Predicted Off-targets for siRNA "ggucaccuuugacagacug" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

10 hits were found for GGUCACCUUUGACAGACUG (5 guide strand hits and 5 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_182486 C1QTNF6 212 230 GcUCACCUUUGACAGAgcu57 4 14 ac false   <90%   1670
NM_031910 C1QTNF6 212 230 GcUCACCUUUGACAGAgcu57 4 14 ac false   <90%   2954
NM_002039 GAB1 2986 3004 uugCACCUUUGAaAGACUG56 4 9   false   <90%   3323
NM_207123 GAB1 3076 3094 uugCACCUUUGAaAGACUG56 4 9   false   <90%   3413
NM_198150 ARSK 889 907 GGUCACCUUUGuCAGAaau35 4 11   false   <90%   3345


Hits to Sense strand






AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_003243 TGFBR3 1688 1706 CuGUCUGUCAAAuGUGACa73 3 10   false   <90%   4199
NM_172364 CACNA2D4 3467 3485 gccUCUGUCAAAuGUGACC56 4 9   false   <90%   5343
NM_015989 CSAD 1613 1631 aAGgCUGUCAAAGGUGgCC37 3 12 c false   <90%   2648
NM_024857 ATAD5 2491 2509 CAGUagGUCAAAGGUGACu-19 3 12 bc false   <90%   6245
XM_001134002 C17orf41 2512 2530 CAGUagGUCAAAGGUGACu-19 3 12 bc false   <90%   6783


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1357
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_007030TPPP7
NM_152914MGC338944
NM_138972BACE13
NM_012104BACE13
NM_138973BACE13
NM_138971BACE13
NM_001014797KCNMA13
NM_001037165FOXK13
NM_021961TEAD13
NM_012448STAT5B3
NM_199054MKNK23
NM_003045SLC7A13
NM_001025247TAF5L2
NM_033446FAM125B2
NM_018085IPO92
NM_175736FMNL32
NM_198900FMNL32
NM_000262NAGA2
NM_014665LRRC142
NM_001083621ZBTB402
NM_014870ZBTB402
NM_001433ERN12
NM_176871PDLIM22
NM_173463DKFZp761B1072
NM_015338ASXL12
NM_201266NRP22
NM_003872NRP22
NM_201279NRP22
NM_177972TUB2
NM_003320TUB2
NM_0010976202
NM_001039709CBFA2T22
NM_001032999CBFA2T22
NM_005093CBFA2T22
NM_018303EXOC22
NM_006374STK252
NM_017563IL17RD2
NM_001080973IL17RD2
NM_005895GOLGA32
XM_001125756LOC7277882
NM_005160ADRBK22
NM_014754PTDSS12
XM_944835LOC6486912
NM_015995KLF132
NM_015313ARHGEF122
NM_013345GPR1322
NM_001008737LOC4010522
NM_015042ZNF6092
NM_017671C20orf422
NM_003966SEMA5A2
NM_001040445ASB12
NM_030626LRRC272
NM_032538TTBK12
NM_004749TBRG42
NM_030900TBRG42
NM_199122TBRG42
NM_001024227ARF12
NM_001658ARF12
NM_001024228ARF12
NM_001024226ARF12
NM_173832ZFP412
NM_004594SLC9A52
NM_001039966GPR302
NM_001505GPR302
NM_0010982012
NM_014873LPGAT12
NM_130807MOBKL2A2
NM_025104DBF4B2
NM_004933CDH152
NM_024963FBXL182
NM_002221ITPKB2
NM_1735692
NM_006668CYP46A12
NM_015288PHF152
NM_003505FZD12
NM_014786ARHGEF172
NM_173551ANKS62
NM_054111IHPK31
NM_006948STCH1
NM_015061JMJD2C1
NM_032810ATAD11
NM_006974ZNF33A1
NM_006954ZNF33A1
NM_006955ZNF33B1
NM_003221TFAP2B1
NM_002655PLAG11
NM_003006SELPLG1
NM_002077GOLGA11
NM_138400NOM11
NM_006038SPATA21
NM_024295DERL11
NM_020742NLGN4X1
NM_181332NLGN4X1
NM_199186BPGM1
NM_001724BPGM1
NM_020448NPAL31
NM_015949C7orf201
NM_001004351MGC573591
NM_022755IPPK1
NM_001565CXCL101
NM_001001692FLJ451391
NM_000232SGCB1
NM_007050PTPRT1
NM_133170PTPRT1
NM_032780TMEM251
NM_025164KIAA09991
NM_133445GRIN3A1
XM_291671RBM201
XM_939337RBM201
NM_014906PPM1E1
