Predicted Off-targets for siRNA "ugauaacacaguucgaguc" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

No (unfiltered) hits were found for :UGAUAACACAGUUCGAGUC


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1348
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_001079526IKZF23
NM_016260IKZF23
NM_001029863C6orf1203
NM_015030FRYL3
NM_000232SGCB3
NM_001527HDAC22
NM_030625CXXC62
NM_007137ZNF812
NM_207012AP3M12
NM_012095AP3M12
NM_002099GYPA2
NM_031216SEH1L2
NM_144718CCDC522
NM_016388TRAT12
NM_203349SHC42
NM_030960SPACA12
NM_000321RB12
NM_198513PHF20L12
NM_006722MITF2
NM_000248MITF2
NM_198158MITF2
NM_198177MITF2
NM_198178MITF2
NM_198159MITF2
NM_012329MMD2
NM_020177FEM1C2
NM_007007CPSF62
NM_001003760KLHL312
NM_014585SLC40A12
NM_001080530LOC920172
NM_139071SMARCD12
NM_003076SMARCD12
NM_018958C15orf22
NM_182757IBRDC22
NM_005665EVI52
NM_003037SLAMF12
NM_080836STK352
NM_152793C7orf412
NM_020774MIB12
XM_001129292MBOAT22
NM_173214NFAT52
NM_006599NFAT52
NM_138714NFAT52
NM_0011131782
NM_138713NFAT52
NM_020448NPAL32
NM_203403C9orf1502
NM_173536GABRG12
NM_178585WDFY32
NM_014991WDFY32
NM_001012755MCART62
NM_007249KLF122
NM_003034ST8SIA12
NM_015156RCOR12
NM_003507FZD72
NM_133370YTHDC12
NM_001031732YTHDC12
NM_031435THAP22
NM_004852ONECUT22
NM_006731FCMD2
NM_001079802FCMD2
NM_152624DCP22
NM_024989PGAP12
NM_006915RP22
NM_001037954DIXDC12
NM_033425DIXDC12
NM_172344KCNG32
NM_133329KCNG32
NM_017658KLHL282
NM_024770METTL82
NM_199324OTUD42
NM_0011026532
NM_001009959KIAA11892
NM_020711KIAA11892
NM_058169LOH12CR12
NM_004898CLOCK2
NM_015891CDC402
NM_020792AADACL12
NM_017551GRID12
NM_033319CENPL2
NM_001079673FNDC3A2
NM_014923FNDC3A2
NM_198468C6orf1672
NM_152900MAGI32
NM_001106ACVR2B2
NM_001046SLC12A22
NM_001079911DMP12
NM_004407DMP12
NM_173834YIPF62
NM_000813GABRB22
NM_021911GABRB22
NM_006775QKI2
NM_001040665STEAP22
NM_152999STEAP22
NM_0330262
NM_001042492NF12
NM_000267NF12
NM_178157FUT81
NM_178156FUT81
NM_178155FUT81
NM_004480FUT81
NM_178154FUT81
NM_024911GPR1771
NM_005840SPRY31
NM_001014342FLG21
NM_001329CTBP21
NM_0010839141
NM_022802CTBP21
NM_003421ZNF37A1
NM_001007094ZNF37A1
NM_003685KHSRP1
NM_016138COQ71
NM_001083112GPD21
NM_000408GPD21
NM_145307PLEKHK11
NM_017864INTS81
NM_015200SCC-1121
NM_0011003991
NM_016126C1orf411
NM_020198CCDC471
NM_018327SPTLC31
NM_0011031471
NM_0011031481
NM_0011031461
NM_015575TNRC151
NM_053053TADA1L1
NM_025083EDC31
NM_006828ASCC31
NM_012287CENTB21
NM_000289PFKM1
NM_0207091
NM_153267MAMDC21
NM_006212PFKFB21
NM_024828C9orf821
NM_201548CERKL1
NM_152527SLC16A141
NM_001465FYB1
NM_199335FYB1
NM_0010988441
NM_001030060SAMD51
NM_031965GSG21
NM_017953C1orf1811
NM_017644KLHL241
NM_000090COL3A11
NM_004781VAMP31
NM_012112TPX21
NM_130446KLHL61
NM_024539RNF1281
NM_194463RNF1281
XM_001134449KBTBD91
XM_940375KBTBD91
NM_000623BDKRB21
NM_003633ENC11
NM_003108SOX111
NM_0010996661
NM_001009554MFAP3L1
NM_021647MFAP3L1
NM_004028AQP41
NM_001650AQP41
NM_033121ANKRD13A1
NM_003983SLC7A61
NM_001076785SLC7A61
NM_002406MGAT11
NM_018133MSL2L11
NM_181443BTBD31
NM_014962BTBD31
NM_000800FGF11
NM_033137FGF11
NM_033136FGF11
NM_001025108AFF31
NM_002285AFF31
NM_000791DHFR1
NM_006064RRAGB1
NM_016656RRAGB1
NM_024641MANEA1
NM_007043KRR11
NM_174902LDLRAD31
NM_022894PAPOLG1
NM_144682SLFN131
NM_012130CLDN141
NM_144492CLDN141
NM_0208231
NM_198460GBP61
XM_001133760ZNF5191
NM_015980HMP191
NM_022469GREM21
NM_019083CCDC761
XM_373690LOC3882821
XM_001133719LOC3882821
NM_005737ARL4C1
NM_052962IL22RA21
NM_181309IL22RA21
NM_181310IL22RA21
NM_052978TRIM91
NM_004866SCAMP11
NM_032199ARID5B1
NM_014906PPM1E1
XM_930805LOC6424261
XM_932285LOC6446521
NM_144984C10orf721
NM_001402EEF1A11
NM_005314GRPR1
NM_017554PARP141
NM_0011001641
NM_0011001661
NM_014721PHACTR21
NM_0011001651
NM_012431SEMA3E1
NM_152731C6orf651
NM_014787DNAJC61
NM_130834OPA11
NM_015560OPA11
NM_130836OPA11
NM_130831OPA11
NM_130832OPA11
NM_130837OPA11
NM_130833OPA11
NM_130835OPA11
NM_021200PLEKHB11
NM_001013624LOC2011811
NM_000562C8A1
NM_020860STIM21
NM_004775B4GALT61
NM_032811TBRG11
NM_012382TTC331
NM_018085IPO91
NM_017754C6orf1071
NM_194318B3GALTL1
NM_203494USP501
NM_173083LIN91
NM_152869RGN1
NM_004683RGN1
NM_014743KIAA02321
NM_0011005901
NM_182490ZNF2271
NM_194298SLC16A91
NM_014953DIS31
NM_002522NPTX11
NM_007010DDX521
NM_152300DDX521
NM_005399PRKAB21
NM_021191NEUROD41
NM_206909PSD31
NM_015310PSD31
NM_014710GPRASP11
NM_0010994101
NM_0010994111
XM_944838LOC2857331
XM_379432LOC2857331
NM_152914MGC338941
NM_014805EPM2AIP11
NM_003184TAF21
NM_005069SIM21
NM_181519SYT151
NM_003044SLC6A121
NM_005562LAMC21
NM_178517PIGW1
XM_001131034LOC7315151
XM_001131024LOC7315151
XM_001126254LOC7305381
XM_001131842LOC7303581
XM_001131526LOC7298521
NM_025113C13orf181
NM_000202IDS1
NM_001010980C1orf1301
NM_021205RHOU1
NM_004734DCLK11
NM_172370DAOA1
NM_173598KSR21
NM_020962NOPE1
NM_001148ANK21
NM_020977ANK21
NM_032849C13orf331
NM_014441SIGLEC91
NM_199421SOCS41
NM_080867SOCS41
NM_032160DSEL1
NM_031366COL4A31
NM_000091COL4A31
NM_031365COL4A31
NM_031362COL4A31
NM_033505SELI1
NM_001025266LOC2853821
NM_014048MKL21
NM_033439IL331
NM_152316C11orf461
NM_145689APBB11
NM_001164APBB11
NM_002581PAPPA1
NM_153034ZNF4881
NM_020704FAM40B1
NM_016101NIP71
NM_000378WT11
NM_024424WT11
NM_024425WT11
NM_024426WT11
NM_001001684FLJ458311
NM_004921CLCA31
NM_007073BVES1
NM_147147BVES1
NM_014705DOCK41
NM_024913FLJ219861
NM_020773TBC1D141
NM_198077C1orf521
NM_001037339PDE4B1
NM_002600PDE4B1
NM_001037340PDE4B1
NM_001037341PDE4B1
XM_927936LOC6448411
XM_935685LOC6419331
XM_938176LOC6448411
NM_003038SLC1A41
NM_078470COX151
NM_004376COX151
NM_017956TRMT121
NM_016571GLULD11
NM_032471PKIB1
NM_181795PKIB1
NM_181794PKIB1
NM_005233EPHA31
NM_001077691ALG91
NM_001077692ALG91
NM_024740ALG91
NM_001077690ALG91
NM_032800C1orf1981
NM_001690ATP6V1A1
NM_015267CUTL21
NM_003824FADD1
NM_000809GABRA41
NM_138467TYW31
NM_0010129941
NM_001678ATP1B21
NM_005045RELN1
