Predicted Off-targets for siRNA "gcuaacaaagaaggcaucg" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
Not OK - siRNA is not specific

17 hits were found for GCUAACAAAGAAGGCAUCG (9 guide strand hits and 8 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_144982 CCDC131 3549 3567 GCUAACAAAGAAuGCAUaa81 3 12   false   <90%   7158
NM_145286 STOML3 1858 1876 caaAACAAAGAAGGCAUaG64 4 14 c false   <90%   1954
NM_207315 LOC129607 2040 2058 aCUuACAAAGAAGGCAUuG58 3 13 c false   <90%   3009
NM_001033087 C20orf133 3844 3862 GaUuACAAAGAAGGCAUCc46 3 14 bc false   <90%   4425
NM_080676 C20orf133 4282 4300 GaUuACAAAGAAGGCAUCc46 3 14 bc false   <90%   4863
NM_025135 FHOD3 3128 3146 uuaAACAAAGAAGGaAUCG42 4 11 c false   <90%   4942
NM_182496 CCDC38 1024 1042 agUAACAAgGAAGGCAUCc21 4 9 bc false   <90%   1953
NM_006731 FCMD 4477 4495 cuUAACAgAGAAGGCAUCc19 4 10 bc false   <90%   7364
NM_001079802 FCMD 4569 4587 cuUAACAgAGAAGGCAUCc19 4 10 bc false   <90%   7456


Hits to Sense strand









AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_004827 ABCG2 2002 2020 aGAUGCCUUCUUcGUUAug79 4 11   false   <90%   4445
NM_001004342 TRIM67 7408 7426 CucUGCCUUCUUUGUUAcC66 3 14 c false   <90%   8522
NM_014807 TMEM24 3132 3150 uGAUGCCUUCUcUGUgAGC38 3 10   false   <90%   3370
NM_152756 RICTOR 5551 5569 aGAUGCCUUgUUUGUUAaC12 3 8 c false   <90%   9535
NM_001408 CELSR2 724 742 gGAUGCCcUCUUUGaUAGC11 3 6 c false   <90%   10531
NM_153647 SLC24A4 325 343 CGAUGaCUUCUUUGUUccg5 4 10 c false   <90%   4428
NM_153648 SLC24A4 277 295 CGAUGaCUUCUUUGUUccg5 4 10 c false   <90%   4437
NM_153646 SLC24A4 325 343 CGAUGaCUUCUUUGUUccg5 4 10 c false   <90%   4485


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1238
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_006581FUT95
NM_198196CD963
NM_005816CD963
NM_207333ZNF3203
NM_153051MTMR33
NM_021090MTMR33
NM_153050MTMR33
NM_002158FOXN23
NM_144664FAM76B3
NM_014730KIAA01522
NM_133647SLC12A62
NM_001042495SLC12A62
NM_001042494SLC12A62
NM_001042497SLC12A62
NM_005135SLC12A62
NM_001042496SLC12A62
NM_177538CYP20A12
NM_006981NR4A32
NM_173198NR4A32
NM_173200NR4A32
NM_020240CDC42SE22
NM_001038702CDC42SE22
NM_170768ZFP912
NM_014155ZBTB442
NM_130391PTPRD2
NM_130393PTPRD2
NM_130392PTPRD2
NM_002839PTPRD2
NM_001040712PTPRD2
NM_013943CLIC42
XM_378661C17orf512
XM_944416C17orf512
NM_182612PDDC12
NM_001167BIRC42
NM_018085IPO92
NM_152730C6orf1702
NM_0011112832
NM_000618IGF12
NM_0011112842
NM_004513IL162
NM_172217IL162
NM_017987RUFY22
NM_012424RPS6KC12
NM_020552TCL62
NM_020553TCL62
NM_152774MGC420902
NM_213566DFFA2
NM_004401DFFA2
NM_001003800BICD22
NM_012338TSPAN122
NM_0010992252
NM_144609CCDC432
NM_007211RASSF82
NM_014810CEP3502
NM_015458MTMR92
NM_005158ABL22
NM_007314ABL22
NM_0011001082
NM_005440RND22
NM_001083625ANKRD122
NM_015208ANKRD122
NM_012214MGAT4A2
XM_934287LOC1448172
XM_945225LOC1448172
NM_0010996942
NM_199229RPE2
