Predicted Off-targets for siRNA "gcagacucacagaacuuca" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
Warning - siRNA is specific for only the antisense (guide) strand

25 hits were found for GCAGACUCACAGAACUUCA (16 guide strand hits and 9 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_032785 AGBL4 2785 2803 cCuGACUCACAGAACUUuc70 4 14 c false   <90%   3938
NM_002842 PTPRH 207 225 cuAGACUCACAGAACUcCA63 3 14 ac false   <90%   3895
NM_004654 USP9Y 7998 8016 GCAGACUCACAGAAuUcau44 4 14 c false   <90%   10048
NM_014811 KIAA0649 335 353 cugGACUCACAGAAuUUCA42 4 11 c false   <90%   4959
XR_016604 LOC391657 454 472 cugGACUCACAGAACcUCA40 4 12 c false   <90%   2106
XR_019613 LOC391657 454 472 cugGACUCACAGAACcUCA40 4 12 c false   <90%   2106
NM_005700 DPP3 624 642 cugGACUCACAGAACcUCA40 4 12 c false   <90%   2694
NM_130443 DPP3 627 645 cugGACUCACAGAACcUCA40 4 12 c false   <90%   2697
NM_178011 LRRTM3 1164 1182 uCAGACUCAaAGAACUUCA15 2 9 bc false   <90%   5609
NM_153620 HOXA1 389 407 uauGgCUCACAGAACUUCA15 4 14 bc false   <90%   2358
NM_005522 HOXA1 389 407 uauGgCUCACAGAACUUCA15 4 14 bc false   <90%   2561
NM_002842 PTPRH 474 492 cCAGACcCACAGAACUcCA8 3 9 c false   <90%   3895
NM_002842 PTPRH 1008 1026 cCAGACcCACAGAACUcCA8 3 9 c false   <90%   3895
XR_018081 LOC642074 561 579 GCAGACgCACAGAACcUCu2 3 8 c false   <90%   1207
NM_001018078 FPGS 1389 1407 GCAGACcaACAGAACUUCA-28 2 11 bc false   <90%   2475
NM_004957 FPGS 1401 1419 GCAGACcaACAGAACUUCA-28 2 11 bc false   <90%   2487


Hits to Sense strand










AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
XR_016349 LOC442459 460 478 UGAAGUUCUGUGgGUCUGu84 2 12   false   <90%   1855
XR_018440 LOC442459 460 478 UGAAGUUCUGUGgGUCUGu84 2 12   false   <90%   1855
XR_016467 LOC127086 308 326 UGAAGUgCUGUGAGUCUGu28 2 11 bc false   <90%   1696
XR_018426 LOC648627 308 326 UGAAGUgCUGUGAGUCUGu28 2 11 bc false   <90%   1696
NM_002468 MYD88 753 771 UGAAGUUgUGUGuGUCUGa22 3 7   false   <90%   2826
XR_018635 LOC387703 447 465 UGAAGUgCUGUGgGUCUGu18 3 6   false   <90%   1882
XR_016730 LOC387703 447 465 UGAAGUgCUGUGgGUCUGu18 3 6   false   <90%   1882
NM_001469 XRCC6 502 520 UGAAGUgCUGUGgGUCUGu18 3 6   false   <90%   2156
NM_177980 CDH26 1821 1839 UGgAGgUCUGUGAGUCUGC17 2 13 bc false   <90%   3192


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1508
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_177403RAB7B3
NM_014911AAK13
NM_001017440CALN13
NM_031468CALN13
NM_005828WDR683
NM_023089CAPN103
NM_001040628NCALD3
NM_001040626NCALD3
NM_001040625NCALD3
NM_032041NCALD3
NM_001040629NCALD3
NM_001040624NCALD3
NM_001040627NCALD3
NM_001040630NCALD3
NM_005596NFIB3
XM_001130364LOC7284173
XM_001130184LOC7308433
NM_001364DLG23