NM_173054RELN1
NM_013231FLRT21
NM_001031689PLAA1
NM_004253PLAA1
XM_933028FLJ204441
XM_001134277LOC2213621
NM_001012981ZKSCAN21
NM_015355SUZ121
NM_173551ANKS61
NM_024584CCDC1211
NM_003183ADAM171
NM_015149RGL11
XM_001132325LOC7300811
XM_001127777LOC7309341
NM_005126NR1D21
XM_001130839NR1D21
NM_007021C10orf101
NM_015064ERC11
NM_178039ERC11
NM_178040ERC11
NM_178038ERC11
NM_178037ERC11
NM_020125SLAMF81
NM_000533PLP11
NM_199478PLP11
NM_024841FLJ142131
NM_018092NETO21
NM_006016CD1641
NM_0011097541
NM_002837PTPRB1
NM_004285H6PD1
NM_006571DCTN61
XM_938519DKFZP434I07141
XM_929673DKFZP434I07141
NM_030621DICER11
NM_177438DICER11
NM_0010099841
NM_001009598RXRG1
NM_0011050781
NM_005241EVI11
NM_0011050771
NM_144781PDCD21
NM_0208271
NM_022977ACSL41
NM_004458ACSL41
NM_012290TLK11
NM_001025203U2AF11
NM_006758U2AF11
NM_001025204U2AF11
NM_145259ACVR1C1
NM_0011110311
NM_0011110331
NM_0011110321
NM_004736XPR11
NM_181598SPG3A1
NM_015915SPG3A1
NM_001005747CACNB41
NM_000726CACNB41
NM_001005746CACNB41
NM_153619SEMA6D1
NM_153618SEMA6D1
NM_153616SEMA6D1
NM_153617SEMA6D1
NM_020858SEMA6D1
NM_017693BIVM1
NM_018566YOD11
NM_001025247TAF5L1
NM_015554GLCE1
NM_001081461JMJD61
NM_014286FREQ1
NM_152577ZNF6451
NM_012215MGEA51
NM_001024843TNRC6B1
NM_015088TNRC6B1
NM_0011096891
NM_021061ZNF2501
NM_001693ATP6V1B21
NM_015840ADAR1
NM_015841ADAR1
NM_001025107ADAR1
NM_001111ADAR1
NM_025214CCDC681
NM_000192TBX51
NM_080717TBX51
NM_181486TBX51
NM_000391TPP11
NM_152374FLJ389841
NM_015065EXPH51
NM_003270TSPAN61
NM_001042402ASAHL1
NM_020781ZNF3981
NM_170686ZNF3981
NM_003804RIPK11
NM_005506SCARB21
NM_198570VWC21
NM_175767IL6ST1
NM_175768GRIK21
NM_021956GRIK21
NM_033224PURB1
NM_0245241
NM_018229C14orf1081
NM_018351FGD61
XM_001130956ANKS61
NM_206595ESRRG1
NM_001438ESRRG1
NM_206594ESRRG1
NM_002667PLN1
NM_173497HECTD21
NM_033428C9orf1231
NM_005475SH2B31
NM_001025233CLLU11
NM_014961RUFY31
NM_000765CYP3A71
NM_024666FLJ115061
NM_005034POLR2K1
NM_144617HSPB61
NM_017662TRPM61
NM_014415ZBTB111
XM_001133877FLJ412781
XM_001129851FLJ412781
NM_139319SLC17A81
NM_022458LMBR11
NM_012309SHANK21
NM_004956ETV11
NM_0010853771
NM_002387MCC1
NM_007168ABCA81
NM_194439RNF2121
NM_000338SLC12A11
NM_152641ARID21
NM_004255COX5A1
XM_930959LOC4008311
XM_943808LOC4008311
NM_024645ZMAT41
NM_144629RFTN21
NM_015954DERA1
NM_178586PPP2R5C1
NM_002719PPP2R5C1
NM_005756GPR641
NM_001079859GPR641
NM_001079858GPR641
NM_001079860GPR641
XM_376795FLJ458721
XM_940037FLJ458721
NM_018195C11orf571
NM_001082969C11orf571
NM_001082970C11orf571
NM_001014380KATNAL11
NM_032116KATNAL11
NM_004441EPHB11
NM_032457PCDH71
NM_1779662'-PDE1
NM_016540GPR831
NM_030971SFXN31
NM_017656ZNF5621
NM_145313RASGEF1A1
XM_001125929LOC7278081
XM_001127286LOC7305641
NM_016248AKAP111
NM_152666PLD51
NM_138340ABHD31
NM_024617ZCCHC61
NM_152409C5orf241
NM_015055SWAP701
NM_018040GPATCH21
NM_0153481
NM_152292RG9MTD21
XM_936128HLA-DQA11
XM_936213HLA-DQA11
XM_001134217HLA-DQA11
NM_001025100MBP1
