Automatic recommendation
Not OK - siRNA is not specific
103 hits were found for CCCUUUCUUUGCUGUUUCU (34 guide strand hits and 69 sense strand hits.)
Hits to Guide strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
NM_002473 | MYH9 | 6515 | 6533 | u | C | C | U | U | U | C | U | U | U | G | C | U | G | U | U | U | g | c | 90 | 3 | 16 | ac | false | <90% | 7474 | ||
NM_006134 | TMEM50B | 2211 | 2229 | u | u | C | U | U | U | C | U | U | U | G | C | U | G | U | U | U | u | U | 83 | 3 | 15 | ac | false | <90% | 2350 | ||
XM_041126 | KIAA1486 | 2557 | 2575 | a | a | C | U | U | U | C | U | U | U | G | C | U | G | U | U | U | g | U | 83 | 3 | 15 | ac | false | <90% | 4828 | ||
NM_203294 | TRIM7 | 282 | 300 | C | C | C | U | U | U | C | U | U | U | G | C | U | a | U | U | U | u | c | 72 | 3 | 13 | c | false | <90% | 2592 | ||
NM_203295 | TRIM7 | 282 | 300 | C | C | C | U | U | U | C | U | U | U | G | C | U | a | U | U | U | u | c | 72 | 3 | 13 | c | false | <90% | 2660 | ||
NM_203296 | TRIM7 | 282 | 300 | C | C | C | U | U | U | C | U | U | U | G | C | U | a | U | U | U | u | c | 72 | 3 | 13 | c | false | <90% | 2869 | ||
NM_033180 | OR51B2 | 136 | 154 | C | C | C | c | U | U | C | U | U | U | G | C | U | G | U | U | U | a | U | 60 | 2 | 13 | c | false | <90% | 1055 | ||
NM_024028 | PCYOX1L | 2434 | 2452 | g | C | u | U | U | U | C | U | U | U | G | C | U | u | U | U | U | C | U | 58 | 3 | 10 | c | false | <90% | 2506 | ||
NR_003370 | LOC730092 | 20662 | 20680 | u | C | C | U | U | U | C | U | U | U | G | C | U | u | U | U | c | C | U | 54 | 3 | 12 | c | false | <90% | 26557 | ||
NM_020452 | ATP8B2 | 2707 | 2725 | a | a | g | U | U | U | C | U | U | U | G | C | U | a | U | U | U | C | U | 47 | 4 | 10 | c | false | <90% | 5871 | ||
NM_003179 | SYP | 1066 | 1084 | C | C | C | U | g | U | C | U | U | U | G | C | U | G | U | U | U | a | U | 45 | 2 | 12 | c | false | <90% | 2449 | ||
NM_178134 | CYP4Z1 | 1679 | 1697 | u | a | a | U | U | U | C | U | U | U | G | C | U | G | U | a | U | C | U | 40 | 4 | 12 | c | false | <90% | 1907 | ||
XM_001133951 | CYP4Z1 | 1691 | 1709 | u | a | a | U | U | U | C | U | U | U | G | C | U | G | U | a | U | C | U | 40 | 4 | 12 | c | false | <90% | 1918 | ||
XM_001129482 | STARD9 | 13932 | 13950 | a | C | C | U | U | U | C | U | U | U | c | C | U | G | U | U | U | C | U | 36 | 2 | 9 | c | false | <90% | 15083 | ||
XM_001129290 | STARD9 | 13932 | 13950 | a | C | C | U | U | U | C | U | U | U | c | C | U | G | U | U | U | C | U | 36 | 2 | 9 | c | false | <90% | 15083 | ||
NM_012333 | MYCBP | 1030 | 1048 | g | C | C | U | U | U | C | U | g | U | G | C | U | G | U | U | U | u | U | 35 | 3 | 8 | c | false | <90% | 2093 | ||
NM_001077441 | BCLAF1 | 5153 | 5171 | a | C | C | U | U | U | C | U | U | U | a | C | U | G | U | U | U | u | U | 34 | 3 | 9 | c | false | <90% | 6758 | ||
NM_001077440 | BCLAF1 | 5519 | 5537 | a | C | C | U | U | U | C | U | U | U | a | C | U | G | U | U | U | u | U | 34 | 3 | 9 | c | false | <90% | 7124 | ||
NM_014739 | BCLAF1 | 5672 | 5690 | a | C | C | U | U | U | C | U | U | U | a | C | U | G | U | U | U | u | U | 34 | 3 | 9 | c | false | <90% | 7277 | ||
NM_004507 | HUS1 | 1792 | 1810 | a | u | a | U | U | U | C | U | U | U | G | a | U | G | U | U | U | C | U | 33 | 4 | 8 | false | <90% | 2143 | |||
NM_015161 | ARL6IP1 | 221 | 239 | u | g | g | U | U | U | C | U | U | U | G | g | U | G | U | U | U | C | U | 33 | 4 | 8 | false | <90% | 2280 | |||
NM_001040273 | TYSND1 | 2656 | 2674 | C | C | C | U | U | U | C | U | g | U | G | C | U | G | U | U | U | u | c | 32 | 3 | 8 | c | false | <90% | 3485 | ||
NM_173555 | TYSND1 | 2973 | 2991 | C | C | C | U | U | U | C | U | g | U | G | C | U | G | U | U | U | u | c | 32 | 3 | 8 | c | false | <90% | 3802 | ||
NM_006775 | QKI | 4600 | 4618 | u | u | g | g | U | U | C | U | U | U | G | C | U | G | U | U | U | C | U | 30 | 4 | 15 | bc | false | <90% | 4731 | ||
NM_006252 | PRKAA2 | 2042 | 2060 | u | C | C | U | U | g | C | U | U | U | G | C | U | G | U | U | U | g | g | 27 | 4 | 11 | c | false | <90% | 2435 | ||
NM_032435 | KIAA1804 | 3760 | 3778 | u | C | C | U | U | U | C | U | U | U | c | C | U | u | U | U | U | C | U | 17 | 3 | 9 | c | false | <90% | 4667 | ||
NM_001017369 | SC4MOL | 567 | 585 | C | C | C | U | U | U | C | U | a | U | G | C | U | G | g | U | U | C | U | 15 | 2 | 8 | c | false | <90% | 1928 | ||
NM_006745 | SC4MOL | 853 | 871 | C | C | C | U | U | U | C | U | a | U | G | C | U | G | g | U | U | C | U | 15 | 2 | 8 | c | false | <90% | 2214 | ||
NM_206595 | ESRRG | 1986 | 2004 | C | C | C | U | U | U | C | U | U | U | c | C | U | u | U | U | U | C | c | 14 | 3 | 10 | c | false | <90% | 5251 | ||
NM_001438 | ESRRG | 1988 | 2006 | C | C | C | U | U | U | C | U | U | U | c | C | U | u | U | U | U | C | c | 14 | 3 | 10 | c | false | <90% | 5253 | ||
NM_206594 | ESRRG | 2104 | 2122 | C | C | C | U | U | U | C | U | U | U | c | C | U | u | U | U | U | C | c | 14 | 3 | 10 | c | false | <90% | 5369 | ||
NM_005856 | RAMP3 | 831 | 849 | a | g | g | U | U | U | C | U | a | U | G | C | U | G | U | U | U | C | U | 6 | 4 | 10 | bc | false | <90% | 1376 | ||
XM_941993 | LOC652517 | 1554 | 1572 | C | C | C | U | U | U | C | U | U | g | G | C | U | G | U | c | U | C | U | -8 | 2 | 9 | c | false | <90% | 1923 | ||
NM_153700 | STRC | 2496 | 2514 | C | C | C | U | U | U | C | U | U | g | G | C | U | G | U | c | U | C | U | -8 | 2 | 9 | c | false | <90% | 5515 |
Hits to Sense strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
NM_004241 | JMJD1C | 1669 | 1687 | g | G | A | A | A | C | A | G | C | A | A | A | a | A | A | A | G | a | u | 79 | 4 | 11 | false | <90% | 8415 | |||
NM_032776 | JMJD1C | 1962 | 1980 | g | G | A | A | A | C | A | G | C | A | A | A | a | A | A | A | G | a | u | 79 | 4 | 11 | false | <90% | 8762 | |||
NM_001007546 | FLJ46838 | 819 | 837 | u | c | A | A | A | C | A | G | C | A | A | A | a | A | A | A | G | G | a | 71 | 4 | 10 | false | <90% | 2243 | |||
NM_153210 | USP43 | 2929 | 2947 | g | G | A | A | A | C | A | G | C | A | A | A | G | A | c | A | G | u | c | 65 | 4 | 13 | c | false | <90% | 3375 | ||
NM_052990 | IFT122 | 1850 | 1868 | u | G | A | A | A | C | A | G | C | A | A | A | G | A | A | g | G | c | c | 64 | 4 | 14 | c | false | <90% | 3717 | ||
NM_018262 | IFT122 | 2006 | 2024 | u | G | A | A | A | C | A | G | C | A | A | A | G | A | A | g | G | c | c | 64 | 4 | 14 | c | false | <90% | 3837 | ||
NM_052989 | IFT122 | 2183 | 2201 | u | G | A | A | A | C | A | G | C | A | A | A | G | A | A | g | G | c | c | 64 | 4 | 14 | c | false | <90% | 4029 | ||
NM_052985 | IFT122 | 2336 | 2354 | u | G | A | A | A | C | A | G | C | A | A | A | G | A | A | g | G | c | c | 64 | 4 | 14 | c | false | <90% | 4182 | ||
NM_022553 | VPS52 | 1185 | 1203 | A | G | A | u | A | C | A | G | C | A | A | A | G | A | A | A | G | G | a | 58 | 2 | 14 | bc | false | <90% | 2990 | ||
NM_002237 | KCNG1 | 1904 | 1922 | A | G | A | A | A | C | A | G | C | A | A | A | a | A | A | A | x | x | x | 58 | 4 | 12 | false | <90% | 1931 | |||
NM_178586 | PPP2R5C | 4022 | 4040 | A | G | A | A | A | C | A | G | C | A | A | A | a | A | A | A | a | a | a | 58 | 4 | 12 | false | <90% | 4050 | |||
NM_002719 | PPP2R5C | 4139 | 4157 | A | G | A | A | A | C | A | G | C | A | A | A | a | A | A | A | a | a | a | 58 | 4 | 12 | false | <90% | 4167 | |||
NM_153615 | Rgr | 245 | 263 | A | G | A | c | A | C | A | G | C | A | A | A | c | A | A | A | G | G | G | 52 | 2 | 8 | false | <90% | 2897 | |||
NM_003299 | HSP90B1 | 2473 | 2491 | A | G | A | A | A | C | A | G | C | A | A | A | G | g | A | A | u | c | u | 49 | 4 | 13 | c | false | <90% | 2780 | ||
NM_007229 | PACSIN2 | 663 | 681 | A | G | A | A | g | C | A | G | C | A | A | A | G | A | A | A | G | c | c | 40 | 3 | 12 | c | false | <90% | 3255 | ||
NM_012406 | PRDM4 | 2184 | 2202 | A | G | u | c | A | C | A | G | C | A | A | A | G | A | A | A | G | G | a | 38 | 3 | 14 | bc | false | <90% | 4225 | ||
XM_378517 | MGC15885 | 1171 | 1189 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | a | G | 35 | 2 | 9 | c | false | <90% | 2698 | ||
XM_944564 | MGC15885 | 1171 | 1189 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | a | G | 35 | 2 | 9 | c | false | <90% | 2698 | ||
NM_032142 | CEP192 | 3881 | 3899 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | G | a | c | 32 | 3 | 8 | c | false | <90% | 7289 | ||
XM_001131778 | KIAA0368 | 2145 | 2163 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | G | u | a | 32 | 3 | 8 | c | false | <90% | 7391 | ||
NM_001080398 | KIAA0368 | 2145 | 2163 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | G | u | a | 32 | 3 | 8 | c | false | <90% | 7391 | ||
NM_172226 | CAMKK2 | 3995 | 4013 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 30 | 3 | 9 | c | false | <90% | 4873 | ||
NM_153500 | CAMKK2 | 4570 | 4588 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 30 | 3 | 9 | c | false | <90% | 5448 | ||
NM_172216 | CAMKK2 | 4613 | 4631 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 30 | 3 | 9 | c | false | <90% | 5491 | ||
NM_153499 | CAMKK2 | 4699 | 4717 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 30 | 3 | 9 | c | false | <90% | 5577 | ||
NM_006549 | CAMKK2 | 4742 | 4760 | A | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 30 | 3 | 9 | c | false | <90% | 5620 | ||
XR_016840 | LOC644996 | 380 | 398 | c | a | g | c | A | C | A | G | C | A | A | A | G | A | A | A | G | G | G | 30 | 4 | 15 | bc | false | <90% | 403 | ||
XR_019151 | LOC651599 | 380 | 398 | c | a | g | c | A | C | A | G | C | A | A | A | G | A | A | A | G | G | G | 30 | 4 | 15 | bc | false | <90% | 403 | ||
XM_926112 | LOC441155 | 1311 | 1329 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4494 | ||
XM_936434 | LOC441155 | 1311 | 1329 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4495 | ||
XM_930997 | LOC441155 | 1543 | 1561 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4726 | ||
XM_942819 | LOC441155 | 1543 | 1561 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4727 | ||
XM_496814 | LOC441155 | 1773 | 1791 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4956 | ||
XM_942821 | LOC441155 | 1773 | 1791 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 4957 | ||
XM_931006 | LOC441155 | 2014 | 2032 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 5197 | ||
XM_942815 | LOC441155 | 2014 | 2032 | c | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | c | u | 28 | 4 | 9 | c | false | <90% | 5198 | ||
NM_033044 | MACF1 | 1910 | 1928 | u | G | A | A | A | C | A | c | C | A | A | A | G | A | A | A | G | a | a | 28 | 4 | 9 | c | false | <90% | 19271 | ||
NM_001018160 | APPBP1 | 1014 | 1032 | u | G | A | A | A | a | A | G | C | A | A | A | G | A | A | A | G | a | u | 27 | 4 | 11 | c | false | <90% | 1716 | ||
NM_003905 | APPBP1 | 1118 | 1136 | u | G | A | A | A | a | A | G | C | A | A | A | G | A | A | A | G | a | u | 27 | 4 | 11 | c | false | <90% | 1820 | ||
NM_001018159 | APPBP1 | 1216 | 1234 | u | G | A | A | A | a | A | G | C | A | A | A | G | A | A | A | G | a | u | 27 | 4 | 11 | c | false | <90% | 1918 | ||
XM_938910 | SH3MD4 | 2886 | 2904 | g | G | A | A | A | C | u | G | C | A | A | A | G | A | A | A | G | c | a | 24 | 4 | 10 | c | false | <90% | 5614 | ||
NM_015531 | DKFZP586P0123 | 2303 | 2321 | g | G | A | A | A | C | u | G | C | A | A | A | G | A | A | A | G | c | a | 24 | 4 | 10 | c | false | <90% | 6036 | ||
NM_016195 | MPHOSPH1 | 2485 | 2503 | A | c | c | A | c | C | A | G | C | A | A | A | G | A | A | A | G | G | G | 17 | 3 | 14 | bc | false | <90% | 6319 | ||
NM_153687 | IKIP | 981 | 999 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | u | G | 13 | 3 | 8 | c | false | <90% | 2935 | ||
NM_001017402 | LAMB3 | 275 | 293 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | a | G | 13 | 3 | 8 | c | false | <90% | 4339 | ||
XM_001130197 | FLJ30851 | 523 | 541 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 913 | ||
XM_001127401 | FLJ30851 | 523 | 541 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 913 | ||
XM_001130185 | FLJ30851 | 735 | 753 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 1125 | ||
XM_001130207 | FLJ30851 | 523 | 541 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 1783 | ||
XM_001127419 | FLJ30851 | 523 | 541 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 1783 | ||
NM_001040710 | FLJ30851 | 514 | 532 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | G | a | 11 | 3 | 8 | c | false | <90% | 1889 | ||
NM_014474 | SMPDL3B | 1776 | 1794 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | u | G | a | 11 | 3 | 8 | c | false | <90% | 1890 | ||
NM_001077261 | NCOR2 | 2017 | 2035 | g | G | A | A | A | C | A | G | C | c | A | A | G | A | A | A | G | G | u | 10 | 3 | 8 | bc | false | <90% | 8550 | ||
NM_006312 | NCOR2 | 2017 | 2035 | g | G | A | A | A | C | A | G | C | c | A | A | G | A | A | A | G | G | u | 10 | 3 | 8 | bc | false | <90% | 8826 | ||