NM_0207003
NM_002055GFAP3
NM_001106ACVR2B3
NM_033393KIAA17272
NM_001014797KCNMA12
NM_145206VTI1A2
NM_001009959KIAA11892
NM_020711KIAA11892
NM_020689SLC24A32
NM_198480ZNF6152
NM_033331CDC14B2
NM_003671CDC14B2
NM_001077181CDC14B2
NM_032287LDOC1L2
NM_014000VCL2
NM_003373VCL2
NM_005207CRKL2
NM_021135RPS6KA22
NM_001006932RPS6KA22
NM_138368DKFZp761E1982
NM_020784KIAA13442
NM_016221DCTN42
NM_052910SLITRK12
NM_054111IHPK32
NM_020776KIAA13282
NM_000885ITGA42
XM_925815FLJ328102
XM_001127597FLJ328102
XM_001127587FLJ328102
XM_001127637FLJ328102
XM_001127623FLJ328102
NM_020839WDR482
NM_002655PLAG12
NM_003108SOX112
NM_032842FLJ148032
NM_017515SLC35F22
NM_016529ATP8A22
NM_012205HAAO2
NM_004127GPS12
NM_212492GPS12
NM_016617UFM12
NM_004132HABP22
NM_015654NAT92
NM_025219DNAJC52
NM_139057ADAMTS172
NM_052906LRRC622
NM_017705PAQR52
NM_0011045542
NM_023112OTUB22
NM_005096ZMYM32
NM_201599ZMYM32
XM_001128799MAP3K22
NM_181846ZSCAN222
NM_0011013872
NM_015554GLCE2
NM_015926TEX2642
NM_001264CDSN2
NM_021809TGIF22
NM_006464TGOLN22
NM_006116MAP3K7IP12
NM_004998MYO1E2
NM_173463DKFZp761B1072
NM_020909EPB41L52
NM_178122C1orf2012
NM_001008392CTDSPL2
NM_005808CTDSPL2
NM_018992KCTD52
NM_001004358FGFRL12
NM_021923FGFRL12
NM_001004356FGFRL12
XM_291671RBM202
XM_939337RBM202
NM_175066DDX512
NM_001007237IGSF32
NM_001542IGSF32
NM_006485FBLN12
NM_006999POLS2
NM_001010846SHE2
NM_003255TIMP22
XM_001132362TIMP22
NM_173483FLJ395012
NM_012096APPL12
NM_0153062
NM_015219EXOC72
NM_001013839EXOC72
NM_0010988162
NM_0010992872
NM_023080C8orf332
NM_022844MYH112
NM_001040113MYH112
NM_017958PLEKHB22
NM_0011006232
NM_004685MTMR62
NM_002737PRKCA2
NM_001077484SLC38A12
NM_030674SLC38A12
NM_015286DMN2
NM_145728DMN2
NM_000663ABAT2
NM_020686ABAT2
NM_015161ARL6IP12
NM_133265AMOT2
NM_014702KIAA04082
NM_001430EPAS12
NM_004660DDX3Y2
NM_000926PGR2
NM_002787PSMA22
NM_021964ZNF1482
NM_000844GRM71
NM_181874GRM71
NM_006868RAB311
NM_018246CCDC251
NM_001079526IKZF21
NM_016260IKZF21
NM_003980MAP71
NM_015272KIAA10051
NM_017650PPP1R9A1
NM_177939PH-41
NM_177938PH-41
NM_015935KIAA08591
NM_014955KIAA08591
NM_001007239KIAA08591
XM_001133171LOC7314771
NM_025134CHD91
NM_152292RG9MTD21
NM_003421ZNF37A1
NM_001007094ZNF37A1
NM_002025AFF21
XM_936273ZSWIM61
XM_035299ZSWIM61
NM_001012756ZNF2601
XM_001134020LOC7318651
NM_014293NPTXR1
NM_014141CNTNAP21
NM_021035ZNFX11
NM_024312GNPTAB1
NM_000343SLC5A11
NM_014629ARHGEF101
NM_199072MDFIC1
XM_001132906C6orf121
NM_015053PPFIA41
NM_001004341FLJ164781
NM_015062PPRC11
XM_498704LOC4404981
XM_938817LOC4404981
NM_032105PPP1R12B1
NM_002481PPP1R12B1
NM_152635OIT31
NM_001083620GRIA21
NM_000826GRIA21
NM_001083619GRIA21
NM_000397CYBB1
NM_203341SEP151
NM_004261SEP151
NM_004936CDKN2B1
NM_078487CDKN2B1
NM_016026RDH111