NM_024295DERL12
NM_0010992702
NM_145005C9orf722
NM_001693ATP6V1B22
NM_145010C10orf632
NM_014397NEK62
NM_020873LRRN12
NM_0333902
NM_005502ABCA12
NM_007038ADAMTS52
NM_022483C5orf282
NM_001271CHD21
NM_015864C6orf321
NM_005042PRH21
NM_004898CLOCK1
NM_014959CARD81
NM_182485CPEB21
NM_182646CPEB21
XM_941733LOC6471151
XM_930136LOC6471151
NM_019596C21orf621
NM_130782RGS181
NM_0209101
NM_006823PKIA1
NM_181839PKIA1
XM_001134421C1orf1521
NM_0011001591
NM_002713PPP1R81
NM_014110PPP1R81
NM_138558PPP1R81
NM_198445FLJ459091
XM_937430LOC6483771
XM_929253LOC6463161
NM_017489TERF11
NM_003218TERF11
NM_017633FAM46A1
NM_003483HMGA21
NM_016124RHD1
NM_138731MIPOL11
NM_004172SLC1A31
NM_004724ZW101
NM_152665TCTEX1D11
NM_0330261
NM_005429VEGFC1
NM_014098PRDX31
NM_006793PRDX31
NM_057175NARG11
NM_033018PCTK11
NM_006201PCTK11
NM_017902HIF1AN1
NM_207012AP3M11
NM_012095AP3M11
NM_033514LIMS31
NM_032856WDR731
NM_007249KLF121
NM_002644PIGR1
NM_006108SPON11
NM_024015HOXB41
NM_018847KLHL91
NM_014805EPM2AIP11
NM_015163TRIM91
NM_002581PAPPA1
NM_003337UBE2B1
NM_032230C12orf261
NM_002466MYBL21
NM_178539FAM19A21
NM_005398PPP1R3C1
NM_003918GYG21
NM_001079855GYG21
NM_018299UBE2W1
NM_001001481UBE2W1
NM_002119HLA-DOA1
NM_002310LIFR1
NM_002737PRKCA1
NM_001017980LOC2035471
NM_178863KCTD131
NM_024590ARSJ1
NM_015704D15Wsu75e1
NM_153184CADM21
NM_006577B3GNT21
NM_198267ING31
NM_001037331LOC2842741
NM_020957PCDHB161
NM_001918DBT1
XM_938949LOC6437971
XM_927076LOC6437971
NM_003708RDH161
XM_943661LRRC381
XM_059074LRRC381
NM_199282ARHGAP271
NM_153262SYT141
NM_005819STX61
NM_213651SLC25A241
NM_013386SLC25A241
NM_006548IGF2BP21
NM_001007225IGF2BP21
NM_024946NIP301
NM_021960MCL11
NM_182763MCL11
XM_001130020KIAA11471
XM_001130081KIAA11471
NM_001080392KIAA11471
NM_152429FGFBP31
NM_001256CDC271
NM_152835PDIK1L1
NM_007231SLC6A141
NM_000286PEX121
NM_019013FAM64A1
NM_014809KIAA03191
NM_015635GAPVD11
NM_000856GUCY1A31
NM_007085FSTL11
NM_004946DOCK21
NM_030813CLPB1
NM_152437ZNF6641
NM_203463LASS61
NM_012174FBXW81
NM_153348FBXW81
NM_152914MGC338941
NM_031890CECR61
NM_002562P2RX71
NM_020825CRAMP1L1
NM_0156561
NM_015568PPP1R16B1
NM_203373FBXL221
NM_002867RAB3B1
XM_001129158LIMS11
NM_005989AKR1D11
NM_001944DSG31
NM_012431SEMA3E1
NM_000527LDLR1
NM_004093EFNB21
NM_016817OAS21
NM_016200LSM81
NM_001201BMP31
NM_0010853541
NM_024657MORC41
NM_000614CNTF1
NM_001790CDC25C1
NM_022809CDC25C1
NM_134325SLC26A91
NM_052934SLC26A91
NM_144599NIPA11
XM_941731Klkbl41
NM_001080492Klkbl41
NM_182692SRPK21
NM_182691SRPK21
NM_004827ABCG21
NM_152618BBS121
NM_001018111PODXL1
NM_005397PODXL1
NM_001080975REPS21
NM_004726REPS21
NM_178552C22orf331
XM_001132360LOC7322481
NM_183041DTNBP11
NM_032122DTNBP11
NM_006055LANCL11
NM_001183ATP6AP11
NM_006868RAB311
NM_015282CLASP11
NM_002242KCNJ131
NM_005028PIP5K2A1
NM_020933ZNF3171
XM_378973LOC2848011
XM_944897LOC2848011
NM_006306SMC1A1
NM_020139BDH21
NM_175069APTX1
NM_175072APTX1