NM_0146921
NM_017919STX171
NM_000651CR11
NM_000573CR11
NM_0010985251
NM_018204CKAP21
NM_030767AKNA1
NM_024333FSD11
NM_207445FLJ395311
NM_020440PTGFRN1
NM_005181CA31
NM_024881SLC35E11
NM_001430EPAS11
NM_015879ST8SIA31
NM_0010987871
NM_016526BET1L1
NM_006393NEBL1
NM_006825CKAP41
NM_198928PYHIN11
NM_152501PYHIN11
NM_015254KIF13B1
NM_002032FTH11
NM_015090NFASC1
NM_001080410FBXO411
XM_001133261FBXO411
NM_020122KCMF11
NM_052848CCDC971
NM_133371MYOZ31
XM_001132246LOC7299971
NM_024887DHDDS1
NM_205861DHDDS1
NM_030809FAM130A11
NM_020731AHRR1
NM_003463PTP4A11
NM_206866BACH11
NM_001186BACH11
NM_001420ELAVL31
NM_032281ELAVL31
NM_000855GUCY1A21
NM_021624HRH41
NM_013943CLIC41
NM_001014980FAM132A1
NM_022153C10orf541
NM_020227PRDM91
XM_379100LOC4009581
XM_945436LOC4009581
NM_024569MPZL11
NM_003953MPZL11
NM_173471SLC25A261
NM_004662DNAH91
NM_001372DNAH91
NM_022842CDCP11
NM_001048212CEMP11
NM_032730RTN4IP11
NM_207348SLC25A341
NM_152309PIK3AP11
NM_014598SOCS71
XM_936572SOCS71
NM_2073601
NM_022898BCL11B1
NM_138576BCL11B1
NM_0010992721
NM_152733BTBD91
NM_0528931
NM_182749N6AMT11
NM_013240N6AMT11
NM_017801CMTM61
NM_181654CPLX41
NM_0011014041
NM_002062GLP1R1
NM_006643SDCCAG31
NM_001039708SDCCAG31
NM_001039707SDCCAG31
XM_001132928LOC7289691
NM_153332THEX11
NM_145263SPATA181
XM_933539MGC30321
XM_944529MGC30321
NM_152563FAM86C1
NM_018172FAM86C1
NM_0010996531
XM_001129932LOC6453321
NM_024541C10orf761
NM_181283CMTM11
NM_181270CMTM11
NM_181268CMTM11
NM_181296CMTM11
NM_017723C9orf1671
NM_020705TBC1D241
NM_004807HS6ST11
NM_182831TNT1
NM_031904FKSG441
NM_006646WASF31
NM_181701QSOX21
NM_022169ABCG41
NM_000332ATXN11
NM_001271CHD21
XM_001129284LOC7290881
XM_001133596LOC7324301
NM_006918SC5DL1
NM_001024956SC5DL1
NM_014002IKBKE1
NM_006934SLC6A91
NM_001024845SLC6A91
NM_201649SLC6A91
NM_001093ACACB1
NM_198458ZNF4971
NM_178422PAQR71
NM_020435GJA121
NM_032193RNASEH2C1
XM_939915LOC4013211
XM_379483LOC4013211
XM_380099LOC4013211
NM_001083537FAM86B11
NM_205858NMB1
NM_021077NMB1
NM_015086DDN1
NM_020917ZFP141
NM_005082TRIM251
NM_024685BBS101
NM_003644GAS71
NM_201432GAS71
NM_201433GAS71
NM_007067MYST21
NM_014567BCAR11
NM_014470RND11
NM_032781PTPN51
NM_001039970PTPN51
NM_006906PTPN51
NM_153456HS6ST31
NM_173660DOK71
NM_001002034FAM109B1
NM_007078LDB31
NM_001080114LDB31
XM_939663KIAA15531
NM_001080450KIAA15531
NM_006505PVR1
NM_003851CREG11
NM_005374MPP21
NM_021970MAP2K1IP11
NM_001631ALPI1
NM_002245KCNK11
NM_004863SPTLC21
NM_012309SHANK21
NM_015330SPECC1L1
NM_007014WWP21
NM_199424WWP21
NM_001080500LOC4021171
XM_937795LOC4021171
XM_001128535LOC7288061
NM_004624VIPR11
XM_001128275LOC3391921
XM_001128144LOC3391921
NM_020699GATAD2B1
NM_024334TMEM431
NM_017451BAIAP21
NM_005647TBL1X1
NM_020806GPHN1
NM_001024218GPHN1
NM_001080439HSF51
XM_939614HSF51
NM_002023FMOD1
NM_023926ZSCAN181
NM_001024937MINK11
NM_170663MINK11
NM_153827MINK11
NM_015716MINK11
NM_181803UBE2C1
NM_014048MKL21
NM_0011031671
NM_175907ZADH21
NM_022170EIF4H1
NM_031992EIF4H1
NM_001079512LOC7807761
NM_144669GLT1D11
NM_031431COG31
NM_016138COQ71
NM_017488ADD21
NM_014909VASH11