NM_032861SERAC11
NM_144684ZNF4801
NM_018960GNMT1
NM_022003FXYD61
NM_031301APH1B1
NM_015069ZNF4231
NM_004549NDUFC21
NM_001010891MTX31
NM_021130PPIA1
NM_019610RBMXL11
NM_001010883FAM102B1
NM_021830PEO11
NM_001448GPC41
NM_012249RHOQ1
NM_053055THEM41
NM_006505PVR1
NM_005985SNAI11
NM_021114SPINK21
NM_0011127171
NM_0011127201
NM_014988DKFZP686A012471
NM_0011127191
NM_0011127181
NM_0010985031
NM_001003665C1orf951
NM_003603SORBS21
NM_021069SORBS21
NM_033261IDI21
NM_001080439HSF51
XM_939614HSF51
NM_030660ATXN31
NM_004993ATXN31
NM_001094ACCN11
NM_183377ACCN11
NM_207577MAP61
NM_0011024021
NM_021213PCTP1
NM_020659TTYH11
NM_001005367TTYH11
NM_012429SEC14L21
NM_016413CPB21
NM_001872CPB21
NM_024989PGAP11
NM_0150361
NM_033027AXUD11
NM_001081573GAB31
NM_080612GAB31
NM_013411AK21
NM_006922SCN3A1
NM_001081677SCN3A1
NM_001081676SCN3A1
NM_003101SOAT11
NM_015886PI151
NM_0010986241
NM_033290MID11
NM_000381MID11
NM_014797ZBTB241
NM_000141FGFR21
NM_022970FGFR21
NM_004086COCH1
NM_005186CAPN11
NM_014155ZBTB441
NM_181783TMTC31
NM_182697UBE2H1
NM_003344UBE2H1
NM_001004317LIN28B1
NM_001077445PHF161
NM_014735PHF161
NM_001012339DNAJA51
NM_194283DNAJA51
XM_001124203LOC7302731
NM_182589HTR3E1
NM_144571CNOT6L1
NM_207121FAM110A1
NM_001042353FAM110A1
NM_031424FAM110A1
XM_943028LOC6477951
NM_002009FGF71
NM_001949E2F31
XM_001128626LOC7288521
XM_001131610LOC7320161
NM_207303ATRNL11
NM_006939SOS21
NM_002569FURIN1
NM_000806GABRA11
NM_133448TMEM132D1
NM_001002800SMC41
NM_005496SMC41
NM_006912RIT11
NM_003241TGM41
NM_058172ANTXR21
NM_001006114C21orf571
NM_001663ARF61
NM_002886RAP2B1
NM_001005337PKP11
NM_000299PKP11
NM_017645FAM29A1
NM_015087SPG201
XM_944029LOC6479791
NM_016132MYEF21
NM_054035UNC1191
NM_001080745DGKG1
NM_001346DGKG1
NM_001080744DGKG1
XM_929703LOC6467531
XM_939174LOC6500861
NM_153704TMEM671
NM_015056RRP1B1
NM_170665ATP2A21
NM_014906PPM1E1
NM_001002762DNAJB121
NM_015726WDR42A1
NM_024670SUV39H21
NM_003350UBE2V21
XM_942776SYNPO21
XM_936336SYNPO21
NM_133477SYNPO21
NM_001083617RB1CC11
NM_014781RB1CC11
NM_003822NR5A21
NM_205860NR5A21
NM_139071SMARCD11
NM_003076SMARCD11
NM_032486DCTN51
NM_019843EIF4ENIF11
NM_133493CD1091
NM_000121EPOR1
NM_022480KLHL251
NM_006732FOSB1
NM_019034RHOF1
NM_080922PTPRC1
NM_080921PTPRC1
NM_002838PTPRC1
NM_017863CXorf481
NM_001031705CXorf481
NM_145263SPATA181
NM_024872DOK31
NM_172169CAMK2G1
NM_001222CAMK2G1
NM_172173CAMK2G1
NM_172171CAMK2G1
NM_172170CAMK2G1
NM_000481AMT1
NM_030576LIMD21
NM_001116ADCY91
NM_024718C9orf861
NM_014494TNRC6A1
NM_033051SLC46A21
NM_000259MYO5A1
NM_033449FCHSD11
NM_015254KIF13B1
NM_000208INSR1
NM_001079817INSR1
NM_176824BBS71
NM_007283MGLL1
NM_001003794MGLL1
NM_153217TMEM1741
NM_014774KIAA04941
NM_139008HFE1
NM_139003HFE1
NM_139010HFE1