NM_015057 | MYCBP2 | 1194 | 1212 | A | G | A | A | A | C | A | G | a | A | A | A | G | A | A | A | a | a | a | 8 | 4 | 8 | c | false | <90% | 14735 | ||
XR_017048 | LOC645939 | 1198 | 1216 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 2256 | ||
XR_018986 | LOC645939 | 1198 | 1216 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 2256 | ||
XR_016763 | LOC399774 | 1247 | 1265 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 2281 | ||
XR_018540 | LOC399774 | 1247 | 1265 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 2281 | ||
NM_004705 | PRKRIR | 1232 | 1250 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 3202 | ||
XR_016912 | LOC644363 | 1343 | 1361 | c | a | g | A | A | C | A | G | u | A | A | A | G | A | A | A | G | G | G | 6 | 4 | 10 | bc | false | <90% | 3306 | ||
NR_002723 | GABPAP | 107902 | 107920 | A | G | A | A | A | u | A | G | C | A | A | A | G | A | A | A | u | a | u | 5 | 4 | 10 | c | false | <90% | 194142 | ||
NM_001369 | DNAH5 | 7018 | 7036 | A | u | u | A | A | g | A | G | C | A | A | A | G | A | A | A | G | G | G | 5 | 3 | 13 | bc | false | <90% | 13971 | ||
NM_000877 | IL1R1 | 1755 | 1773 | A | G | A | A | A | C | u | G | C | A | A | A | G | A | g | A | G | G | c | 4 | 3 | 7 | c | false | <90% | 4909 | ||
NM_005840 | SPRY3 | 7060 | 7078 | A | G | A | A | A | C | u | G | C | A | A | g | G | A | A | A | G | G | G | 0 | 2 | 7 | false | <90% | 9038 | |||
NM_002055 | GFAP | 2408 | 2426 | u | G | A | A | A | C | A | G | g | A | g | A | G | A | A | A | G | G | G | -23 | 3 | 8 | c | false | <90% | 3035 | ||
NM_033425 | DIXDC1 | 1503 | 1521 | A | G | A | A | A | C | A | a | g | A | A | A | G | A | A | A | G | G | u | -27 | 3 | 9 | bc | false | <90% | 5432 | ||
NM_001037954 | DIXDC1 | 1970 | 1988 | A | G | A | A | A | C | A | a | g | A | A | A | G | A | A | A | G | G | u | -27 | 3 | 9 | bc | false | <90% | 5899 | ||
NM_016649 | ESF1 | 1878 | 1896 | A | G | A | A | A | a | A | G | a | A | A | A | G | A | A | A | G | G | c | -28 | 3 | 9 | bc | false | <90% | 3216 |
3 prime UTR Seed matches
Hits to same gene : 0
Hits to other genes : 3363
View matched accessions
3 prime seed match details
Immunostimulatory motif search results
UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).
GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).
Settings used for search
Scores were calculated using scoring scheme SS1
Using AVG scoring mode.
Hit scores
Parameter | Spec. Score cut-off | Colour | Comment |
Hit to same gene | Colour | Hits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit. | |
High scoring hit | ≥80 | Colour | Hits are very likely to cause an off-target effect |
Medium scoring hit | <80¸≥40 | Colour | Hits with a small chance of causing an off target effect. |
Low scoring hit | Colour | Hits very unlikely to cause an off-target effect |
The mismatches are colour coded based on the weighting of that position.
Cut-off | Colour |
Match | Colour |
Wobble base pairs (G-U) | Colour |
Critical bases (none) | Colour |
0.6 bits | Colour |
0.4 bits | Colour |
0.2 bits | Colour |
SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).
Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer