM_022725 | FANCF | 1962 | 1980 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | g | g | 24 | 4 | 10 | c | false | <90% | 3309 | ||
NM_006235 | POU2AF1 | 2739 | 2757 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 3314 | ||
NR_003366 | ANKRD20B | 8659 | 8677 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 96524 | ||
XR_016018 | LOC729739 | 2083 | 2101 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 3601 | ||
NM_001001789 | C21orf24 | 1459 | 1477 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 3620 | ||
XM_001131501 | FLJ90231 | 3214 | 3232 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 3691 | ||
NM_031904 | FKSG44 | 3266 | 3284 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 3693 | ||
NR_003135 | CEP170L | 43337 | 43355 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 90477 | ||
NM_017877 | C2orf18 | 1753 | 1771 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | a | 24 | 4 | 10 | c | false | <90% | 3912 | ||
NM_001655 | ARCN1 | 2164 | 2182 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 3916 | ||
NM_206926 | SEPN1 | 3354 | 3372 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 4255 | ||
NM_020451 | SEPN1 | 3456 | 3474 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 4357 | ||
NM_182612 | PDDC1 | 3230 | 3248 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 4378 | ||
NM_020367 | PARP11 | 2871 | 2889 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | a | 24 | 4 | 10 | c | false | <90% | 4486 | ||
NM_004776 | B4GALT5 | 2838 | 2856 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 4646 | ||
NM_006969 | ZNF28 | 4075 | 4093 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 4675 | ||
NM_004286 | GTPBP1 | 4287 | 4305 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 5074 | ||
NM_014897 | ZNF652 | 3936 | 3954 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5428 | ||
NM_020390 | EIF5A2 | 1637 | 1655 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5537 | ||
NM_024312 | GNPTAB | 5193 | 5211 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5631 | ||
NM_194282 | LIN54 | 3695 | 3713 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5772 | ||
NM_017831 | RNF125 | 2869 | 2887 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 5888 | ||
NM_001044388 | ZNF557 | 2495 | 2513 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5981 | ||
NM_001044387 | ZNF557 | 2504 | 2522 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 5990 | ||
NM_024341 | ZNF557 | 2516 | 2534 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | u | g | 24 | 4 | 10 | c | false | <90% | 6002 | ||
NM_005665 | EVI5 | 4764 | 4782 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 7403 | ||
NR_002819 | MALAT1 | 8307 | 8325 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 8352 | ||
NM_032160 | DSEL | 8630 | 8648 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 9281 | ||
XM_940811 | KIAA1462 | 8886 | 8904 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 9282 | ||
XM_929312 | KIAA1462 | 8886 | 8904 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 9282 | ||
XM_944819 | KIAA1462 | 8993 | 9011 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 9389 | ||
XM_166132 | KIAA1462 | 8993 | 9011 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | a | 24 | 4 | 10 | c | false | <90% | 9389 | ||
NR_003265 | SDHALP2 | 6986 | 7004 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 30843 | ||
NR_003264 | SDHALP1 | 6967 | 6985 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 30398 | ||
NR_003266 | LOC220729 | 6977 | 6995 | c | U | G | G | G | A | c | U | A | C | A | G | G | U | G | C | A | c | g | 24 | 4 | 10 | c | false | <90% | 15309 | ||
NM_007048 | BTN3A1 | 3019 | 3037 | c | U | G | G | G | A | A | U | A | u | A | G | G | U | G | C | A | c | g | 7 | 4 | 8 | c | false | <90% | 3416 | ||
NM_006827 | TMED10 | 3338 | 3356 | c | U | G | G | G | A | A | U | A | u | A | G | G | U | G | C | A | c | a | 7 | 4 | 8 | c | false | <90% | 4163 | ||
NM_033143 | FGF5 | 3543 | 3561 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | a | C | A | A | U | 6 | 3 | 7 | c | false | <90% | 5295 | ||
NM_004464 | FGF5 | 3647 | 3665 | c | U | G | G | G | A | u | U | A | C | A | G | G | U | a | C | A | A | U | 6 | 3 | 7 | c | false | <90% | 5399 | ||
NM_015272 | KIAA1005 | 3463 | 3481 | A | U | G | G | G | A | u | U | A | C | A | G | G | U | G | C | c | u | g | 2 | 4 | 9 | c | false | <90% | 6199 | ||
NM_004792 | PPIG | 221 | 239 | A | U | G | G | G | A | A | U | A | a | A | G | G | U | u | C | A | A | c | -12 | 3 | 9 | c | false | <90% | 2717 | ||
NM_022153 | C10orf54 | 2000 | 2018 | A | U | G | G | G | g | A | a | A | C | A | G | G | U | G | C | A | A | a | -30 | 3 | 10 | bc | false | <90% | 4774 |
3 prime UTR Seed matches
Hits to same gene : 0
Hits to other genes : 1767
View matched accessions
3 prime seed match details
Immunostimulatory motif search results
UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).
GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).
Settings used for search
Scores were calculated using scoring scheme SS1
Using AVG scoring mode.
Hit scores
Parameter | Spec. Score cut-off | Colour | Comment |
Hit to same gene | Colour | Hits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit. | |
High scoring hit | ≥80 | Colour | Hits are very likely to cause an off-target effect |
Medium scoring hit | <80¸≥40 | Colour | Hits with a small chance of causing an off target effect. |
Low scoring hit | Colour | Hits very unlikely to cause an off-target effect |
The mismatches are colour coded based on the weighting of that position.
Cut-off | Colour |
Match | Colour |
Wobble base pairs (G-U) | Colour |
Critical bases (none) | Colour |
0.6 bits | Colour |
0.4 bits | Colour |
0.2 bits | Colour |
SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).
Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer