Predicted Off-targets for siRNA "gccuuagagucuccugagcu" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

24 hits were found for CCUUAGAGUCUCCUGAGCU (9 guide strand hits and 15 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
XR_018108 LOC441811 2786 2804 CCacAGAGUCUCCUGAGCU43 2 15 bc false   <90%   3795
XR_017184 LOC441811 2786 2804 CCacAGAGUCUCCUGAGCU43 2 15 bc false   <90%   3795
NM_020804 PACSIN1 1815 1833 CCaaAGAGUCUCCUGAGCc38 3 14 bc false   <90%   4282
NM_001040456 RHBDD2 1226 1244 CCUaAGAGUCUCCUGAcaa32 4 12 c false   <90%   1756
NM_001040457 RHBDD2 1348 1366 CCUaAGAGUCUCCUGAcaa32 4 12 c false   <90%   1878
NM_000744 CHRNA4 2404 2422 uucaAGAGUCUCCUGAGCU30 4 15 bc false   <90%   5540
NM_014882 ARHGAP25 1209 1227 aacUAuAGUCUCCUGAGCU3 4 13 bc false   <90%   2957
NM_001007231 ARHGAP25 1214 1232 aacUAuAGUCUCCUGAGCU3 4 13 bc false   <90%   2962
NM_015245 ANKS1A 4171 4189 CCUUAGAGgCaCCUGAGCa-26 3 8 c false   <90%   6355


Hits to Sense strand
















AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_015341 NCAPH 63 81 AGCUCAGGAGACgCcAAGG64 2 12   false   <90%   4495
XM_932025 LOC644171 359 377 AaCUCAGGAGACUCcAAGa58 3 12 c false   <90%   755
XM_944971 LOC644171 359 377 AaCUCAGGAGACUCcAAGa58 3 12 c false   <90%   755
NM_024854 FLJ22028 1232 1250 AGuUCAGGAGACUCUAuuG54 3 13 c false   <90%   3171
XR_015408 LOC730793 1302 1320 AGuUCAGGAGACUCUAuuG54 3 13 c false   <90%   4118
XR_016381 LOC642732 1302 1320 AGuUCAGGAGACUCUAuuG54 3 13 c false   <90%   4118
NM_016252 BIRC6 15001 15019 uGCUgAGGAGACUCUAAuG43 3 12 c false   <90%   16079
NM_182811 PLCG1 4334 4352 gGCaCAGGAGACUCcAAGG36 3 10 c false   <90%   5202
NM_002660 PLCG1 4337 4355 gGCaCAGGAGACUCcAAGG36 3 10 c false   <90%   5205
NM_019118 C1orf91 636 654 AGCaCAGGAGACUCUAcGc34 3 12 c false   <90%   1108
NM_015584 POLDIP2 770 788 gGCUCgGGAGACgCUAAGG24 3 6   false   <90%   2723
NM_018178 GOLPH3L 291 309 gauUCuGGAGACUCUAAGG3 4 13 bc false   <90%   3127
NM_006729 DIAPH2 8441 8459 ucuUCuGGAGACUCUAAGG3 4 13 bc false   <90%   9335
NM_002547 OPHN1 159 177 uGgUCAGGAaACUCUAAGG-4 3 9 bc false   <90%   7350
NM_206886 CCDC18 4320 4338 AGCUCAGGAuACUgUAAGc-7 3 9 c false   <90%   4658


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1600
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_001077349ZNF6823
NM_033196ZNF6823
NM_005095ZMYM43
NM_032727INA3
NM_020782KLHDC53
NM_015568PPP1R16B3
NM_001005609EDA3
NM_001399EDA3
NM_003212TDGF12
NM_001025247TAF5L2
XM_001130020KIAA11472
XM_001130081KIAA11472
NM_001080392KIAA11472
NM_139056ADAMTS162
NM_014793LCMT22
NM_138736GNAO12
NM_0010099842
XM_045290LOC1515792
XM_938633LOC1515792
NM_014670BZW12
NM_015879ST8SIA32
NM_025015HSPA12A2
NM_018325C9orf722
NM_000809GABRA42
NM_032446MEGF102
NM_015225KIAA03672
NM_001289CLIC22
NM_017952PTCD32
NM_145257C1orf962
NM_014883FAM13A12
NM_001015045FAM13A12
NM_006290TNFAIP32
NM_015271TRIM22
NM_001039580MAP92
NM_207295MBNL12
NM_207293MBNL12
NM_207297MBNL12
NM_207296MBNL12
NM_207294MBNL12
NM_021038MBNL12
NM_207292MBNL12
NM_022819PLA2G2F2
NM_001040665STEAP22
NM_152999STEAP22
XM_001128799MAP3K22
NM_006252PRKAA22
NM_014911AAK12
NM_001039840CHIC12
NM_052832SLC26A72
NM_015042ZNF6092
NM_173195KCNIP22
NM_173194KCNIP22
NM_173191KCNIP22
NM_014591KCNIP22
NM_173192KCNIP22
NM_173193KCNIP22
NM_003215TEC2
NM_001004301ZNF8132
NM_015087SPG202
NM_006682FGL22
NM_016275SELT2
NM_152793C7orf412
NM_007050PTPRT2
NM_133170PTPRT2
NM_199040NUDT42
NM_019094NUDT42
NM_004285H6PD2
NM_145313RASGEF1A2
NM_020462ERGIC12
NM_007350PHLDA12
NM_0011112832
NM_000618IGF12
NM_0011112842
NM_020119ZC3HAV12
XM_929931LOC6534892
NM_005054RGPD52
XM_001126221LOC7278512
XM_001126260LOC7278512
XM_001133591LOC7295402
XM_001133590LOC7295402
XM_001126233LOC7278512
XM_001126248LOC7278512
XM_001126272LOC7278512
NM_207372SH2D4B2
NM_006016CD1642
NM_138473SP12
XM_001127087FLJ439502
NM_000961PTGIS2
NM_014910ZNF5072
NM_172069PLEKHH22
NM_0010986382
NM_019594LRRC8A2
NM_005082TRIM252
NM_032832LRP112
NM_014840NUAK12
NM_001106ACVR2B2
NM_017919STX172
NM_018947CYCS2
NM_005502ABCA12
NM_020699GATAD2B2
NM_000332ATXN12
NM_017563IL17RD2
NM_001080973IL17RD2
NM_017754C6orf1072
NM_001017916CYB5612
NM_001915CYB5612
NM_001017917CYB5612
NM_012250RRAS22
NM_0011026692
NM_207361FREM22
NM_030626LRRC272
NM_130847AMOTL12
NM_030621DICER12
NM_177438DICER12
NM_019008SMCR7L2
NM_020853KIAA14672
NM_012219MRAS2
NM_0010850492
NM_007085FSTL12
NM_014005PCDHA92
NM_015471NSL12
NM_001042549NSL12
NM_005036PPARA2
NM_001001928PPARA2
NM_001039960SLC4A82
NM_017437CPSF22
NM_015328KIAA08282
NM_014951ZNF3652
NM_021012KCNJ122
XM_001126195LOC7279422
NM_016612SLC25A372
NM_152404UGT3A12
NM_0208232
NM_033224PURB2
NM_004586RPS6KA32
NM_213566DFFA2
NM_207426FLJ468312
NM_153273IHPK12
NM_001006115IHPK12
NM_002613PDPK12
NM_031268PDPK12
NM_032193RNASEH2C2
NM_005076CNTN22
NM_1736012
NM_0010996502
NM_002309LIF2
NM_004112FGF112
NM_017644KLHL242
NM_001039570KREMEN12
NM_001039571KREMEN12
NM_153456HS6ST32
NM_005262GFER1
NM_001300KLF61
NM_002486NCBP11
NM_022901LRRC191
NM_033029LMLN1
NM_015946PELO1
NM_017776ZNF6731
NM_006352ZNF2381
NM_205768ZNF2381
NM_030755TXNDC11
NM_0011045441
NM_0011045451
NM_017938FAM70A1
XM_371369MIA31
XM_943876MIA31
XM_943869MIA31
XM_943873MIA31
XM_496436MIA31
XM_932541MIA31
XM_932548MIA31
NM_175052ST8SIA41
NM_001031748C12orf401
NM_021014SSX31
NM_175698SSX21
NM_003147SSX21
NM_178549ZNF6781
NM_182472EPHA51
NM_004439EPHA51
NM_153033KCTD71
NM_005156ROD11
NM_0011127171
NM_0011127201
NM_014988DKFZP686A012471
NM_0011127191
NM_0011127181
NM_001042508LOC6534831
NM_001018058TFEC1
NM_012252TFEC1
NM_080650ATPBD41
NM_138484SGOL11
NM_001012412SGOL11
NM_001012410SGOL11
NM_001042669ARHGAP241
NM_001025616ARHGAP241
NM_031305ARHGAP241
NM_032433ZNF3331
NM_153705KDELC21
NM_005910MAPT1
NM_016841MAPT1
NM_016834MAPT1
NM_016835MAPT1
NM_182503DEADC11
NM_152487TMEM561
NM_015079TBC1D2B1
XM_929902LOC6469381
XM_937239LOC6481891
NM_004992MECP21
NM_175921LOC2856361
NM_001017930WDR42B1
NM_019613WDR45L1
NM_004870MPDU11
NM_004808NMT21
NM_001271CHD21
NM_020327ACVR1B1
NM_015493ANKRD251
NM_153022C12orf591
NM_024644C14orf1691
NM_001949E2F31
NM_170744UNC5B1
NM_0321731
NM_145165CHURC11
NM_203305FAM102A1
NM_001035254FAM102A1
NM_138375CABLES11
NM_004274AKAP61
NM_001040429PCDH171
NM_000321RB11
NM_002971SATB11
NM_006475POSTN1
NM_015460MYRIP1
NM_018243SEPT111
NM_133374ZNF6181
NM_005578LPP1
NM_001144AMFR1
NM_032160DSEL1
NM_001007525NWD11
NM_001037278GGPS11
NM_004837GGPS11
NM_001037277GGPS11
NM_004187JARID1C1
NM_017991FLJ100811
XM_001125745ZNF4691
XM_939259ZNF4691
NM_014603CDR2L1
NM_178177NMNAT31
NM_006460HEXIM11
XM_934287LOC1448171
XM_945225LOC1448171
NM_001009959KIAA11891
NM_020711KIAA11891
NM_031845MAP21
NM_031847MAP21
NM_001039538MAP21
NM_002374MAP21
NM_012287CENTB21
NM_173497HECTD21
NM_025204TRABD1
NM_052886MAL21
NM_001040152PEG101
NM_015068PEG101
NM_024769ASAM1
NM_006540NCOA21
NM_0011003891
NM_000045ARG11
NM_032457PCDH71
NM_018019MED91
NM_018440PAG11
NM_017709FAM46C1
NM_001008710RBPMS1
NM_001008711RBPMS1
NM_006867RBPMS1
NM_032924ZNF31
NM_024807TREML21
NM_004523KIF111
NM_014381MLH31
NM_001040108MLH31
NM_006493CLN51
NM_0011016761
NM_001040455SIDT21
NM_004364CEBPA1
NM_030810TXNDC51
NM_022085TXNDC51
NM_018290PGM21
NM_004287GOSR21
XM_001134215PDPR1
NM_017990PDPR1
NM_020800IFT801
NM_003630PEX31
NM_206909PSD31
NM_015310PSD31
NM_178313SPTBN11
NM_199000LHFPL31
NM_004663RAB11A1
NM_0209231
NM_001012990ARL13A1
NM_001007527LMBRD21
NM_001080494C1orf341
XM_934658C1orf341
XM_945965C1orf341
XM_942427C1orf341
XM_930328C1orf341
XM_945959C1orf341
NM_021642FCGR2A1
NM_201563FCGR2C1
NM_001005411FCGR2C1
NM_001005410FCGR2C1
NM_017661SUHW41
NM_001002843SUHW41
NM_030949PPP1R14C1
NM_000212ITGB31
NM_005737ARL4C1
NM_001010873BZRPL11
NM_000252MTM11
NM_000859HMGCR1
XM_001127470PABPC51
NM_080832PABPC51
NM_198795TDRD11
NM_152723CCDC891
NM_015911ZNF6911
NM_0207211
NM_153256C10orf471
NM_024639ZNF322A1
NM_199005ZNF322B1
NM_133646ZAK1
NM_002958RYK1
NM_001005861RYK1
NM_032717MAG11
NM_032814TMEM1181
NM_0011099031
NM_173519MGC346461
NM_001031617COX191
NM_002742PRKD11
NM_207446LOC4004511
NM_003462DNALI11
NM_001008401ZNF7611
NM_033512TSPYL51
NM_001008390CGGBP11
NM_003663CGGBP11
NM_018014BCL11A1
NM_138559BCL11A1
NM_032373PCGF51
NM_017548CDV31
NM_004621TRPC61
NM_022482GZF11
NM_152874FAS1
NM_152876FAS1
NM_152877FAS1
NM_152872FAS1
NM_152871FAS1
NM_152873FAS1
NM_000043FAS1
NM_152875FAS1
NM_031854KRTAP4-121
NM_148962OXER11
NM_018092NETO21
NM_015677SH3YL11
NM_002367MAGEB41
NM_001083625ANKRD121
NM_015208ANKRD121
NM_014733ZFYVE161
NM_0011052511
NM_001029998SLC10A71
NM_173536GABRG11
NM_0207001
NM_001040202PAQR31
NM_006255PRKCH1
XM_001130508LOC7317091
NM_012164FBXW21
NM_004735LRRFIP11
NM_022068FAM38B1
NM_005969NAP1L41
NM_152551C6orf1511
NM_012412H2AFV1
NM_201516H2AFV1
NM_201436H2AFV1
NM_201517H2AFV1
NM_021035ZNFX11
NM_014037SLC6A161
NM_031287SF3B51
NM_004432ELAVL21
NM_212551LYSMD11
NM_020390EIF5A21
NM_001029955WDR21B1
NM_178509STXBP41
NM_178130TXNDC61
NM_145259ACVR1C1
NM_0011110311
NM_0011110331
NM_0011110321
NM_152707SLC25A161
NM_0011001641
NM_0011001661
NM_014721PHACTR21
NM_0011001651
NM_005611RBL21
NM_001286CLCN61
NM_015898ZBTB7A1
NM_016546C1RL1
NM_138278BNIPL1
NM_033151ABCC111
NM_145186ABCC111
NM_032583ABCC111
NM_032682FOXP11
NM_006613GRAP1
NM_021149COTL11
NM_001038SCNN1A1
NM_014184CNIH41
NM_001010891MTX31
NM_005230ELK31
NM_020753CASKIN21
NM_005598NHLH11
NM_006485FBLN11
NM_004530MMP21
XM_945019LOC6434411
XM_933124LOC6434411
NM_014141CNTNAP21
NM_002940ABCE11
NM_001040876ABCE11
NM_016441CRIM11
NM_014683ULK21
XM_928464LOC1465171
NM_014877HELZ1
XM_930349LOC6472861
XM_941201LOC6472861
NM_024122APOO1
NM_0011132391
NM_022740HIPK21
NM_0179501
NM_032788ZNF5141
NM_024749VASH21
NM_004767GPR37L11
NM_014933SEC31A1
NM_016211SEC31A1
NM_001077207SEC31A1
NM_001077208SEC31A1
NM_001077206SEC31A1
NM_000617SLC11A21
NM_080625C20orf1601
NM_004028AQP41
NM_001650AQP41
NM_005513GTF2E11
NM_014155ZBTB441
NM_207352CYP4V21
NM_001148ANK21
NM_020977ANK21
NM_145861EDARADD1
NM_080738EDARADD1
NM_001428ENO11
NM_001017970TMEM30B1
NM_014411NAG81
NM_005671UBXD61
NM_000270NP1
NM_021814ELOVL51
NM_019119PCDHB91
NM_014803ZNF5181
NM_012308FBXL111
NM_007039PTPN211
NM_032980DTNA1
NM_001390DTNA1
NM_032975DTNA1
NM_031474NRIP21
NM_080797DIDO11
NM_014935PLEKHA61
NM_014851KLHL211
NM_207578PRKACB1
NM_018211RAVER21
XM_379100LOC4009581
XM_945436LOC4009581
NM_145037FAM55C1
NM_014999RAB211
NM_014773KIAA01411
NM_032296FLYWCH11
NM_213604ADAMTSL51
NM_004133HNF4G1
NM_197941ADAMTS61
NM_172193KLHDC11
NM_014881DCLRE1A1
NM_005829AP3S21
NM_001007246BRWD11
XM_940667SDC31
NM_005665EVI51
NM_024705DHRS121
NM_000813GABRB21
NM_021911GABRB21
NM_001957EDNRA1
NM_001040875GDAP11
NM_018972GDAP11
NM_015226KIAA03501
NM_006990WASF21
NM_013279C11orf91
NM_005017PCYT1A1
NM_005558LAD11
NM_130446KLHL61
NM_001039569AP1S31
NM_003415ZNF2681
NM_001024855ZNF1971
NM_022071SH2D4A1
NM_001029880SFMBT21
NM_170721MSI21
NM_006036PREPL1
NM_001042386PREPL1
NM_001042385PREPL1
NM_005938MLLT71
XM_001131339LOC7310341
XM_001127795LOC7281781
NM_080491GAB21
NM_012296GAB21
NM_002581PAPPA1
NM_002885RAP1GAP1
NM_022496ACTR61
NM_152742GPC21
NM_022977ACSL41
NM_004458ACSL41
NM_032300TCHP1
NM_001013659ZNF7931
NM_144722FLJ235771
NM_001011668CHCHD71
NM_024300CHCHD71
NM_001011671CHCHD71
NM_001011667CHCHD71
NM_001011670CHCHD71
NM_001011669CHCHD71
NM_015277NEDD4L1
NM_002040GABPA1
NM_004598SPOCK11
NM_012226P2RX21
NM_174872P2RX21
NM_016318P2RX21
NM_170683P2RX21
NM_174873P2RX21
NM_170682P2RX21
NM_004738VAPB1
NM_032214SLA21
NM_175077SLA21
NM_144586LYPD11
NM_001077427LYPD11
NM_173065IL28RA1
NM_173064IL28RA1
NM_170743IL28RA1
NM_016297PCYOX11
NM_003173SUV39H11
NM_024746KIAA1822L1
NM_016343CENPF1
NM_005308GRK51
NM_0011024541
NM_0011016721
NM_016423ZNF2191
NM_153271SH3PX31
NM_078483SLC36A11
NM_152584HSFY11
NM_001001877HSFY21
NM_006420ARFGEF21
NM_006621AHCYL11
NM_022733SMAP1L1
NM_198901SRI1
NM_003130SRI1
NM_005099ADAMTS41
NM_018466ALG131
NM_003417ZNF2641
NM_014584ERO1L1
NM_032943SYTL21
NM_206929SYTL21
NM_206930SYTL21
NM_206927SYTL21
NM_032379SYTL21
NM_206928SYTL21
NM_173644C20orf1971
NM_152449LYSMD41
NM_017935BANK11
NM_001083907BANK11
NM_003870IQGAP11
NM_006300ZNF2301
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_005385NKTR1
NM_001160APAF11
NM_181868APAF11
NM_181869APAF11
NM_013229APAF11
NM_181861APAF11
NM_014832TBC1D41
NM_000898MAOB1
NM_006467POLR3G1
NM_001387DPYSL31
NM_032303HSDL21
NM_0011056591
NM_152418WDR21C1
NM_020448NPAL31
NM_002310LIFR1
XM_942240LOC6505571
NM_054030MRGPRX21
XM_173119LOC2551301
XM_943077LOC6478751
NM_014702KIAA04081
NM_016101NIP71
NM_006924SFRS11
NM_001078166SFRS11
NM_002445MSR11
NM_145177DHRSX1
NM_014848SV2B1
NM_014704KIAA05621
NM_025219DNAJC51
NM_002745MAPK11
NM_203350ZRANB21
NM_005455ZRANB21
NM_014824FCHSD21
NM_153018ZFP31
NM_000276OCRL1
NM_001587OCRL1
NM_203343EPB411
NM_203342EPB411
NM_004437EPB411
NM_001201BMP31
NM_015044GGA21
NM_001039380C10orf251
NM_024329EFHD21
NM_145010C10orf631
NM_002246KCNK31
NM_024511C4orf151
NM_002541OGDH1
NM_000337SGCD1
NM_012278ITGB1BP21
NM_004977KCNC31
NM_014299BRD41
NM_004172SLC1A31
NM_001077621VPS37D1
NM_024345WDR321
NM_006096NDRG11
NM_152695ZNF4491
NM_032121DKFZp564K1421
XM_001128660LOC7288661
NM_030918SNX271
XM_001127102LOC6478591
XM_001130815LOC6478591
NM_173635FLJ402351
XM_940582LOC6514301
XM_001127939LOC6514301
NM_014396VPS411
NM_080631VPS411
NM_000868HTR2C1
NM_001031684SFRS71
NM_020651PELI11
NM_181723EFHA21
XM_930224LOC6471901
XM_941815LOC6471901
NM_018247TMEM30A1
NM_032731TXNL51
NM_020652ZNF286A1
NM_012464TLL11
NM_024087ASB91
NM_000084CLCN51
NM_018233OGFOD11
XM_001130949LOC1583761
XM_001129749LOC1583761
NM_0151231
NM_015332NUDCD31
NM_006212PFKFB21
NM_025154UNC84A1
NM_145298APOBEC3F1
NM_182609ZNF6771
NM_001013620ALG10B1
XM_376444LOC1334911
XM_941190LOC1334911
NM_130830LRRC151
NM_003347UBE2L31
NM_198157UBE2L31
NM_015367BCL2L131
NM_001012755MCART61
NM_001032731OAS21
NM_000414HSD17B41
NM_014838ZBED41
NM_021101CLDN11
NM_024039MIS121
NM_001039693FLJ379531
NM_001987ETV61
NM_015045WAPAL1
NM_006938SNRPD11
NM_173473C10orf1041
NM_014746RNF1441
NM_015077SARM11
NM_015000STK38L1
NM_012175FBXO31
NM_018040GPATCH21
NM_198273LYSMD31
NM_001009899KIAA20181
NM_213596FOXN41
NM_025170DEPDC21
NM_006079CITED21
NM_006742PSKH11
NM_024577SH3TC21
NM_152860SP71
NM_198532C19orf351
NM_144579SFXN51
NM_002161IARS1
NM_013417IARS1
NM_003394WNT10B1
XM_001125970LOC7304651
NM_005964MYH101
NM_032492JAGN11
NM_001042376INS-IGF21
NM_178129P2RY81
NM_014240LIMD11
NM_017739POMGNT11
NM_001343DAB21
NM_000429MAT1A1
NM_024873TNIP31
NM_198868TBC1D9B1
NM_015043TBC1D9B1
NM_006187OAS31
NM_007370RFC51
NM_181578RFC51
NM_024940DOCK51
NM_005831CALCOCO21
NM_0011110401
NM_014703VPRBP1
NM_003480MFAP51
NM_002996CX3CL11
NM_022336EDAR1
NM_000668ADH1B1
NM_152721DOK61
NM_006287TFPI1
NM_173495PTCHD11
NM_018326GIMAP41
NM_022566MESDC11
XM_378661C17orf511
XM_944416C17orf511
NM_0152951
NM_005717ARPC51
NM_001032394GPR1261
NM_020455GPR1261
NM_198569GPR1261
NM_001032395GPR1261
NM_178456C20orf851
NM_0010983981
NM_004371COPA1
NM_002090CXCL31
NM_020973GBA31
NM_015553PIP3-E1
NM_020375C12orf51
NM_006504PTPRE1
NM_130435PTPRE1
NM_015221DNMBP1
NM_001014989LAT1
NM_001014987LAT1
NM_001014988LAT1
NM_014387LAT1
NM_007137ZNF811
NM_144596TTC81
NM_198310TTC81
NM_198309TTC81
NM_001923DDB11
NM_138328RHBDL31
XM_376305DUB31
NM_001037814GAB41
XM_001125827LOC7278201
NM_138318KCNK101
NM_138317KCNK101
NM_021161KCNK101
NM_001037293PALM21
NM_053016PALM21
NM_1827627A51
NM_133633SYN31
NM_003490SYN31
NM_014909VASH11
NM_0149811
NM_021632ZNF3501
NM_001042724PVRL21
NM_004840ARHGEF61
NM_014615KIAA01821
XM_934619LOC2845771
XM_945015LOC2845771
NM_007048BTN3A11
NM_007047BTN3A21
NM_0010853751
NM_206818OSCAR1
NM_133169OSCAR1
NM_130771OSCAR1
NM_133168OSCAR1
NM_002111HD1
NM_001008392CTDSPL1
NM_005808CTDSPL1
NM_015073SIPA1L31
NM_001001480KRTAP5-51
NM_130773CNTNAP51
NM_000063C21
NM_000209PDX11
NM_017944USP471
NM_197956C9orf901
NM_001010879ZIK11
NM_018351FGD61
NM_199124C11orf631
NM_181784SPRED21
NM_017943FBXO341
NM_018369DEPDC1B1
NM_016643ZNF7711
NM_000749CHRNB31
NM_005417SRC1
NM_198291SRC1
NM_012081ELL21
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_017879ZNF4161
NM_0011003901
NM_152558IQCE1
NM_000522HOXA131
NM_003983SLC7A61
NM_001076785SLC7A61
NM_0010937721
NM_000222KIT1
NM_004859CLTC1
NM_018145FAM82C1
XM_001129151LOC7290471
NM_004359CDC341
NM_052847GNG71
NM_213589RAPH11
NM_145185MAP2K71
NM_014850SRGAP31
NM_001033117SRGAP31
NM_005627SGK1
NM_015627LDLRAP11
NM_002716PPP2R1B1
XM_001125753MUC3B1
NM_015690STK361
NM_139245PPM1L1
NM_017409HOXC101
NM_201999ELF21
NM_006874ELF21
NM_007285GABARAPL21
NM_152444ZADH11
NM_001001664LOC3397451
NM_014750DLG71
NM_013252CLEC5A1
NM_199511CCDC801
NM_199512CCDC801
NM_024900PHF171
NM_002334LRP41
NM_194271RNF341
NM_025126RNF341
NM_024836ZNF6721
NM_000326RLBP11
NM_001467SLC37A41
NM_001001502SNCB1
NM_003085SNCB1
NM_016246HSD17B141
NM_207333ZNF3201
NM_020457THAP111
NM_198503KCNT21
NM_015158ANKRD151
NM_153186ANKRD151
NM_019891ERO1LB1
NM_014333CADM11
NM_0010985171
NM_022445TPK11
NM_001042482TPK11
NM_002888RARRES11
NM_005226EDG31
NM_001497B4GALT11
NM_144968RIBC11
NM_001042472ABHD121
NM_002523NPTX21
NM_001012756ZNF2601
NM_015198COBL1
NM_007007CPSF61
NM_032012C9orf51
NM_0010997341
NM_014117C16orf721
NM_030641APOL61
NM_021216ZNF711
NM_003032ST6GAL11
NM_173217ST6GAL11
NM_173216ST6GAL11
NM_030809FAM130A11
NM_014805EPM2AIP11
NM_198542ZNF7731
NM_004742MAGI11
NM_173214NFAT51
NM_006599NFAT51
NM_138714NFAT51
NM_0011131781
NM_138713NFAT51
NM_005228EGFR1
NM_031956TTC291
NM_001017440CALN11
NM_031468CALN11
NM_147189FAM110B1
NM_022460HS1BP31
NM_002740PRKCI1
NM_001008393LOC2017251
NM_004852ONECUT21
NM_020805KLHL141
NM_0011110471
NM_0011110461
NM_0011110451
NM_003914CCNA11
NM_144600C16orf631
XM_001130582LOC7283921
XM_001132379LOC7309941
NM_006675TSPAN91
NM_014506TOR1B1
NM_001042417RUFY21
NM_001076786QSER11
NM_025027ZNF6061
NM_0153061
NM_0011013721
NM_024596MCPH11
NM_181435C1QTNF31
NM_030945C1QTNF31
NM_015564LRRTM21
NM_015076CDC2L61
NM_006122MAN2A21
NM_207411XKR51
NM_001609ACADSB1
NM_016422RNF1411
NM_001004317LIN28B1
NM_033084FANCD21
NM_016072GOLT1B1
NM_133493CD1091
NM_001008215MGC521101
NM_004623TTC41
NM_012214MGAT4A1
NM_020708SLC12A51
NM_013313YPEL11
NM_014809KIAA03191
NM_153051MTMR31
NM_021090MTMR31
NM_153050MTMR31
NM_002382MAX1
NM_145113MAX1
NM_145112MAX1
NM_138270ATRX1
NM_000489ATRX1
NM_022497MRPS251
NM_177553GAS21
NM_005256GAS21
NM_020844KIAA14561
NM_0010996771
NM_015602TOR1AIP11
NM_014631SH3PXD2A1
NM_018411HR1
NM_005144HR1
NM_199046TEPP1
NM_199456TEPP1
NM_001030288SPN1
NM_003123SPN1
NM_152837SNX161
NM_152836SNX161
NM_022133SNX161
NM_024575TNFAIP8L21
NM_000948PRL1
NM_024875SYNPO2L1
NM_001386DPYSL21
NM_201548CERKL1
NM_033132ZIC51
NM_021020LZTS11
NM_1779662'-PDE1
NM_017831RNF1251
NM_173079RUNDC11
NM_018394ABHD101
NM_014048MKL21
NM_021815SLC5A71
NM_0010997721
NM_000779CYP4B11
NM_007354C3orf271
NM_020808SIPA1L21
NM_145263SPATA181
NM_017994C7orf421
NM_006259PRKG21
NM_022828YTHDC21
NM_014744TBC1D51
NM_002649PIK3CG1
NM_018708FEM1A1
NM_080671KCNE41
XM_001128041LOC2852051
XM_001128618LOC2852051
XM_935946LOC6419121
XM_931994LOC6440901
XM_945887LOC6440901
NM_012193FZD41
NM_022458LMBR11
NM_001003891PCQAP1
NM_015889PCQAP1
NM_015385SORBS11
NM_001034954SORBS11
NM_001034957SORBS11
NM_001034955SORBS11
NM_001034956SORBS11
NM_006434SORBS11
NM_024991SORBS11
NM_005500SAE11
NM_178126LOC1624271
NM_024676C1orf1131
NM_152424FAM123B1
NM_024947PHC31
NM_020816KIF171
NM_032484GHDC1
NM_024771NAT111
NM_012218ILF31
NM_153034ZNF4881
NM_001167BIRC41
NM_001004323LOC4025731
NM_031453FAM107B1
NM_018124RFWD31
NM_057170GIT21
NM_057169GIT21
NM_014776GIT21
NM_138362FAM104B1
NM_002440MSH41
NM_001730KLF51
NM_005504BCAT11
NM_003118SPARC1
NM_007203PALM2-AKAP21
NM_147150PALM2-AKAP21
NM_001004065AKAP21
NM_017712PGPEP11
NM_175895C12orf611
NM_001033564LOC6192081
NM_023002HAPLN41
NM_024558C14orf1381
NM_001040662C14orf1381
NM_005915MCM61
NM_005729PPIF1
NM_004815ARHGAP291
XM_939296MGA1
NM_001080541MGA1
XM_932727MGA1
XM_944092MGA1
NM_139057ADAMTS171
NM_006768BRAP1
XM_929034LOC6460741
NM_000232SGCB1
NM_012382TTC331
NM_018129PNPO1
XM_928871LOC6440381
XM_926379LOC4408391
XM_001128517LOC7286011
XM_001125884LOC7278361
XM_926363LOC6423131
NM_003029SHC11
NM_006482DYRK21
NM_003583DYRK21
NM_006548IGF2BP21
NM_001007225IGF2BP21
NM_001077484SLC38A11
NM_030674SLC38A11
NM_030640DUSP161
NM_032822FLJ146681
NM_001334CTSO1
NM_007257PNMA21
NM_044472CDC421
NM_0010992701
NM_018361AGPAT51
NM_198595AFAP11
NM_021638AFAP11
NM_017810ZNF4341
NM_031464RPS6KL11
NM_133445GRIN3A1
NM_152945DRB11
XM_939100MYO5B1
NM_001080467MYO5B1
NM_004401DFFA1
NM_004926ZFP36L11
NM_004614TK21
NM_002264KPNA11
NM_015094HIC21
NM_015033FNBP11
NM_003654CHST11
NM_024533CHST51
XM_001131019LOC7318461
XM_001131201LOC7297511
NM_004302ACVR1B1
NM_181308WDR201
NM_144574WDR201
NM_181302WDR201
NM_001018005TPM11
NM_000366TPM11
NM_003681PDXK1
NM_012248SEPHS21
NM_033035TSLP1
NM_138551TSLP1
NM_005860FSTL31
NM_016028SUV420H11
NM_014374REPIN11
NM_0010996961
NM_013400REPIN11
NM_0010996951
NM_020133AGPAT41
NM_004745DLGAP21
NM_020374C12orf41
NM_001005505CACNA2D21
NM_006030CACNA2D21
NM_153756FNDC51
NM_020245TULP41
NM_001007466TULP41
NM_018640LMO31
NM_001001395LMO31
NM_000177GSN1
NM_198252GSN1
NM_001884HAPLN11
NM_173680ZNF7751
NM_001080975REPS21
NM_004726REPS21
XM_001130398LOC7316661
XM_001131009LOC7296801
NM_001010908C1QL31
NM_198581ZC3H61
NM_173598KSR21
NM_006151LPO1
NM_001002836ZNF7871
NM_199054MKNK21
NM_016647C8orf551
NM_0011110191
NM_145117NAV21
NM_182964NAV21
NM_0011110181
XM_001132119LOC2574071
XM_001129456LOC2574071
XM_001126768LOC7279831
XM_001129328LOC7284181
NM_007195POLI1
NM_025081KIAA13051
NM_001007097NTRK21
NM_182551LYCAT1
NM_001002257LYCAT1
NM_198271LMOD31
NM_004510SP1101
NM_207034EDN31
NM_000114EDN31
NM_207032EDN31
NM_207033EDN31
NM_001010971SAMD131
NM_006203PDE4D1
NM_0011046311
NM_005188CBL1
NM_005927MFAP31
NM_004096EIF4EBP21
NM_032594INSM21
NM_004844SH3BP51
NM_001018009SH3BP51
NM_004594SLC9A51
NM_018963BRWD11
NM_022549FEZ11
NM_001040647RCP91
NM_001040648RCP91
NM_014478RCP91
NM_004066CETN11
NM_006148LASP11
NM_003045SLC7A11
NM_012325MAPRE11
NM_006789APOBEC21
NM_002479MYOG1
NM_016513ICK1
NM_014920ICK1
NM_000795DRD21
NM_016574DRD21
NM_152345ANKRD13B1
NM_006478GAS2L11
NM_152237GAS2L11
NM_152236GAS2L11
NM_001039577CCNL21
NM_002662PLD11
NM_015090NFASC1
NM_032797AIFM21
NM_017902HIF1AN1
XM_001129796LOC6455131
NM_013450BAZ2B1
XM_001126445LOC7280581
XM_001125988LOC7304721
NM_015245ANKS1A1
NM_013989DIO21
NM_001007023DIO21
NM_000793DIO21
NM_016540GPR831
NM_004394DAP1
NM_144767AKAP131
NM_006738AKAP131
NM_007200AKAP131
NM_014811KIAA06491
NM_015654NAT91
NM_014028OSTM11
NM_173683XKR61
NM_001079809TMEM183B1
NM_138391TMEM183A1
NM_175907ZADH21
NM_005440RND21
NM_001246ENTPD21
NM_203468ENTPD21
NM_024692CLIP41
NM_002048GAS11
NM_021078GCN5L21
NM_006391IPO71
NM_152594SPRED11
NM_152547BTNL91
NM_017933PID11
NM_0011008181
NM_182758WDR721
NM_007286SYNPO1
NM_0010994041
NM_198056SCN5A1
NM_0010994051
NM_000335SCN5A1
NM_030914URM11
NM_032622LNX11
NM_172337OTX21
NM_021728OTX21
NM_015064ERC11
NM_178039ERC11
NM_178040ERC11
NM_178038ERC11
NM_178037ERC11
NM_0209081
NM_005078TLE31
NM_0011051921
NM_014586HUNK1
NM_033121ANKRD13A1
NM_001018067SERBP11
NM_015640SERBP11
NM_001018069SERBP11
NM_001018068SERBP11
NM_030785RSHL11
NM_012465TLL21
NM_003489NRIP11
NM_000436OXCT11
NM_001029864KIAA17551
NM_014635GCC21
NM_181453GCC21
NM_005438FOSL11
NM_000628IL10RB1
NM_018170P15RS1
NM_0154731
NM_003262TLOC11
NM_001031681CTNS1
NM_004937CTNS1
NM_004385VCAN1
NM_017671C20orf421
NM_006987RPH3AL1
NM_031275TEX121
NM_006807CBX11
NM_0011096891
NM_021061ZNF2501
NM_020340KIAA12441
NM_021783EDA2R1
NM_005835SLC17A21
NM_177402SYT21
NM_001029859KCTD211
NM_015323KIAA07761
NM_001259CDK61
NM_152628MGC397151
NM_023074ZNF6491
NM_133370YTHDC11
NM_001031732YTHDC11
NM_198468C6orf1671
NM_005935AFF11
NM_003648DGKD1
NM_152879DGKD1
NM_0010992201
NM_0071501
NM_001695ATP6V1C11
NM_015002FBXO211
NM_033624FBXO211
NM_130848C5orf201
NM_031286SH3BGRL31
NM_198491FAM92B1
NM_006358SLC25A171
NM_133330WHSC11
NM_001042424WHSC11
NM_133331WHSC11
NM_133335WHSC11
NM_033631LUZP11
NM_015886PI151
NM_000451SHOX1
XM_001126881LOC7282131
XM_001126851LOC7307031
NM_213607CCDC1031
NM_001004432LINGO41
NM_144969ZDHHC151
NM_003777DNAH111
NM_012153EHF1
NM_032503MCHR21
NM_001040179MCHR21
NM_032836FIZ11
NM_002657PLAGL21
NM_002928RGS161
NM_005902SMAD31
NM_002206ITGA71
NM_016831PER31
NM_005941MMP161
NM_020781ZNF3981
NM_170686ZNF3981
NM_033315RASL10B1
NM_003761VAMP81
NM_178466C20orf711
NM_001042439C20orf711
NM_001042486DLGAP41
NM_014902DLGAP41
NM_183006DLGAP41
NM_177988MRPL471
NM_020409MRPL471
NM_015321CRTC11
NM_0010984821
NM_006371CRTAP1
NM_014438IL1F81
NM_001010862SPIN31
NM_018292QRSL11
NM_004866SCAMP11
NM_197960DPP81
NM_197961DPP81
NM_130434DPP81
NM_017743DPP81
NM_007106UBL31
NM_199280LOC1651861
NM_014752SPCS21
NM_018488TBX41
NM_030771CCDC341
NM_016052RRP151
NM_0010988321
NM_032837FAM104A1
XM_939915LOC4013211
XM_379483LOC4013211
XM_380099LOC4013211
NM_0010981731
NM_052996PRDM71
NM_052840BRUNOL61
NM_021951DMRT11
NM_152330FRMD61
NM_001042481FRMD61
NM_024086METT10D1
NM_032932RAB11FIP41
NM_020830WDFY11
NM_005109OXSR11
NM_001010883FAM102B1
NM_001008529MXRA71
NM_198530MXRA71
NM_002211ITGB11
NM_000382ALDH3A21
NM_001031806ALDH3A21
NM_025059C6orf971
NM_152291MUC71
NM_012333MYCBP1
NM_006111ACAA21
NM_000602SERPINE11
NM_020718USP311
NM_015571SENP61
NM_0011004091
NM_002069GNAI11
NM_001796CDH81
NM_000216KAL11
NM_019851FGF201
NM_014331SLC7A111
NM_152289ZNF5611
NM_012098ANGPTL21
XM_934649C1orf341
XM_945958C1orf341
NM_016373WWOX1
NM_006566CD2261
NM_020809ARHGAP201
NM_001010867C1orf691
NM_018384GIMAP51
NM_016488PPHLN11
NM_013231FLRT21
NM_022716PRRX11
NM_006902PRRX11
NM_014389PELP11
NM_001031679MSRB31
NM_198080MSRB31
NM_021072HCN11
NM_021960MCL11
NM_182763MCL11
NM_017858TIPIN1
NM_004155SERPINB91
NM_030927TSPAN141
NM_0010987211
NM_0010987221
NM_004485GNG41
XM_944216LOC6504841
XM_374162LOC3893701
NM_0071131
NM_004101F2RL21
NM_173516PNLDC11
NM_003440ZNF1401
NM_005512LRRC321
NM_198479TPRX11
NM_031243HNRPA2B11