NM_017692APTX1
NM_175073APTX1
NM_175071APTX1
NM_0011031701
NM_0011031691
NM_1829691
NM_153338GGT61
NM_133478SLC4A51
NM_018287ARHGAP121
NM_004177STX31
NM_001690ATP6V1A1
NM_006566CD2261
NM_002393MDM41
NM_001009554MFAP3L1
NM_021647MFAP3L1
NM_017813IMPAD11
NM_006287TFPI1
NM_001080125CASP81
NM_001080124CASP81
NM_033355CASP81
NM_001228CASP81
NM_033356CASP81
NM_080927DCBLD21
NM_001008493ENAH1
NM_018212ENAH1
NM_178509STXBP41
NM_000378WT11
NM_024424WT11
NM_024425WT11
NM_024426WT11
NM_017769KIAA13331
NM_018298MCOLN31
NM_002480PPP1R12A1
NM_001029839C3orf231
NM_001029840C3orf231
NM_020347LZTFL11
NM_015336ZDHHC171
NM_017435SLCO1C11
NM_000235LIPA1
NM_018058CRTAC11
NM_152564VPS13B1
NM_017890VPS13B1
NM_002670PLS11
NM_020963MOV101
NM_015633FGFR1OP21
NM_015032APRIN1
NM_005877SF3A11
NM_001005409SF3A11
NM_001618PARP11
NM_024080TRPM81
NM_032918RERG1
NM_017821RHBDL21
NM_020420DAZ41
NM_001005375DAZ41
NM_004081DAZ11
NM_020364DAZ31
NM_020363DAZ21
NM_001005785DAZ21
NM_001005786DAZ21
NM_002940ABCE11
NM_001040876ABCE11
NM_017761PNRC21
NM_001148ANK21
NM_020977ANK21
NM_015231NUP1601
XM_001126151LOC7278581
XM_001130844LOC7287641
NM_006060IKZF11
XM_001129399LOC6423461
XM_928707LOC6423461
XM_925879LOC6423461
XM_925864LOC6423251
NM_017554PARP141
NM_018280C22orf261
NM_0010985261
NM_153206AMICA11
NM_001040214TCBA11
NM_000870HTR41
NM_001040172HTR41
NM_001040173HTR41
NM_001013649LOC3889691
NM_001006114C21orf571
XM_929714LOC6467621
XM_935722LOC6467621
XM_938418LOC6467621
NM_032622LNX11
NM_178135HSD17B131
NM_031296RAB33B1
NM_003648DGKD1
NM_152879DGKD1
NM_004687MTMR41
NM_001080416MYBL11
NM_003014SFRP41
NM_004411DYNC1I11
NM_183236RAB27A1
NM_004580RAB27A1
NM_183234RAB27A1
NM_183235RAB27A1
NM_0010109061
NM_022470ZMAT31
NM_152240ZMAT31
NM_015434INTS71
NM_019079L1TD11
NM_004363CEACAM51
NM_015666GTPBP51
NM_024963FBXL181
NM_145343APOL11
NM_003661APOL11
NM_015431TRIM581
NM_145207SPATA51
NM_173687C8orf311
NM_015621CCDC691
NM_002486NCBP11
NM_0011026511
NM_153369KIAA19191
NM_032788ZNF5141
NM_020375C12orf51
NM_001031683IFIT31
NM_001549IFIT31
NM_022340ZFYVE201
NM_000809GABRA41
NM_0011055291
NM_006095ATP8A11
NM_012288TRAM21
NM_144498OSBPL21
NM_014835OSBPL21
NM_004055CAPN51
NM_031939MRO1
NM_201647STAMBP1
NM_006463STAMBP1
NM_213622STAMBP1
NM_001876CPT1A1
NM_152649MLKL1
NM_006045ATP9A1
NM_018700TRIM361
NM_021033RAP2A1
NM_005752CLEC3A1
NM_032486DCTN51
NM_014887PFAAP51
NM_020228PRDM101
NM_199438PRDM101
NM_199437PRDM101
NM_199439PRDM101
NM_148571MRPL271
NM_173359EIF4E31
NM_001537HSBP11
NM_178006STARD131
NM_178007STARD131
NM_052851STARD131
NM_014614PSME41
NM_015488PNKD1
NM_022572PNKD1
NM_030664PTER1
NM_001001484PTER1
NM_001375DNASE21
NM_019044CCDC931
NM_020429SMURF11
NM_181349SMURF11
NM_020962NOPE1
NM_001838CCR71
NM_001025603RFX51
NM_000449RFX51
NM_001304CPD1
NM_001038707CDC42SE11
NM_020239CDC42SE11
NM_020766PCDH191
NM_0011052431
NM_003966SEMA5A1
NM_001465FYB1
NM_199335FYB1
NM_019098CNGB31
NM_153442GPR261
NM_181709FAM101A1
NM_147202C9orf251
NM_020851ISLR21
NM_198830ACLY1
NM_001096ACLY1
NM_001013624LOC2011811
NM_016235GPRC5B1
NM_018324OLAH1
NM_001039702OLAH1
NM_144973MGC240391
NM_005047PSMD51
NM_018409LRP2BP1
NM_023930KCTD141
NM_001037339PDE4B1
NM_002600PDE4B1
NM_001037340PDE4B1
NM_001037341PDE4B1
NM_001076778FAM107A1
NM_007177FAM107A1
NM_001003652SMAD21
NM_005901SMAD21
NM_004776B4GALT51
NM_004432ELAVL21
NM_172344KCNG31
NM_133329KCNG31
NM_000983RPL221
NM_0207191
NM_005497GJA71
NM_001080383GJA71
NM_001039780FLJ167931
NM_019067GNL3L1
NM_014238KSR11
NM_012253TKTL11
NM_001031681CTNS1
NM_004937CTNS1
NM_182597FLJ395751
NM_181654CPLX41
NM_015236LPHN31
NM_007195POLI1
NM_001204BMPR21
XM_943899LOC1260751
XM_934606LOC1260751
NM_001080503LOC1260751
XM_943914LOC1260751
XM_934597LOC1260751
XM_938865LOC1260751
NM_023068SIGLEC11
NM_012334MYO101
NM_130783TSPAN181
NM_052916RNF1571
XM_001134379LOC7323501
XM_001128421LOC7280691
XM_001131537LOC7319941
XM_001130930LOC7296571
NM_015346ZFYVE261
NM_002098GUCA1B1
XM_943571LOC6469161
NM_024511C4orf151
NM_153358ZNF7911
NM_005216DDOST1
NM_012402ARFIP21
NM_016261TUBD11
NM_032105PPP1R12B1
NM_002481PPP1R12B1
NM_198276TMEM171
NM_133375DIS3L1
NM_030779KCNH61
XM_001124844LOC7304201
NM_032967PCDH11X1
NM_024874KIAA0319L1
NM_017861PIGX1
NM_021706LAIR11
NM_002287LAIR11
NM_003167SULT2A11
NM_017856GEMIN81
NM_001042479GEMIN81
NM_001042480GEMIN81
NM_017958PLEKHB21
NM_0011006231
NM_015147CEP681
NM_004744LRAT1
XM_001128535LOC7288061
NM_152362TNFAIP8L11
XM_943043LOC6539041
NM_198179GPR1031
NM_024875SYNPO2L1
NM_022103ZNF6671
NM_018141MRPS101
NM_138801GALM1
NM_032160DSEL1
NM_152913TMEM1301
NM_030626LRRC271
NM_005516HLA-E1
NM_005975PTK61
NM_006873STON11
NM_018128TSR11
NM_0010996781
XM_938924LOC6440921
XM_001130314LOC6440921
NM_170740ALDH5A11
NM_001080ALDH5A11
NM_006864LILRB31
NM_001081450LILRB31
NM_031886KCNA71
NM_052928SMYD41
NM_007047BTN3A21
NM_004901ENTPD41
NM_133444ZNF5261
NM_052941GBP41
NM_001042508LOC6534831
NM_016183MRTO41
NM_133456SHROOM11
NM_139276STAT31
NM_003150STAT31
NM_213662STAT31
NM_033109PNPT11
NM_004212SLC28A21
NM_000890KCNJ51
NM_001039717C4orf291
XM_929378LOC6464501
NM_015092SMG11
NM_022098XPNPEP31
NM_145167PIGM1
NM_001632ALPP1
NM_001992F2R1
NM_020717SHROOM41
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_006500MCAM1
NM_0011003891
NM_005707PDCD71
XM_001133565LOC7314401
NM_024607PPP1R3B1
NM_145699APOBEC3A1
XM_925853LOC6530531
XM_375929LOC4008561
XM_379378LOC4012201
NM_032779FLJ143971
NM_144618MGC298911
NM_0208641
NM_022350LRAP1
NM_153608ZNF1141
NM_001076675ZNF6261
NM_020467LOC572281
NM_001031628LOC572281
NM_001033873LOC572281
XM_001128468NSF1
NM_006178NSF1
NM_0011031761
NM_030639BHLHB91
NM_018018SLC38A41
NM_006482DYRK21
NM_003583DYRK21
NM_013256ZNF1801
NM_006916RPE1
NM_001025369VEGFA1
NM_001033756VEGFA1
NM_001025370VEGFA1
NM_001025368VEGFA1
NM_001025366VEGFA1
NM_001025367VEGFA1
NM_003376VEGFA1
NM_012199EIF2C11
NM_016161A4GNT1
NM_024596MCPH11
NM_080282ABCA101
NM_000153GALC1
NM_001364DLG21
NM_016298FBXO401
NM_004491GRLF11
NM_016169SUFU1
NM_001080502OVOS21
NM_025224ZBTB461
NM_002507NGFR1
NM_198471ANKRD471
NM_005188CBL1
NM_014190ADD11
NM_001119ADD11
NM_014189ADD11
NM_176801ADD11
NM_032505KBTBD81
NM_000112SLC26A21
NM_001025357LOC4413761
NM_153026PRICKLE11
NM_023927GRAMD31
NM_000794DRD11
NM_145049UBLCP11
NM_024989PGAP11
NM_004892SEC22B1
NM_173562KCTD201
NM_030625CXXC61
NM_0010087811
XM_936538FAT31
XM_926199FAT31
NM_000693ALDH1A31
NM_015198COBL1
NM_015079TBC1D2B1
NM_0251851
NM_015613LRRC211
NM_013255MKLN11
NM_030762BHLHB31
NM_001077349ZNF6821
NM_033196ZNF6821
NM_001024593ZMYND171
NM_000208INSR1
NM_001079817INSR1
NM_006282STK41
NM_000133F91
NM_001695ATP6V1C11
NM_138473SP11
NM_145698ACBD51
NM_001042473ACBD51
NM_207366FLJ440601
NM_015156RCOR11
NM_015913TXNDC121
NM_0011127361
NM_015224C3orf631
NM_007202AKAP101
NM_005729PPIF1
NM_001006939LRRC181
XM_086001LOC1480031
XM_942526LOC6511021
NM_013268LGALS131
NM_0010988011
NM_152352C18orf191
XM_001131234LOC7303381
XM_001126530LOC7305481
NM_014747RIMS31
NM_033083EAF11
NM_080737SYTL41
NM_181489ZNF4451
NM_020546ADCY21
NM_014309RBM91
NM_001082576RBM91
NM_001082577RBM91
NM_001031695RBM91
NM_001082578RBM91
NM_001082579RBM91
NM_152395NUDT161
NM_018316KLHL261
NM_207361FREM21
NM_004429EFNB11
NM_033135PDGFD1
NM_025208PDGFD1
NM_0011024451
NM_005613RGS41
NM_014381MLH31
NM_001040108MLH31
NM_014421DKK21
NM_032466ASPH1
NM_032468ASPH1
NM_014989RIMS11
XM_944835LOC6486911
NM_014668GREB11
NM_153712TTL1
NM_001037293PALM21
NM_053016PALM21
NM_022757CCDC141
NM_001558IL10RA1
NM_203329CD591
NM_203331CD591
NM_203330CD591
NM_000611CD591
NM_153188TNPO11
NM_002270TNPO11
NM_021945C6orf851
NM_194282LIN541
NM_001003665C1orf951
NM_000742CHRNA21
NM_003390WEE11
NM_001007224GIMAP61
NM_024711GIMAP61
NM_001001436LOC3882721
NM_013960NRG11
NM_017923MARCH11
NM_001046SLC12A21
NM_199355ADAMTS181
NM_006469IVNS1ABP1
NM_021116ADCY11
NM_017957EPN31
NM_031991PTBP11
NM_002819PTBP11
NM_175847PTBP11
NM_031990PTBP11
NM_024095ASB81
NM_004085TIMM8A1
NM_133463AMZ11
NM_001828CLC1
NM_201526ISLR1
NM_005545ISLR1
NM_001033568RHOT11
NM_001033566RHOT11
NM_018307RHOT11
NM_013267GLS21
NM_001024948FNBP1L1
NM_017737FNBP1L1
NM_138569C6orf1421
NM_004171SLC1A21
NM_012306FAIM21
XM_001132136LOC7286651
XM_001133293LOC7312961
NM_015257KIAA02861
NM_020944GBA21
NM_173499SPATA81
NM_032412C5orf321
NM_003269NR2E11
XM_926142LOC6426911
NM_016257HPCAL41
NM_014942ANKRD61
NM_007353GNA121
NM_001004304ZNF7401
XM_001132928LOC7289691
NM_004807HS6ST11
NM_032439PHYHIPL1
NM_015090NFASC1
NM_015116LRCH11
NM_024327ZNF5761
NM_018921PCDHGA91
NM_018923PCDHGB21
NM_018929PCDHGC51
NM_002588PCDHGC31
NM_018917PCDHGA41
NM_018918PCDHGA51
NM_032088PCDHGA81
NM_018915PCDHGA21
NM_018922PCDHGB11
NM_003736PCDHGB41
NM_018927PCDHGB71
NM_018924PCDHGB31
NM_018914PCDHGA111