NM_145230ATP6V0E21
NM_001025109CD341
NM_001773CD341
NM_181808POLN1
NM_033512TSPYL51
NM_001083913C10orf261
NM_017787C10orf261
XM_001129019SAPS21
NM_002663PLD21
NM_0010988321
NM_032837FAM104A1
XM_940456FLJ221841
NM_001817CEACAM41
NM_019108C19orf611
NM_001024380TM2D21
NM_078473TM2D21
NM_001024381TM2D21
NM_031940TM2D21
NM_000031ALAD1
NM_001003945ALAD1
NM_024071ZFYVE211
NM_182580CYB561D11
NM_014862ARNT21
NM_001361DHODH1
NM_182487OLFML2A1
NM_178456C20orf851
NM_198282TMEM1731
NM_181336LEMD21
NM_0059611
NM_001001795MGC708571
NM_153360APCDD1L1
NM_001080436WTIP1
XM_939855WTIP1
NM_007065CDC371
NM_181351NCAM11
NM_000615NCAM11
NM_004419DUSP51
NM_006803AP3M21
NM_080669SLC46A11
NM_018271FLJ109161
NM_014442SIGLEC81
NM_173477USH1G1
NM_002632PGF1
XM_001134338LOC7322421
NM_005737ARL4C1
NM_000033ABCD11
NM_000201ICAM11
NM_012335MYO1F1
NM_207368LOC3482621
NM_0010937671
NM_004172SLC1A31
NM_004364CEBPA1
NM_002737PRKCA1
NM_001004342TRIM671
NM_153021PLB11
NM_207511C9orf1391
NM_024417FDXR1
NM_004110FDXR1
NM_001017989OPA31
NM_0011003901
NM_152558IQCE1
NM_021807EXOC41
NM_182643DLC11
NM_006094DLC11
NM_019106SEPT31
NM_014916LMTK21
XM_001125734LOC7277811
NM_005118TNFSF151
NM_213589RAPH11
NM_003528HIST2H2BE1
NM_0010996911
NM_003236TGFA1
NM_0010986381
NM_173468MOBKL1A1
NM_145013C11orf451
NM_004402DFFB1
NM_014553TFCP2L11
NM_021259TMEM81
NM_173558FGD21
NM_024667VPS37B1
NM_138959VANGL11
NM_0011132391
NM_022740HIPK21
NM_032578MYPN1
NM_003074SMARCC11
NM_016513ICK1
NM_014920ICK1
NM_012101TRIM291
NM_020714ZNF4901
XM_941325LOC6520251
NM_020310MNT1
NM_021168RAB40C1
NM_000261MYOC1
NM_001013640LOC3885031
NM_020133AGPAT41
NM_001039199C20orf1211
NM_024331C20orf1211
NM_138347ZNF5511
NM_001957EDNRA1
NM_0010985121
NM_006258PRKG11
NM_032932RAB11FIP41
NM_020632ATP6V0A41
NM_130840ATP6V0A41
NM_130841ATP6V0A41
NM_014707HDAC91
NM_182854SLIC11
NM_001003940BMF1
NM_001003943BMF1
NM_001003942BMF1
NM_033503BMF1
NM_005628SLC1A51
NM_0207801
NM_001001412FAM26C1
NM_001029883FLJ349311
NM_004204PIGQ1
NM_0011050791
NM_003766BECN11
NM_134445CD99L21
NM_134446CD99L21
NM_031462CD99L21
NM_001042520MGC130571
NM_001042521MGC130571
NM_001042519MGC130571
NM_032321MGC130571
NM_014157CCDC1131
NM_015571SENP61
NM_0011004091
NM_001010987IFIT1L1
NM_002486NCBP11
NM_198098AQP11
NM_0209111
NM_001695ATP6V1C11
NM_000824GLRB1
NM_001080543C19orf291
NM_001042486DLGAP41
NM_014902DLGAP41
NM_183006DLGAP41
NM_177549PRNT1
NM_000330RS11
NM_174929ZMIZ21
NM_031449ZMIZ21
NM_014515CNOT21
NM_021954GJA31
NM_182515ZNF7141
NM_138286ZNF6811
NM_014711CP1101
NM_201647STAMBP1
NM_006463STAMBP1
NM_213622STAMBP1
NM_030786SYNC11
XM_001126700LOC7281471
XM_001126645LOC7306381
NM_194293CMYA11
NM_014368LHX61
NM_199160LHX61
NM_024577SH3TC21
NM_020429SMURF11
NM_181349SMURF11
NM_138568EXOC3L21
NM_002776KLK101
NM_001077500KLK101
NM_145888KLK101
NM_001039130ALOX15B1
NM_001141ALOX15B1
NM_001039131ALOX15B1
NM_005933MLL1
NM_001001938C9orf471
NM_152482C19orf251
NM_198484ZNF6211
NM_0010984141
NM_001928CFD1
NM_017437CPSF21
NM_024039MIS121
NM_005596NFIB1
NM_004183BEST11
NM_004840ARHGEF61
NM_017754C6orf1071
NM_020168PAK61
NM_002210ITGAV1
NM_015367BCL2L131
NM_0207331
NM_003127SPTAN11
NM_015520MAGI11
NM_017640LRRC161
NM_002980SCTR1
NM_030937CCNL21
NM_001039577CCNL21
XM_001126014LOC7278771
NM_052909KIAA19091
NM_015983UBE2D41
NM_014729TOX1
NM_014507MCAT1
NM_173467MCAT1
NM_000641IL111
NM_013245VPS4A1
XM_936831IQSEC31
NM_005207CRKL1
NM_000913OPRL11
NM_182647OPRL11
NM_004210NEURL1
NM_017712PGPEP11
NM_005261GEM1
NM_181702GEM1
NM_007210GALNT61
NM_001083536FGD31
NM_033086FGD31
NM_020385REXO41
NM_152785GCET21
NM_001008756GCET21
NM_019594LRRC8A1
NM_001012991LOC4005061
NM_033221TRIM141
NM_014788TRIM141
NM_000084CLCN51
NM_016530RAB8B1
XM_943686SYT71
NM_015063SLC8A21
NM_002688SEPT51
NM_133444ZNF5261
NM_001261CDK91
NM_138368DKFZp761E1981
NM_001039905FLJ385961
XM_933903LOC6446621
XM_944785LOC6446621
NM_006383CIB21
NM_001009905B3GNTL11
NM_015621CCDC691
NM_006854KDELR21
NM_0011006031
NM_152854CD401
NM_176823S100A7A1
NM_001527HDAC21
NM_001607ACAA11
NM_000388CASR1
NM_001033930UBA521
NM_003333UBA521
NM_018036C14orf1031
NM_001012993C9orf1521
NM_005717ARPC51
NM_001039397FLJ402441
NM_006767LZTR11
NM_016653ZAK1
NM_001001994GPM6B1
NM_005278GPM6B1
NM_001001996GPM6B1
NM_015421TMEM1861
NM_0011003981
NM_015085GARNL41
NM_012189CABYR1
NM_153768CABYR1
NM_005215DCC1
XM_001130728C20orf1191
XM_001131956C20orf1191
NM_182898CREB51
NM_004904CREB51
NM_001011666CREB51
NM_182899CREB51
XM_928029RNF1871
XM_001129309RNF1871
NM_178171GSDM11
NM_001795CDH51
NM_181876PPP2R2C1
NM_020416PPP2R2C1
NM_033118MYLK21
NM_013313YPEL11
NM_012093AK51
NM_174858AK51
NM_001040285PAPD51
NM_001040284PAPD51
NM_138428C1orf2121
XM_001127710LOC7286531
NM_019032ADAMTSL41
NM_022750PARP121
NM_175738RAB371
NM_018662DISC11
NM_001012957DISC11
NM_203395IYD1
XM_379029LOC4008791
NM_004583RAB5C1
NM_201434RAB5C1
NM_006924SFRS11
NM_001078166SFRS11
NM_007112THBS31
NM_003021SGTA1
NM_024535CORO71
NM_024789TMEM1801
NM_175609ARFGAP11
NM_018209ARFGAP11
NM_130459TOR2A1
NM_0010853471
NM_153487MDGA11
NM_015471NSL11
NM_001042549NSL11
NM_000348SRD5A21
NM_017813IMPAD11
NM_177403RAB7B1
NM_175852TXLNA1
NM_003883HDAC31
NM_032753RAXL11
NM_004090DUSP31
NM_030915LBH1
XM_001132517LBH1
XM_001132511LBH1
NM_016606REEP21
NM_003763STX161
NM_001001433STX161
NM_000744CHRNA41
NM_014851KLHL211
NM_0010992941
XM_936510KIAA16441
NM_032174TOMM40L1
NM_006182DDR21
NM_001014796DDR21
NM_002250KCNN41
NM_053277CLIC61
NM_001024675C20orf1341
NM_019070DDX491
NM_174902LDLRAD31
NM_002339LSP11
NM_001013255LSP11
NM_001013253LSP11
NM_001013254LSP11
NM_001989EVX11
NM_014767SPOCK21
NM_014884SFRS141
NM_001014831PAK41
NM_001014835PAK41
NM_001014834PAK41
NM_005884PAK41
NM_001014832PAK41
NM_173542LOC1964631
NM_006702PNPLA61
NM_052839PANX21
NM_182791CCDC331
NM_173562KCTD201
NM_138793CANT11
NM_001008709PPP1CA1
NM_206873PPP1CA1
NM_002708PPP1CA1
NM_153254TTLL101
NM_025250TTYH31
NM_006087TUBB41
NM_004556NFKBIE1
NM_004845PCYT1B1
NM_001978EPB491
NM_0010937721
NM_000222KIT1
NM_022480KLHL251
NM_153347TMEM86A1
NM_003979GPRC5A1
NM_014481APEX21
NM_001365DLG41
NM_153040C15orf321
NM_015568PPP1R16B1
NM_014815THRAP41
NM_001079518THRAP41
NM_004943DMWD1
NM_005169PHOX2A1
NM_002224ITPR31
NM_002861PCYT21
NM_024722ACBD41
NM_020243TOMM221
NM_004093EFNB21
NM_198075LRRC561
NM_018667SMPD31
XM_939576KIAA19571
XM_065166KIAA19571
NM_079834SCAMP41
NM_001003809DLGAP11
NM_004746DLGAP11
XM_940966LOC6472191
NM_004655AXIN21
NM_014341MTCH11
NM_001005337PKP11
NM_000299PKP11
NM_207037TCF121
NM_003205TCF121
NM_207040TCF121
NM_207036TCF121
NM_207038TCF121
NM_015264C22orf91
NM_001009880C22orf91
NM_032493AP1M11
NM_020062SLC2A4RG1
XM_001131899LOC2839041
NM_002938RNF41
XM_929433LOC6440061
XM_939111LOC6500201
NM_030758OSBP21
NM_006187OAS31
NM_147134NFX11
NM_206922CRIP31
NM_001024596ZNF7721
NM_054014FKBP1A1
NM_145000RANBP3L1
NM_024318LILRA61
NM_001458FLNC1
NM_004816C9orf611
NM_014240LIMD11
NM_182894CHX101
NM_020947KIAA16091
NM_001125ADPRH1
NM_001039904FLJ448381
NM_032105PPP1R12B1
NM_002481PPP1R12B1
NM_018173PLEKHG61
NM_017415KLHL31
NM_020804PACSIN11
NM_006268DPF21
NM_177925H2AFJ1
NM_001800CDKN2D1
NM_079421CDKN2D1
NM_024866ADM21
NM_014911AAK11
NM_145912NFAM11
NM_014640TTLL41
NM_080752ZSWIM31
NM_006265RAD211
NM_001024455RGAG41
NM_133433NIPBL1
NM_145804ABTB21
NM_030576LIMD21
NM_015526CLIP31
NM_133334WHSC11
NM_015957APIP1
NM_006661PDE10A1
NM_032575GLIS21
NM_005027PIK3R21
NM_015651PHF191
NM_013385PSCD41
NM_201525GPR561
NM_201524GPR561
NM_005682GPR561
NM_017790RGS31
NM_0011110191
NM_145117NAV21
NM_182964NAV21
NM_0011110181
NM_021267LASS11
NM_015993PLLP1
XM_001132013ANKH1
NM_054027ANKH1
NM_016246HSD17B141
NM_001356DDX3X1
XM_937200RPTN1
NM_018229C14orf1081
NM_032376TMEM1011
NM_007283MGLL1
NM_001003794MGLL1
NM_000682ADRA2B1
NM_000455STK111
NM_003775EDG61
NM_001014435CA71
NM_005182CA71
NM_172208TAPBP1
NM_001040169HTR41
NM_199453HTR41
NM_017514PLXNA31
NM_000337SGCD1
NM_005526HSF11
XM_001127807LOC6422551
XM_001126718LOC6422551
NM_016639TNFRSF12A1
NM_024512LRRC21
NM_015225KIAA03671
NM_030642APOL51
NM_0010937251
NM_000302PLOD11
NM_020939CPNE51
NM_001543NDST11
XM_925864LOC6423251
NM_002086GRB21
NM_203506GRB21
NM_198490RAB431
NM_012218ILF31
NM_007353GNA121
XM_001125753MUC3B1
NM_152680TMEM1541
NM_000527LDLR1
NM_012231PRDM21
NM_014712SETD1A1
NM_0010987211
NM_0010987221
NM_004485GNG41
NM_016823CRK1
NM_005206CRK1
NM_005137DGCR21
NM_004738VAPB1
NM_005829AP3S21
NM_004588SCN2B1
NM_032996CASP91
NM_001229CASP91
NM_152900MAGI31
NM_153451ORAOV11
NM_003822NR5A21
NM_205860NR5A21
NM_138411LOC1127031
NM_198846SIGLEC61
NM_138499PWWP21
NM_000523HOXD131
NM_005357LIPE1
NM_032552DAB2IP1
NM_018715RCC21
NM_001029880SFMBT21
NM_005094SLC27A41
NM_005740DNAL41
NM_001830CLCN41
NM_152499CCDC241
NM_023928AACS1
NM_004273CHST31
XM_379694LOC4015771
XM_942510LOC6528271
XM_928150LOC4015771
NM_012072CD931
NM_199289NEK51
NM_017740ZDHHC71
NM_024877CNTD21
NM_007011ABHD21
NM_152924ABHD21
NM_003650CST71
NM_005255GAK1
NM_005220DLX31
NM_174917LOC1973221
NM_004822NTN11
XM_376305DUB31
XM_001132934LOC7314521
NM_003122SPINK11
NM_173527REM21
NM_194255SLC19A11
NM_032536NTNG21
NM_152787MAP3K7IP31
NM_006092NOD11
NM_032656DHX371
NM_014231VAMP11
NM_016830VAMP11
NM_199245VAMP11
NM_0153721
XM_373497LOC3877631
XM_941665LOC3877631
NM_012098ANGPTL21
NM_024653PRKRIP11
NM_021260ZFYVE11
NM_178441ZFYVE11
NM_001033667LY91
NM_138383ABBA-11
NM_001005914SEMA3B1
NM_004636SEMA3B1
NM_001002251ARL6IP41
NM_016638ARL6IP41
NM_018694ARL6IP41
NM_001002252ARL6IP41
NM_001002027ATP5G11
NM_005175ATP5G11
NM_015584POLDIP21
NM_003983SLC7A61
NM_001076785SLC7A61
NM_005231CTTN1
NM_138565CTTN1
NM_144639UROC11
XM_945887LOC6440901
XM_935946LOC6419121
XM_931994LOC6440901
NM_194272RBPMS21
NM_152307C14orf1721
NM_032367ZBED31
NM_015321CRTC11
NM_0010984821
XM_938853LOC2854841
XM_376303LOC2854841
NM_017921NPLOC41
NM_153645NUP501
NM_007172NUP501
XM_001131161HEATR21
NM_017802HEATR21
NM_001038707CDC42SE11
NM_020239CDC42SE11
XM_001124623LOC7277311
NM_025078PQLC11
NM_032447FBN31
XM_001130790KIAA18811
NM_001080400KIAA18811
NM_024298LENG41
NM_022574PERQ11
NM_000160GCGR1
NM_024791PDZD31
NM_017491WDR11
NM_005112WDR11
NM_013433TNPO21
NM_004571PKNOX11
NM_015644TTLL31
NM_001025930TTLL31
NM_015156RCOR11
NM_006674HCP51
NM_016472C14orf1291
NM_005783TXNDC91
NM_006464TGOLN21
NM_030792GDPD51
NM_005036PPARA1
NM_001001928PPARA1
NM_203464AK3L11
NM_013410AK3L11
NM_001005353AK3L11
XM_001132080LOC7310071
XM_928632LOC6456191
NM_024947PHC31
NM_007249KLF121
NM_152641ARID21
NM_145257C1orf961
NM_175709CBX71
NM_015347RIMBP21
NM_015326SRGAP21
NM_0251531
NM_024656GLT25D11
NM_153051MTMR31
NM_021090MTMR31
NM_153050MTMR31
NM_031372HNRPDL1
NM_024511C4orf151
NM_053056CCND11
NM_018126TMEM331
NM_005990STK101
NM_001029864KIAA17551
NM_000429MAT1A1
NM_001010883FAM102B1
NM_006325RAN1
NM_024677NSUN71
NM_004296RGS61
NM_015141GPD1L1
NM_020467LOC572281
NM_001031628LOC572281
NM_001033873LOC572281
NM_003657BCAS11
NM_025114CEP2901
NM_001081573GAB31
NM_080612GAB31
NM_139177SLC39A111
NM_020717SHROOM41
NM_173687C8orf311
NM_152740HIBADH1
NM_014759PHYHIP1
NM_0010993351
NM_201263WARS21
NM_014977ACIN11
NM_198465NRK1
NM_031231APBA2BP1
NM_031232APBA2BP1
NM_001003937TSPYL61
NM_0011013961
NM_018952HOXB61
NM_020245TULP41
NM_001007466TULP41
XM_001126811LOC7281901
NM_0011112831
NM_000618IGF11
NM_0011112841
NM_0011096891
NM_021061ZNF2501
NM_175767IL6ST1
XM_001131943LOC7299791
XM_001128763LOC7311881
NM_014667VGLL41
NM_139058ARX1
NM_006578GNB51
NM_016194GNB51
NM_144590ANKRD221
NM_001972ELA21
NM_058192RPUSD11
NM_018056TMEM39B1
NM_014700RAB11FIP31
NM_005865PRSS161
NM_014910ZNF5071
NM_005969NAP1L41
NM_182551LYCAT1
NM_001002257LYCAT1
NM_007073BVES1
NM_147147BVES1
XM_210048H2BFM1
XM_936705H2BFM1
NM_001001694FLJ419931
XM_938374LOC6440101
NM_003438ZNF1371
NM_006494ERF1
NM_001024858SPTB1
NM_005065SEL1L1
NM_182557BCL9L1
NM_012300FBXW111
NM_033644FBXW111
NM_033645FBXW111
NM_003250THRA1
NM_017436A4GALT1
NM_016376ANKFY11
NM_017966VPS37C1
NM_181724TMEM1191
NM_002957RXRA1
NM_005892FMNL11
NM_006598SLC12A71
NM_030930UNC93B11
XM_001129638LOC7291961
XM_942210LOC6505621
XM_173132LOC2556201
NM_002990CCL221
NM_001079812DIAPH11
NM_005219DIAPH11
NM_017438SETD41
NM_017590ZC3H7B1
NM_032899FAM83A1
NM_006290TNFAIP31
NM_022438MAL1
NM_022439MAL1
NM_022440MAL1
NM_002371MAL1
NM_003863DPM21
NM_001810CENPB1
NM_181500CUTL11
NM_001913CUTL11
NM_133493CD1091
XM_379078FLJ414811
XM_944401FLJ414811
NM_003099SNX11
NM_152826SNX11
NM_148955SNX11
NM_014701KIAA02561
NM_138961ESAM1
NM_001387DPYSL31
NM_001024843TNRC6B1
NM_015088TNRC6B1
NM_012392PEF11
NM_004279PMPCB1
NM_030810TXNDC51
NM_022085TXNDC51
NM_0011128001
NM_021097SLC8A11
NM_0011128011
NM_0011128021
NM_0010997841
NM_001004312RTP21
NM_199050C21orf251
NM_015500C21orf251
XM_032945C21orf251
NM_020666CLK41
NM_012398PIP5K1C1
NM_006338LRRN21
NM_201630LRRN21
NM_144707PROM21
NM_173473C10orf1041
NM_012153EHF1
NM_001047605KIR3DX11
NM_133370YTHDC11
NM_001031732YTHDC11
NM_033109PNPT11
NM_001040455SIDT21
XM_498986LOC4410521
XM_944238LOC4410521
NM_003241TGM41
NM_016487C6orf2031
NM_001001666TMEM16G1
XM_001132608LOC7313171
XM_001133094LOC7291211
NM_152997C4orf71
NM_052907TMEM132B1
NM_003918GYG21
NM_001079855GYG21
NM_005558LAD11
NM_002397MEF2C1
NM_003957BRSK21
NM_004145MYO9B1
NM_006581FUT91
XM_375443LOC2841001
NM_024076KCTD151
NM_000721CACNA1E1
NM_002984CCL41
NM_207007CCL4L21
NM_001001435CCL4L11
XM_001133190LOC7288351
XM_001133183LOC7288351
XM_001125732LOC7304241
XM_001125707LOC7304241
XM_001125761LOC7304241
XM_001133187LOC7288351
NM_052928SMYD41
NM_001040458ARTS-11
NM_016577RAB6B1
XM_379543LOC4014421
NM_176816CCDC1251
NM_024771NAT111
XM_001133002LOC7288041
NM_018023YEATS21
NM_0152971
NM_001410MEGF81
NM_012069ATP1B41
NM_001010898SLC6A171
NM_020750XPO51
NM_015101GLT25D21
NM_002342LTBR1
NM_178469LCN81
NM_000663ABAT1
NM_020686ABAT1
XM_001128475LOC2851911
NM_006519DYNLT11
NM_020433JPH21
NM_001042633SNX211
NM_001042632SNX211
NM_001080506FLJ129931
XM_001128552FLJ129931
NM_182970RIMS41
NM_005940MMP111
NM_004525LRP21
NM_138814PNPLA51
NM_023112OTUB21
NM_020360PLSCR31
NM_003382VIPR21
NM_022757CCDC141
NM_003749IRS21
NM_203327SLC23A21
NM_005116SLC23A21
NM_022758C6orf1061
NM_024294C6orf1061
NM_001042371LOC2838711
NM_006013RPL101
NM_001177ARL11
NM_024602HECTD31
NM_020993BCL7A1
NM_001024808BCL7A1
XM_001130382LOC7308551
XM_001134429MUC5AC1
NM_080877SLC34A31
NM_153268PLCXD21
NM_003451ZNF1771
NM_033543CEACAM211
NM_0010985061
NM_032784RSPO31
NM_000877IL1R11
XM_001131779LOC7309191
NM_000872HTR71
NM_019859HTR71
NM_019860HTR71
NM_005490SH2D3A1
NM_207111TRIAD31
NM_207116TRIAD31
NM_024910ZNF7671
NM_0153511
NM_003023SH3BP21
NM_006056NMUR11
NM_0011049251
NM_018257PCMTD21
NM_001001712LCN101
NM_152414BHLHB51
NM_001042669ARHGAP241
NM_001025616ARHGAP241
NM_031305ARHGAP241
NM_020132AGPAT31
NM_001037553AGPAT31
NM_138444KCTD121
NM_000380XPA1
NM_182686KIAA0319L1
NM_133638ADAMTS191
NM_177551GPR109A1
XM_001134375GPR109B1
NM_006018GPR109B1
NM_015219EXOC71
NM_001013839EXOC71
NM_0010853821
NM_012435SHC21
NM_005955MTF11
NM_152222TNFRSF19L1
NM_032871TNFRSF19L1
NM_181079IL21R1
NM_021798IL21R1
NM_181078IL21R1
NM_182527CABP71
NM_002695POLR2E1
NM_006869CENTA11
NM_006351TIMM441
NM_001001343MGC271211
NM_007144PCGF21
NM_002248KCNN11
NM_004454ETV51
XM_001134164ETV51
NM_080792SIRPA1
NM_001040023SIRPA1
NM_001040022SIRPA1
NM_198277SLC37A21
NM_005026PIK3CD1
NM_130844WWOX1
NM_032300TCHP1
NM_152375KLHDC7A1
NM_012135FAM50B1
XM_944838LOC2857331