NM_002137HNRPA2B11
NM_022166XYLT11
XM_001125986LOC2838241
NM_173562KCTD201
NM_171982TRIM351
NM_004078CSRP11
NM_020463SMEK21
NM_182935MOBP1
NM_017762MTMR101
NM_001010845LOC1238761
XM_936869LOC1238761
NM_018710TMEM55A1
NM_202003FOXM11
NM_202002FOXM11
NM_021953FOXM11
NM_033221TRIM141
NM_014788TRIM141
NM_001035521GTF3C21
NM_001521GTF3C21
NM_080669SLC46A11
NM_004177STX31
NM_006841SLC38A31
NM_005191CD801
NM_001977ENPEP1
NM_153347TMEM86A1
NM_001040102TMEM101
NM_033207TMEM101
NM_001040103TMEM101
NM_005630SLCO2A11
NM_0010985141
NM_152459MGC454381
NM_181505PPP1R1B1
NM_032192PPP1R1B1
NM_001080540LOC3892931
XM_371741LOC3892931
XM_942792LOC6421701
NM_030940ISCA11
NM_014279OLFM11
NM_004539NARS1
XM_001131308LOC7309611
NM_198153TREML41
NM_018427RRN31
NM_018036C14orf1031
NM_152380TBX151
NM_001083924C1orf1161
NM_023938C1orf1161
NM_033505SELI1
NM_001007156NTRK31
NM_003474ADAM121
NM_002886RAP2B1
NM_005161AGTRL11
NM_014846KIAA01961
NM_006210PEG31
NM_004171SLC1A21
NM_030664PTER1
NM_001001484PTER1
NM_207103UNQ57831
NM_001254CDC61
NM_013391DMGDH1
NM_005336HDLBP1
NM_203346HDLBP1
XM_001130495LOC7284291
NM_0314131
NM_000178GSS1
NM_024953C12orf301
NM_145278C1orf1501
NM_001080421UNC13A1
NM_007332TRPA11
NM_021977SLC22A31
NM_017915C12orf481
NM_0011025751
NM_005898CAPRIN11
NM_017656ZNF5621
NM_005840SPRY31
NM_018269ADI11
NM_020310MNT1
NM_006534NCOA31
NM_181659NCOA31
NM_0011127361
NM_015224C3orf631
NM_003748ALDH4A11
NM_002035FVT11
NM_007325GRIA31
NM_000828GRIA31
NM_0146871
NM_020702KIAA11611
NM_015199ANKRD281
NM_033637BTRC1
NM_003939BTRC1
NM_003629PIK3R31
XM_039733KIAA09531
XM_940464KIAA09531
NM_024784ZBTB31
NM_024585ARMC71
NM_001233CAV21
NM_198212CAV21
NM_212558LOC4014981
NM_022003FXYD61
NM_178832C10orf831
NM_0010988311
NM_0011108221
NM_032859ABHD131
NM_181802UBE2C1
NM_181801UBE2C1
NM_181800UBE2C1
NM_007019UBE2C1
NM_181799UBE2C1
NM_181803UBE2C1
NM_001045476LOC4015511
NM_004836EIF2AK31
NM_203290POLR1C1
NM_001001669FLJ416031
NM_002646PIK3C2B1
NM_018400SCN3B1
NM_001040151SCN3B1
NM_014839LPPR41
NM_032940POLR2C1
NM_054111IHPK31
NM_138568EXOC3L21
NM_001931DLAT1
NM_173545C2orf131
NM_015074KIF1B1
NM_001080745DGKG1
NM_001346DGKG1
NM_001080744DGKG1
NM_138381OXNAD11
NM_000260MYO7A1
NM_213595ISCU1
NM_014301ISCU1
NM_000609CXCL121
NM_033540MFN11
NM_178470WDR40B1
NM_145693LPIN11
NM_152265BTF3L41
NM_000245MET1
NM_019604CRTAM1
NM_018242FLJ108471
NM_003005SELP1
NM_006062SMYD51
NM_153214FLJ374401
NM_020796SEMA6A1
NM_024057NUP371
NM_001005747CACNB41
NM_000726CACNB41
NM_001005746CACNB41
NM_015526CLIP31
NM_145041TMEM106A1
XM_001133059LOC7287721
XM_001133074LOC7287721
XM_001133066LOC7287721
NM_025176KIAA09801
NM_000391TPP11
NM_024422DSC21
NM_004949DSC21
NM_016243CYB5R11
NM_000259MYO5A1
NM_001995ACSL11
NM_004273CHST31
NM_152496MANEAL1
NM_002193INHBB1
NM_0011097541
NM_002837PTPRB1
NM_018948ERRFI11
NM_023071SPATS21
NM_018557LRP1B1
NM_001364DLG21
NM_016562TLR71
NM_000330RS11
NM_005437NCOA41
NM_002092GRSF11
NM_0010984771
NM_004865TBPL11
NM_033656BRWD11
NM_001010853ACY1L21
NM_144618MGC298911
NM_024917CXorf341
NM_018518MCM101
NM_182751MCM101
NM_016055MRPL481
NM_018264TYW11
NM_015026MON21
XM_941162LOC4009501
XM_376049LOC4009501
NM_130809PRRC11
NM_030625CXXC61
NM_006861RAB351
NM_005238ETS11
NM_152590IFLTD11
NM_001005209MGC998131
NM_001292CLK31
NM_005819STX61
NM_198484ZNF6211
NM_0010984141
NM_0010853571
NM_181780BTLA1
NM_018977NLGN31
NM_002395ME11
NM_021962ABR1
NM_001092ABR1
NM_004804CIAO11
NM_0251851
NM_015176FBXO281
NM_001080510LOC1245121
XM_940962LOC1245121
NM_207380FLJ433391
NM_144597C15orf401
NM_207303ATRNL11
NM_002610PDK11
NM_001008495TMEM641
NM_001039709CBFA2T21
NM_001032999CBFA2T21
NM_005093CBFA2T21
NM_020437ASPHD21

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317