NM_018920PCDHGA71
NM_018913PCDHGA101
NM_018916PCDHGA31
NM_018926PCDHGB61
NM_003735PCDHGA121
NM_032403PCDHGC31
NM_032092PCDHGA111
NM_018912PCDHGA11
NM_018919PCDHGA61
NM_018925PCDHGB51
NM_018928PCDHGC41
NM_006380APPBP21
NM_001407CELSR31
NM_014800ELMO11
NM_001039459ELMO11
NM_130442ELMO11
NM_006767LZTR11
NM_181458PAX31
NM_181460PAX31
NM_181457PAX31
NM_181459PAX31
NM_012069ATP1B41
XM_929878LOC6469151
NM_006547IGF2BP31
NM_133448TMEM132D1
NM_024763WDR781
XM_379228LOC4010931
XM_944985LOC4010931
NM_003234TFRC1
XM_001131408LOC7303501
XM_001127666LOC7308961
NM_014862ARNT21
NM_145244DDIT4L1
NM_006122MAN2A21
NM_022138SMOC21
NM_182635C9orf1641
NM_000545TCF11
NM_015274MAN2B21
NM_052811TRIM131
NM_213590TRIM131
NM_001007278TRIM131
NM_005798TRIM131
NM_005056JARID1A1
NM_001042603JARID1A1
NM_152496MANEAL1
NM_031208FAHD11
NM_153687IKIP1
NM_182594ZNF4541
XM_001132002LOC7321481
XM_001129370LOC7291221
NM_006654FRS21
NM_001042555FRS21
NM_001080428ODZ21
XM_945786ODZ21
XM_945788ODZ21
XM_942208ODZ21
XM_931456ODZ21
NM_001039SCNN1G1
NM_001002857ANXA21
NM_001002858ANXA21
NM_004039ANXA21
NM_032797AIFM21
NM_212555C11orf381
XM_001132858LOC7314241
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
XM_209227LOC6534641
NM_012330MYST41
NM_181678PPP2R2B1
NM_181676PPP2R2B1
NM_181677PPP2R2B1
NM_181675PPP2R2B1
NM_181674PPP2R2B1
NM_004576PPP2R2B1
NM_0011018011
NM_0011018001
NM_016603C5orf51
NM_030806C1orf211
NM_001079526IKZF21
NM_016260IKZF21
NM_0155661
NM_002076GNS1
NM_024830AYTL21
NM_004914RAB361
NM_014333CADM11
NM_0010985171
NM_020776KIAA13281
NM_015471NSL11
NM_001042549NSL11
NM_153487MDGA11
NM_173533TDRD51
NM_006540NCOA21
NM_145321OSBPL31
NM_145320OSBPL31
NM_145322OSBPL31
NM_015550OSBPL31
NM_002235KCNA61
NM_012158FBXL31
NM_001013630AADACL41
NM_182688UBE2G21
NM_003343UBE2G21
NM_001003940BMF1
NM_001003943BMF1
NM_001003942BMF1
NM_033503BMF1
NM_020150SAR1A1
NM_153456HS6ST31
NM_006464TGOLN21
NM_001039649ZMYM51
NM_012073CCT51
NM_020247CABC11
NM_014830ZBTB391
NM_005831CALCOCO21
NM_001002814RAB11FIP11
NM_012234RYBP1
NM_032829C12orf341
NM_020443NAV11
NM_001448GPC41
NM_007073BVES1
NM_147147BVES1
NM_006100ST3GAL61
NM_005400PRKCE1
XM_001131161HEATR21
NM_017802HEATR21
NM_000259MYO5A1
NM_001007024GOSR11
NM_001007025GOSR11
NM_004871GOSR11
NM_001037954DIXDC11
NM_033425DIXDC11
NM_002973ATXN21
NM_144578C14orf321
NM_023080C8orf331
NM_001008404LOC4002581
NM_024577SH3TC21
NM_005329HAS31
NM_005033EXOSC91
NM_001034194EXOSC91
NM_006620HBS1L1
NM_144949SOCS51
NM_014011SOCS51
NM_001010883FAM102B1
NM_015450POT11
NM_001042594POT11
NM_001005339RGS101
NM_002925RGS101
NM_001011708GTPBP91
NM_013341GTPBP91
NM_022841RFXDC21
NM_001025108AFF31
NM_002285AFF31
NM_004582RABGGTB1
NM_005347HSPA51
NM_007335DLEC11
NM_001039585PTGFR1
NM_000959PTGFR1
NM_014725STARD81
NM_173629C18orf261
NM_198847FAM111A1
NM_022074FAM111A1
NM_024871MAP6D11
XM_001133470LOC7292801
XM_001133468LOC7292801
NM_022091ASCC31
NM_001009909LUZP21
NM_024811FLJ125291
NM_005789PSME31
NM_176863PSME31
NM_017563IL17RD1
NM_001080973IL17RD1
NM_016640MRPS301
NM_019045WDR441
NM_173536GABRG11
NM_007283MGLL1
NM_001003794MGLL1
NM_003118SPARC1
NM_001005747CACNB41
NM_000726CACNB41
NM_001005746CACNB41
NM_032471PKIB1
NM_181795PKIB1
NM_181794PKIB1
NM_016026RDH111
NM_014594ZNF354C1
NM_017810ZNF4341
NM_007110TEP11
NM_025059C6orf971
NM_145259ACVR1C1
NM_0011110311
NM_0011110331
NM_0011110321
NM_001033578SGK31
NM_013257SGK31
NM_170709SGK31
XM_001126203LOC7279451
NM_133458ZFP901
NM_014824FCHSD21
NM_000240MAOA1
NM_002397MEF2C1
NM_139126PPIL41
NM_0010988131
NM_0151461
NM_0010988121
NM_144675GSG1L1
NM_0011097631
NM_005107ENDOGL11
XM_001125791LOC6427881
XM_001127886LOC7281001
XM_001132421LOC3883121
NM_004857AKAP51
NM_015713RRM2B1
NM_015608C10orf1371
NM_020346SLC17A61
NM_005053RAD23A1
NM_000782CYP24A11
NM_014910ZNF5071
NM_021818SAV11
NM_138927SON1
NM_030647JHDM1D1
NM_001005920LOC3391231
NM_016312WBP111
NM_145899HMGA11
NM_145901HMGA11
NM_002131HMGA11
NM_145903HMGA11
NM_145902HMGA11
NM_145904HMGA11
NM_145905HMGA11
NM_138370LOC914611
NM_005184CALM31
NM_020750XPO51
NM_021200PLEKHB11
XM_379078FLJ414811
XM_944401FLJ414811
NM_019604CRTAM1
NM_001010923C6orf1901
NM_003743NCOA11
NM_147233NCOA11
NM_147223NCOA11
NM_006773DDX181
NM_0153061
NM_015993PLLP1
NM_213606SLC16A121
NM_000459TEK1
NM_138635H2AFV1
NM_019118C1orf911
NM_005638SYBL11
NM_019607C8orf441
NM_172201KCNE21
NM_003421ZNF37A1
NM_001007094ZNF37A1
NM_024834C10orf1191
NM_003285TNR1
NM_014755SERTAD21
NM_019072SGTB1
NM_019036HMGCLL11
NM_001042406HMGCLL11
NM_005668ST8SIA41
NM_003155STC11
NM_015026MON21
NM_005121THRAP11
NM_0150361
NM_021916ZNF701
NM_021940SMAP11
NM_001044305SMAP11
NM_0010853841
XM_001127175LOC7283201
NM_022824FBXL171
NM_013235RNASEN1
NM_0011004121
NM_006817ERP291
NM_001034025ERP291
NM_006017PROM11
NM_032884C1orf941
NM_001701BAAT1
NM_022367SEMA4A1
NM_145799SEPT61
XM_001133211LOC7290031
XM_001133556LOC7291351
NM_001039840CHIC11
NM_001083620GRIA21
NM_000826GRIA21
NM_001083619GRIA21
NM_152793C7orf411
NM_003494DYSF1
NM_172014TNFSF141
NM_003807TNFSF141
NM_001001479SLC35E41
NM_000136FANCC1
NM_207396RNF2071
NM_001030010ALDH3B11
NM_000694ALDH3B11
NM_016264ZNF441
NM_003670BHLHB21
NM_153825SLA/LP1
NM_000441SLC26A41
NM_001077263TMPRSS131
NM_005476GNE1
NM_032972PCDH11Y1
NM_032971PCDH11Y1
NM_004866SCAMP11
NM_005828WDR681
NM_004079CTSS1
NM_020745AARS21
NM_001031727MGC32071
NM_032285MGC32071
NM_016094COMMD21
NM_052909KIAA19091
NM_030776ZBP11
NM_1384641
NM_175066DDX511
NM_001024844CD821
NM_002231CD821
XM_927226LOC6429211
XM_001134327LOC7323241
NM_138468ICA1L1
NM_030954RNF1701
NM_013432NFKBIL21
NM_001031679MSRB31
NM_198080MSRB31
NM_032718MFSD91
NM_138458LOC1161431
NM_017693BIVM1
NM_153257GIOT-11
NM_138788TMEM45B1
NM_003644GAS71
NM_201432GAS71
NM_201433GAS71
NM_020462ERGIC11
NM_020456C13orf11
NM_002061GCLM1
NM_007054KIF3A1
NM_001039547GK51
NM_015151DIP2A1
NM_052972LRG11
NM_001042575TMPRSS71
NM_003774GALNT41
XM_209363SIRPB21
XM_939897SIRPB21
XM_934619LOC2845771
XM_945015LOC2845771
NM_003950F2RL31
NM_014924KIAA08311
NM_0010854291
NM_152636METT5D11
NM_0011045581
NM_024930ELOVL71
XM_930464LOC6457901
XM_941347LOC6457901
NM_152374FLJ389841
NM_000538RFXAP1
NM_006294UQCRB1
NM_201544LGALS81
NM_006499LGALS81
NM_201545LGALS81
NM_201543LGALS81
NM_007084SOX211
NM_147192DMBX11
NM_172225DMBX11
NM_152277UBTD21
NM_022080NAPB1
NM_014911AAK11
NM_024759NPAL21
NM_001002862DERL31
NM_198440DERL31
NM_001031690FAM131B1
NM_0011031471
NM_0011031481
NM_0011031461
NM_015575TNRC151
NM_203327SLC23A21
NM_005116SLC23A21
XM_001128652FLJ345151
NM_001106ACVR2B1
NM_001002258ATP5G31
NM_001689ATP5G31
NM_004836EIF2AK31
NM_001001389CD441
NM_001001390CD441
NM_001001391CD441
NM_001001392CD441
NM_000610CD441
NM_032557USP381
NM_003262TLOC11
NM_207303ATRNL11
NM_020234DTWD11
NM_014940MON1B1
NM_001017372SLC27A61
NM_014031SLC27A61
NM_014402UQCRQ1
NM_023110FGFR11
NM_023106FGFR11
NM_015850FGFR11
NM_023111FGFR11
NM_023105FGFR11
XM_942780SYNPO21
NM_001030006AP2B11
NM_001282AP2B11
NM_024906SCD51
XM_001134002C17orf411
NM_024857ATAD51
NM_022829SLC13A31
NM_001011554SLC13A31
NM_006974ZNF33A1
NM_006954ZNF33A1
NM_148899FOXP21
NM_014491FOXP21
NM_148898FOXP21
NM_001723DST1
NM_023073FLJ132311
NM_133468BMPER1
NM_001040665STEAP21
NM_152999STEAP21
NM_012478WBP21
NM_020390EIF5A21
NM_032503MCHR21
NM_001040179MCHR21
NM_002764PRPS11
NM_025205MED281
NM_022567NYX1
NM_015596KLK131
NM_003221TFAP2B1
NM_021151CROT1
NM_019027FLJ202731
NM_0010986341
XM_378742FLJ459941
XM_943185FLJ459941
NM_133490KCNG41
NM_130467PAGE51
NM_001013435PAGE51
NM_001001938C9orf471
NM_006963ZNF221
NM_002214ITGB81
NM_152596EXDL11
XM_001130012LOC7315471
XM_001129569LOC7291771
NM_007345ZNF2361
NM_005102FEZ21
NM_001042548FEZ21
NM_007007CPSF61
NM_004681EIF1AY1
NM_182508C13orf301
NM_213645WARS1
NM_004184WARS1
NM_173701WARS1
NM_213646WARS1
NM_145175FAM84A1
NM_001017369SC4MOL1
NM_006745SC4MOL1
NM_014951ZNF3651
NM_170601SIAE1
NM_025163PIGZ1
NM_001076682NCAM11
NM_032119GPR981
NM_030918SNX271
NM_012080HDHD1A1
NM_025152NUBPL1
NM_032873STS-11
NM_001548IFIT11
NM_007157ZXDB1
NM_015576ERC21
NM_031469SH3BGRL21
NM_203390RBM12B1
NM_021973HAND21
NM_152903KBTBD61
NM_0071501
NM_001006600ERBB2IP1
NM_018695ERBB2IP1
NM_005859PURA1
NM_194271RNF341
NM_025126RNF341
NM_003965CCRL21
NM_0010976321
NM_148676DSCR101
NM_173582PGM2L11
NM_032228MLSTD21
NM_021163RBAK1
NM_013997TAC11
NM_013998TAC11
NM_003182TAC11
NM_013996TAC11
XM_291671RBM201
XM_939337RBM201
NM_058170OLFM31
NM_178566ZDHHC211
NM_004087DLG11
NM_0010984241
NM_001039395C9orf681
NM_006344CLEC10A1
NM_182906CLEC10A1
XM_001128799MAP3K21
NM_006520DYNLT31
NM_001004346MTHFD2L1
NM_001032278MMP281
NM_007176C14orf11
XM_001127515LOC7308631
NM_213656KRT391
XM_001127501LOC7284631

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317