XM_379432LOC2857331
NM_0150161
NM_144996ARL13B1
NM_182896ARL13B1
NM_015666GTPBP51
NM_198334GANAB1
NM_198335GANAB1
NM_001079559HNRPUL21
NM_001031738TMEM1501
NM_153342TMEM1501
NM_002417MKI671
NM_0010996381
NM_0010996391
NM_007145ZNF1461
NM_018019MED91
NM_006965ZNF241
NM_032900ARHGAP191
NM_014762DHCR241
NM_014550CARD101
NM_005877SF3A11
NM_001005409SF3A11
NM_001717BNC11
NM_152624DCP21
NM_018440PAG11
NM_033198PIGS1
NM_006076HRBL1
NM_133330WHSC11
NM_001042424WHSC11
NM_133331WHSC11
NM_133335WHSC11
NM_133448TMEM132D1
NM_031426C9orf581
NM_017991FLJ100811
NM_014325CORO1C1
NM_0133181
NM_001040701FUT61
NM_000150FUT61
NM_001428ENO11
NM_031310PLVAP1
NM_207514FLJ201861
NM_138563KLK151
NM_138564KLK151
NM_017509KLK151
NM_016396CTDSPL21
NM_001017980LOC2035471
NM_021627SENP21
NM_022497MRPS251
NM_005477HCN41
NM_014828TOX41
NM_006734HIVEP21
NM_014080DUOX21
NM_001991EZH11
NM_144625WDR641
NM_020546ADCY21
NM_014904RAB11FIP21
NM_005056JARID1A1
NM_001042603JARID1A1
NM_020661AICDA1
NM_0011097541
NM_002837PTPRB1
NM_001032290PSRC11
NM_001032291PSRC11
NM_032636PSRC11
NM_001005290PSRC11
NM_000781CYP11A11
NM_0010997731
NM_058175COL6A21
NM_017728TMEM1041
NM_001001894TTC31
NM_003316TTC31
NM_031444C22orf131
NM_000738CHRM11
NM_013399C16orf51
NM_009589ARSD1
NM_032328EFCAB21
NM_0010992851
NM_002823PTMA1
XM_941283LOC6432871
XM_945078LOC6432871
XM_928075LOC6432871
XM_932585LOC6432871
NM_001128AP1G11
NM_001030007AP1G11
NM_001005609EDA1
NM_001399EDA1
NM_020815PCDH101
NM_001012755MCART61
NM_015292FAM62A1
NM_001040446MTMR121
NM_006037HDAC41
NM_0010982131
NM_0010982121
NM_000861HRH11
NM_0010982111
NM_030782CLPTM1L1
NM_014376CYFIP21
NM_001037332CYFIP21
NM_001037333CYFIP21
NM_004727SLC24A11
NM_014331SLC7A111
NM_001010980C1orf1301
NM_198183UBE2L61
NM_004223UBE2L61
NM_006108SPON11
NM_001498GCLC1
NM_000268NF21
NM_016418NF21
NM_181832NF21
NM_181828NF21
NM_181829NF21
NM_181833NF21
NM_181830NF21
NM_138468ICA1L1
NM_006899IDH3B1
NM_174856IDH3B1
NM_004337OSGIN21
NM_173854SLC41A11
NM_022492TTC311
NM_183419RNF191
NM_015435RNF191
NM_004188GFI1B1
XM_001131805LOC7320811
XM_001130480LOC7295051
NM_032454STK191
NM_004197STK191
NM_0011055681
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_020789IGSF91
NM_002007FGF41
XM_944606LOC6464821
XM_933644LOC6464821
NM_000958PTGER41
NM_018000MREG1
XM_378462FLJ224471
XM_943476FLJ224471
NM_016412IGF2AS1
NM_001905CTPS1
NM_017849TMEM1271
XM_940069PPP1R3E1
XM_927029PPP1R3E1
NM_004831CRSP71
NM_001776ENTPD11
NM_0010981751
XM_001127515LOC7308631
XM_001127501LOC7284631
NM_052904KLHL321
NM_022162NOD21
NM_006873STON11
NM_006885ATBF11
NM_001259CDK61
NM_002613PDPK11
NM_031268PDPK11
NM_005759ABI21
XM_001126750ABI21
NM_006306SMC1A1
NM_014418TCL61
NM_012468TCL61
NM_021949ATP2B31
NM_001001344ATP2B31
NM_0208831
NM_198124CSMD31
NM_198123CSMD31
NM_052900CSMD31
NM_138554TLR41
NM_004873BAG51
NM_001015049BAG51
NM_001015048BAG51
NM_020777SORCS21
NM_003713PPAP2B1
NM_177414PPAP2B1
NM_022469GREM21
NM_003352SUMO11
NM_001005782SUMO11
NM_153442GPR261
NM_006166NFYB1

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317