NM_018059FLJ103241
NM_0010996421
NM_018348FLJ111711
NM_022482GZF11
NM_032352BRMS1L1
NM_015092SMG11
NM_016602CCR101
NM_019027FLJ202731
NM_0010986341
NM_001083591CUGBP21
NM_001025077CUGBP21
NM_006561CUGBP21
NM_001025076CUGBP21
NM_006595API51
NM_006701TXNL4A1
NM_002595PCTK21
NM_001018109PIR1
NM_003662PIR1
NM_006544EXOC51
NM_052840BRUNOL61
NM_014839LPPR41
NM_001039618CREBZF1
NM_022497MRPS251
NM_0321731
NM_017761PNRC21
NM_000097CPOX1
NM_003272GPR137B1
NM_002025AFF21
NM_201431RASSF61
NM_177532RASSF61
NM_015275KIAA10331
NM_144996ARL13B1
NM_182896ARL13B1
NM_031418TMEM16C1
NM_001077657C3orf431
NM_016821OGG11
NM_016828OGG11
NM_016829OGG11
NM_016826OGG11
NM_016827OGG11
NM_001826CKS1B1
NM_003994KITLG1
NM_000899KITLG1
NM_021639GPBP1L11
NM_001001668ZNF4701
NM_0011055431
NM_006363SEC23B1
NM_032986SEC23B1
NM_032985SEC23B1
NM_018310BRF21
NM_018042SLFN121
NM_0208481
NM_021964ZNF1481
NM_018970GPR851
NM_001040020FAM3C1
NM_014888FAM3C1
NM_0011112831
NM_000618IGF11
NM_0011112841
XM_001126963KIF271
NM_017576KIF271
NM_003480MFAP51
NM_018151RIF11
NM_145000RANBP3L1
XM_928464LOC1465171
NM_020525IL221
NM_005482PIGK1
NM_005748YAF21
XM_930748LOC6423611
XM_498491LOC4399941
NM_003092SNRPB21
NM_198220SNRPB21
NM_016353ZDHHC21
XM_375929LOC4008561
NM_004614TK21
NM_015576ERC21
NM_015317PUM21
NM_022484TMEM1681
NM_001005502CPM1
NM_198320CPM1
NM_001874CPM1
NM_019046ANKRD161
NM_052811TRIM131
NM_213590TRIM131
NM_001007278TRIM131
NM_005798TRIM131
NM_0207001
NM_017909RMND11
NM_0010984841
NM_003759SLC4A41
NM_007257PNMA21
NM_019084CCNJ1
NM_207647FSD1L1
NM_178171GSDM11
NM_000743CHRNA31
NM_1827627A51
NM_178818CMTM41
NM_181521CMTM41
NM_015517MIZF1
NM_198971MIZF1
NM_016356DCDC21
NM_152551C6orf1511
NM_033285TP53INP11
NM_198859PRICKLE21
NM_014880CD3021
NM_017768LRRC401
NM_022841RFXDC21
NM_005121THRAP11
NM_016123IRAK41
NM_020375C12orf51
NM_006779CDC42EP21
NM_005578LPP1
NM_004497FOXA31
NM_005250FOXL11
NM_001002762DNAJB121
NM_017626DNAJB121
NM_001042508LOC6534831
NM_001042599ERBB41
NM_005235ERBB41
NM_014293NPTXR1
NM_002293LAMC11
NM_001733C1R1
NM_000651CR11
NM_000573CR11
NM_173468MOBKL1A1
NM_033028BBS41
NM_012471TRPC51
NM_006699MAN1A21
NM_022491SUDS31
NM_005869SDCCAG101
NM_020666CLK41
NM_004687MTMR41
NM_016040TMED51
NM_017736THUMPD11
NM_003417ZNF2641
XM_938268TBX181
NM_001080508TBX181
NM_001002233RAB11FIP11
NM_025151RAB11FIP11
NM_001002814RAB11FIP11
NM_0209081
NM_005078TLE31
NM_0011051921
NM_024422DSC21
NM_004949DSC21
NM_007026DUSP141
NM_144571CNOT6L1
NM_013286RBM15B1
NM_001038SCNN1A1
NM_003070SMARCA21
NM_139045SMARCA21
NM_180989GPR1801
NM_205848SYT61
NM_153825SLA/LP1
NM_152889CHST131
NM_001332CTNND21
NM_1736011
NM_0010996501
NM_153748KCNC21
NM_139136KCNC21
NM_001025073C3orf171
NM_015412C3orf171
NM_001025072C3orf171
NM_173826C3orf231
NM_001001994GPM6B1
NM_005278GPM6B1
NM_001001996GPM6B1
NM_000519HBD1
NM_020752GPR1581
NM_004992MECP21
NM_005100AKAP121
NM_144497AKAP121
NM_032117MND11
NM_006948STCH1
NM_000555DCX1
NM_178152DCX1
NM_178153DCX1
NM_178151DCX1
NM_018055NODAL1
NM_0212141
NM_001609ACADSB1
NM_172247CSF2RA1
NM_172249CSF2RA1
XM_929181CCDC351
XM_940957CCDC351
NM_177967UBAC21
NM_001067TOP2A1
NM_033281MRPS361
NM_020810TRMT51
NM_002039GAB11
NM_207123GAB11
NM_015000STK38L1
NM_021825CCDC90B1
XM_944029LOC6479791
NM_019018FAM105A1
NM_014904RAB11FIP21
NM_016221DCTN41
NM_005202COL8A21
NM_005213CSTA1
NM_001419ELAVL11
NM_001034852SMOC11
NM_022137SMOC11
NM_138768MYEOV1
NM_198709ARSB1
NM_006281STK31
NM_015111N4BP31
NM_031200CCR91
NM_006641CCR91
NM_000208INSR1
NM_001079817INSR1
NM_001040429PCDH171
NM_005819STX61
NM_014820TOMM70A1
NM_0010839621
NM_003199TCF41
NM_032873STS-11
NM_138991BACE21
NM_138992BACE21
NM_012105BACE21
NM_178126LOC1624271
NM_001083621ZBTB401
NM_014870ZBTB401
NM_138572TBN1
NM_001007098SCP21
XM_001129349LOC7283461
NM_144778MBNL21
NM_207304MBNL21
NM_031483ITCH1
NM_005197CHES11
NM_0010854711
NM_001128AP1G11
NM_001030007AP1G11
NM_024705DHRS121
NM_173344ST3GAL11
NM_003033ST3GAL11
NM_017958PLEKHB21
NM_0011006231
NM_007147ZNF1751
NM_024577SH3TC21
NM_024085ATG9A1
NM_001077198ATG9A1
NM_001010978LDLRAD11
NM_001032280TFAP2A1
NM_003220TFAP2A1
NM_001042425TFAP2A1
NM_020940KIAA16001
NM_005741ZNF2631
NM_001884HAPLN11
NM_199464KCNRG1
NM_080659C11orf521
NM_020926BCOR1
NM_001004342TRIM671
NM_0010992941
XM_936510KIAA16441
NM_182966NEDD91
NM_020546ADCY21
NM_015569DNM31
NM_017772TBC1D22B1
NM_021633KLHL121
NM_001007267PLA2R11
NM_001010915PTPLAD21
NM_1449931
NM_005188CBL1
NM_000147FUCA11
NM_032105PPP1R12B1
NM_002481PPP1R12B1
NM_006166NFYB1
XM_001128879LOC7289031
XM_001128866LOC7289031
NM_002268KPNA41
NM_004744LRAT1
NM_002657PLAGL21
NM_173829P18SRP1
NM_007038ADAMTS51
NM_018036C14orf1031
NM_004270CRSP91
NM_0011008161
NM_030759NRBF21
XM_001127763LOC7308201
XM_001127798LOC7283811
NM_0010996921
XM_926071LOC6425921
NM_024301FKRP1
NM_001039885FKRP1
NM_030821PLA2G12A1
NM_138619GGA31
NM_014001GGA31
NM_031212SLC25A281
NM_004756NUMBL1
NM_014957DENND31
NM_212558LOC4014981
XM_938941LOC6437901
XM_927071LOC6437901
NM_004268CRSP61
XM_001126406LOC7279221
XM_001126391LOC7279221
XM_001126417LOC7279221
NM_007125UTY1
NM_153686LCORL1
NM_005028PIP5K2A1
NM_002265KPNB11
NM_003412ZIC11
NM_0151141
NM_004755RPS6KA51
NM_017443POLE31
NM_006805HNRPA01
NM_057180VPS291
NM_016226VPS291
NM_017922PRPF391
NM_012416RANBP61
NM_198484ZNF6211
NM_0010984141
NM_0011025751
NM_006591POLD31
NM_032980DTNA1
NM_001390DTNA1
NM_032975DTNA1
NM_144641PPM1M1
NM_000210ITGA61
XM_001129642TXNRD31
XM_001130163TXNRD31
NM_025225PNPLA31
NM_152470RNF1651
NM_0151311
NM_145034TOR1AIP21
NM_001024947YIPF51
NM_030799YIPF51
NM_021572ENPP51
NM_001013437SEH1L1
NM_001037637BTF31
NM_001207BTF31
NM_005006NDUFS11
XM_944366LOC3752951
XM_374020LOC3752951
NM_181077GOLGA8A1
NM_001023567GOLGA8B1
XM_926998LOC6436991
XM_001126392LOC7279091
XM_001126407LOC7279091
XM_001126378LOC7279091
XM_001126877LOC7280471
XM_001126928LOC7280471
XM_001126912LOC7280471
XM_001126904LOC7280471
XM_001127034LOC7280801
XM_001127051LOC7280801
XM_001127002LOC7280801
XM_001127022LOC7280801
NM_178135HSD17B131
NM_001011545BACH11
NM_014946SPAST1
NM_199436SPAST1
NM_006547IGF2BP31
NM_005813PRKD31
XM_001132480SLCO3A11
XM_001127768LOC6487081
NM_017778WHSC1L11
NM_012153EHF1
NM_006029PNMA11
NM_145206VTI1A1
XM_001134327LOC7323241
XM_001134208LOC7299751
NM_019009TOLLIP1
NM_015836WARS21
NM_201263WARS21
NM_002339LSP11
NM_001013255LSP11
NM_001013253LSP11
NM_001013254LSP11
NM_004311ARL31
NM_181789GLDN1
NM_053067UBQLN11
NM_013438UBQLN11
NM_032178SLC7A6OS1
NM_024672THAP91
NM_0010854271
NM_0010854251
NM_0010854261
NM_000487ARSA1
NM_0010854281
NM_014498GOLPH41
NM_024906SCD51
NM_014494TNRC6A1
NM_058166TRIM61
NM_001003818TRIM61
NM_183238ZNF6051
NM_000305PON21
NM_001018161PON21
NM_004681EIF1AY1
NM_020933ZNF3171
NM_152835PDIK1L1
XM_001126066LOC7304971
XM_001131300LOC1491571
XM_001132625LOC1491571
NM_020714ZNF4901
NM_006061CRISP31
NM_198581ZC3H61
NM_005240ETV31
NM_001259CDK61
NM_003428ZNF841
NM_014682ST181
NM_207577MAP61
NM_173529C18orf541
NM_024594PANK31
NM_004117FKBP51
NM_003262TLOC11
NM_001006681SPIN2B1
NM_001006682SPIN2B1
NM_001006683SPIN2B1
NM_019003SPIN2A1
NM_004537NAP1L11
NM_139207NAP1L11
NM_001875CPS11
XM_942780SYNPO21
NM_006628ARPP-191
NM_138799MBOAT21
NM_018094GSPT21
NM_002919RFX31
XM_001131606LOC7310031
XM_001132798LOC7290401
NM_0010984861
NM_006632SLC17A31
NM_002021FMO11
NM_015071ARHGAP261
NM_145039MGC163851
NM_018128TSR11
NM_018700TRIM361
NM_052931SLAMF61
NM_152699SENP51
NM_001080975REPS21
NM_004726REPS21
NM_152735ZBTB91
NM_020651PELI11
NM_002157HSPE11
NM_024416OGN1
NM_014057OGN1
NM_033014OGN1
NM_020673RAB22A1
NM_006750SNTB21
NM_183376ARRDC41
NM_178457C20orf1741
NM_007159SLMAP1
NM_178844NLRC31
NM_015855WIT11
NM_013989DIO21
NM_001007023DIO21
NM_000793DIO21
NM_001025079CD471
NM_001777CD471
NM_198793CD471
NM_018057SLC6A151
NM_001042404CEP1701
NM_014812CEP1701
NM_001042405CEP1701
NM_015271TRIM21
NM_014765TOMM201
NM_078483SLC36A11
NM_172037RDH101
NM_014926SLITRK31
NM_000386BLMH1
NM_181882PRX1
NM_020956PRX1
XM_936833LOC6441961
XM_927389LOC6441961
NM_032303HSDL21
NM_033133CNP1
NM_002853RAD11
NM_133377RAD11
NM_020708SLC12A51
NM_004282BAG21
NM_024813C1orf821
XM_944271USP451
XM_939661USP451
XM_944273USP451
XM_944255USP451
XM_931094USP451
XM_931124USP451
XM_931115USP451
NM_001080481USP451
NM_007068DMC11
NM_152594SPRED11
NM_0010996451
NM_024607PPP1R3B1
NM_019002ETAA11
NM_003411ZFY1
NM_175747OLIG31
NM_021960MCL11
NM_182763MCL11
NM_001001330REEP31
NM_031302GLT8D21
XM_036942LOC1502211
XM_036936LOC4408041
NM_0156721
NM_173562KCTD201
NM_015567SLITRK51
NM_005151USP141
NM_001037334USP141
NM_052832SLC26A71
NM_015471NSL11
NM_001042549NSL11
NM_203459CAMSAP1L11
NM_000849GSTM31
NM_006174NPY5R1
XM_001128965LOC7289751
NM_212554LOC3998181
NM_014877HELZ1
NM_198963DHX571
NM_002711PPP1R3A1
NM_000093COL5A11
NM_017924C14orf1191
NM_001040202PAQR31
NM_016641MIR161
NM_0071131
NM_022171TCTA1
NM_001167BIRC41
NM_133330WHSC11
NM_001042424WHSC11
NM_133331WHSC11
NM_133335WHSC11
XM_001130398LOC7316661
XM_001131009LOC7296801
NM_005795CALCRL1
NM_015256ACSL61
NM_001009185ACSL61
NM_020648TWSG11
NM_001033RRM11
NM_032446MEGF101
NM_018376NIPSNAP3B1
NM_052913KIAA19131
NM_0011110391
NM_152736ZNF1871
NM_001023560ZNF1871
NM_198277SLC37A21
NM_013269CLEC2D1
NM_001004419CLEC2D1
NM_003576STK241
NM_001032296STK241
XM_934271LOC3882371
XM_001132813LOC7287411
XM_001132780LOC7287341
NM_022733SMAP1L1
NM_016427TCEB3B1
NM_145808MTPN1
NM_001013620ALG10B1
NM_014388C1orf1071
NM_001002860BTBD71
NM_002035FVT11
NM_152774MGC420901
NM_001014797KCNMA11
NM_004375COX111
NM_017769KIAA13331
NM_012145DTYMK1
XM_001126184LOC7277611
XM_001126211LOC7277611
XM_001126163LOC7277611
XM_001126193LOC7277611
NM_000460THPO1
XM_001128589LOC7311431
XM_001126462LOC7280661
NM_001040057MGC404051
NM_152789MGC404051
XM_001128002LOC7281531
XM_001128014LOC7281531
NM_000869HTR3A1
NM_213621HTR3A1
NM_014112TRPS11
NM_007271STK381
NM_024665TBL1XR11
NM_015975TAF9B1
XM_001126120LOC7281981
NM_004386NCAN1
NM_001025252TPD521
NM_001025253TPD521
NM_005079TPD521
NM_016569TBX31
NM_005996TBX31
NM_194286KIAA18531
NM_014824FCHSD21
NM_001001664LOC3397451
NM_002310LIFR1
NM_024086METT10D1
NM_005898CAPRIN11
NM_207352CYP4V21
NM_025054VCPIP11
NM_014309RBM91
NM_001082576RBM91
NM_001082577RBM91
NM_001031695RBM91
NM_001082578RBM91
NM_001082579RBM91
XM_934407LOC6471311
XM_945302LOC6522251
NM_019050USP531
NM_001005337PKP11
NM_000299PKP11
NM_020297ABCC91
NM_030979PABPC31
NM_002568PABPC11
NM_173650DNAJC5G1
NM_015049TRAK21
NM_052907TMEM132B1
NM_198990NAPE-PLD1
NM_152412ZNF5721
NM_176812CHMP4B1
NM_006504PTPRE1
NM_130435PTPRE1
NM_003913PRPF4B1
NM_018230NUP1331
NM_015039NMNAT21
NM_170706NMNAT21
NM_001463FRZB1
NM_000315PTH1
NM_002705PPL1
NM_031281FCRL51
NM_0178921
NM_001034853RPGR1
NM_016142HSD17B121
NM_004982KCNJ81
NM_014901RNF441
XM_001128547LOC6475001
NM_144642SYNPR1
XM_938374LOC6440101
NM_175921LOC2856361
NM_031431COG31
NM_017550MIER21
NM_005857ZMPSTE241
NM_152653UBE2E21
NM_001002254DGAT2L41
NM_005871SMNDC11
XM_001128291PARP81
XM_001133364LOC7295331
XM_001133363LOC7295331
XM_001133365LOC7295331
NM_0011009101
NM_207418FAM72A1
NM_020766PCDH191
NM_0011052431
NM_016032ZDHHC91
NM_001008222ZDHHC91
NM_000492CFTR1
NM_018492PBK1
NM_015326SRGAP21
NM_023071SPATS21
NM_022845CBFB1
NM_001755CBFB1
NM_005721ACTR31
NM_001034915RBM35A1
NM_001008537KIAA20221
XM_208043LOC2831161
NM_020358TRIM491
XM_926073LOC6531111
XM_379324LOC3401131
XM_943214LOC3401131
NM_016417GLRX51
NM_007331WHSC11
NM_016382CD2441
NM_004575POU4F21
NM_017651AHI11
NM_001039693FLJ379531
NM_015902EDD11
NM_001040275ESR21
NM_001040276ESR21
NM_001661ARL4D1
NM_152281SCYL1BP11
NM_016281TAOK31
NM_014548TMOD21
NM_003664AP3B11
NM_002737PRKCA1
NM_006154NEDD41
NM_198400NEDD41
NM_170606MLL31
NM_022073EGLN31
XM_945624LOC6494451
XM_933938LOC6438721
XM_001133695LOC7296871
XM_001133530LOC7317401
NM_005517HMGN21
XM_001132219LOC7286321
XM_001125913LOC7277951
NM_001081686G6PC21
NM_021176G6PC21
NM_024516C16orf531
NM_0010997331
NM_001117ADCYAP11
NM_001080412ZBTB381
XM_001133510ZBTB381
NM_018084KIAA12121
NM_153371LNX21
NM_024808C13orf341
NM_152417TMEM681
NM_198968DZIP11
NM_014934DZIP11
NM_201553FGL11
NM_004467FGL11
NM_201552FGL11
NM_147203FGL11
NM_145257C1orf961
NM_005962MXI11
NM_001008541MXI11
NM_130439MXI11
NM_018602DNAJA41
NM_002718PPP2R3A1
NM_181897PPP2R3A1
NM_016227C1orf91
NM_014283C1orf91
NM_006602TCFL51
NM_001037317PAP2D1
NM_001010861PAP2D1
NM_017549EPDR11
NM_002078GOLGA41
NM_000554CRX1
NM_024513FYCO11
NM_006777ZBTB331
NM_176081TRDMT11
NM_004412TRDMT11
NM_176083TRDMT11
NM_006306SMC1A1
NM_018469TEX21
NM_001029954ARMETL11
NM_003640IKBKAP1
NM_031939MRO1
NM_006974ZNF33A1
NM_006954ZNF33A1
NM_006955ZNF33B1
NM_003082SNAPC11
NM_003217TEGT1
NM_0010985761
NM_001005404YPEL21
NM_006708GLO11
NM_182603ANKRD421
NM_006729DIAPH21
NM_005467NAALAD21
NM_001009899KIAA20181
NM_022756C1orf1491
NM_014733ZFYVE161
NM_0011052511
NM_000028AGL1
NM_000646AGL1
NM_000645AGL1
NM_000644AGL1
NM_000642AGL1
NM_000643AGL1
NM_031246PSG21
NM_002781PSG51
NM_021016PSG31
NM_203287PSG111
NM_002785PSG111
NM_001037165FOXK11
NM_016206VGLL31
NM_138292ATM1
NM_000051ATM1
NM_181523PIK3R11
NM_181504PIK3R11
NM_181524PIK3R11
NM_018145FAM82C1
NM_007325GRIA31
NM_000828GRIA31
NM_153487MDGA11
NM_001003679LEPR1
NM_001969EIF51
NM_183004EIF51
NM_006352ZNF2381
NM_205768ZNF2381
NM_145698ACBD51
NM_001042473ACBD51
NM_001077426ZNF5861
NM_017652ZNF5861
NM_001356DDX3X1
NM_0247761
NM_022755IPPK1
NM_015525IBTK1
NM_003679KMO1
NM_007231SLC6A141
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
XM_001134463BAHCC11
NM_001080519BAHCC11
NM_000950PRRG11
NM_020850RANBP101
NM_001001342BLOC1S21
NM_173809BLOC1S21
NM_004090DUSP31
NM_001188BAK11
NM_021957GYS21
NM_0011045581
NM_024930ELOVL71
NM_194434VAPA1
NM_003574VAPA1
NM_030962SBF21
NM_024598C16orf571
NM_021931DHX351
NM_014910ZNF5071
NM_001007070SDCBP1
NM_001007067SDCBP1
NM_005625SDCBP1
NM_001007069SDCBP1
NM_001007068SDCBP1
NM_006918SC5DL1
NM_001024956SC5DL1
NM_032144RAB6C1
NM_198896RAB6A1
NM_002869RAB6A1
NM_001077637LOC1507861
NM_014828TOX41
NM_001816CEACAM81
NM_001037163MGC129661
NM_021961TEAD11
NM_133493CD1091
NM_183065TMEM1071
NM_032354TMEM1071
NM_152596EXDL11
NM_005073SLC15A11
NM_024779PIP5K2C1
NM_004748CCPG11
NM_020739CCPG11
NM_024817THSD41
NM_014797ZBTB241
NM_004487GOLGB11
NM_000235LIPA1
NM_003403YY11
NM_030641APOL61
NM_014418TCL61
NM_012468TCL61
NM_173510CCDC1171
NM_025146NAT131
NM_016129COPS41
NM_014783ARHGAP11A1
NM_207491MGC486281
NM_174916UBR11
NM_206853QKI1
NM_206854QKI1
NM_206855QKI1
NM_205852CLEC12B1
NM_138444KCTD121
NM_022041GAN1
NM_018223CHFR1
NM_001033910TRAF51
NM_145759TRAF51
NM_004619TRAF51
NM_013422ARHGAP61
NM_006125ARHGAP61

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
Motif found in sense strand

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317