NM_139011HFE1
NM_139009HFE1
NM_000410HFE1
NM_139004HFE1
NM_139007HFE1
NM_139006HFE1
NM_000390CHM1
NM_173647RNF1491
NM_020647JPH11
NM_001075098MOCS11
NM_005943MOCS11
NM_001042371LOC2838711
NM_014063DBNL1
NM_001014436DBNL1
NM_006675TSPAN91
NM_001901CTGF1
NM_016169SUFU1
NM_004093EFNB21
NM_144671FAM109A1
NM_138499PWWP21
NM_0010986371
NM_207325DPY19L31
NM_170774RASSF21
NM_014737RASSF21
NM_153364FAM71C1
NM_000512GALNS1
NM_198545C1orf1871
NM_000117EMD1
NM_002738PRKCB11
NM_006852TLK21
NM_0011127071
NM_182580CYB561D11
NM_001452FOXF21
NM_030636KIAA17061
NM_021012KCNJ121
NM_145115ZNF4981
NM_001009909LUZP21
NM_003234TFRC1
NM_022912REEP11
NM_015157PHLDB11
NM_004275TRFP1
NM_000021PSEN11
NM_033343LHX41
NM_004921CLCA31
NM_152374FLJ389841
NM_015327SMG51
NM_006374STK251
NM_016173HEMK11
NM_019845RPRM1
NM_199427ZFP641
NM_173598KSR21
NM_020240CDC42SE21
NM_001038702CDC42SE21
NM_002312LIG41
NM_0010982681
NM_206937LIG41
NM_152906C22orf251
NM_005400PRKCE1
NM_014253ODZ11
NM_014787DNAJC61
NM_006238PPARD1
NM_021203SRPRB1
NM_001080978LILRB21
NM_005874LILRB21
NM_015557CHD51
NM_207361FREM21
NM_013248NXT11
NM_0155661
NM_175571GIMAP81
NM_004451ESRRA1
NM_024119LGP21
NM_022048CSNK1G11
NM_006257PRKCQ1
NM_004852ONECUT21
NM_018085IPO91
NM_017551GRID11
NM_000332ATXN11
NM_0011031611
NM_0011031601
NM_000159GCDH1
NM_013976GCDH1
NM_004514FOXK21
XM_001134363FOXK21
XM_001134364FOXK21
NM_170740ALDH5A11
NM_001080ALDH5A11
NM_015833ADARB11
NM_001033049ADARB11
NM_001112ADARB11
NM_199169TMEPAI1
NM_199170TMEPAI1
NM_199171TMEPAI1
NM_020182TMEPAI1
NM_003008SEMG21
NM_0011016761
NM_018028SAMD4B1
NM_005529HSPG21
NM_021902FXYD11
NM_005031FXYD11
NM_017952PTCD31
NM_000226KRT91
NM_0149871
NM_007014WWP21
NM_199424WWP21
NM_198139SEMG11
NM_003007SEMG11
NM_152722HEPACAM1
NM_015063SLC8A21
NM_006076HRBL1
NM_0010986381
NM_004269CRSP81
NM_001040659TTC231
NM_001040656TTC231
NM_001040658TTC231
NM_022905TTC231
NM_001040657TTC231
NM_001040655TTC231
NM_001040660TTC231
NM_003369UVRAG1
NM_006223PIN41
NM_020452ATP8B21
NM_003060SLC22A51
NM_015267CUTL21
NM_020761KIAA13031
NM_000722CACNA2D11
NM_014352POU2F31
NM_002268KPNA41
NM_0010992781
NM_032667BSCL21
NM_000859HMGCR1
NM_017730QRICH11
NM_198880QRICH11
NM_182558C12orf361
NM_003382VIPR21
NM_153331KCTD61
NM_016135ETV71
NM_003298NR2C21
NM_152769C19orf261
NM_206819MYBPC11
NM_206820MYBPC11
NM_002465MYBPC11
NM_206821MYBPC11
NM_015440MTHFD1L1
NM_014468VENTX1
NM_002430MN11
NM_024017HOXB91
NM_013276CARKL1
NM_080683PTPN131
NM_006264PTPN131
NM_080684PTPN131
NM_080685PTPN131
NM_015330SPECC1L1
NM_031475ESPN1
NM_017554PARP141
NM_020844KIAA14561
NM_0010996771
NM_001584MPPED21
NM_015289VPS391
NM_145231C14orf1431
NM_006221PIN11
NM_032432ABLIM21
NM_024052C17orf391
NM_138414CCDC1011
NM_022764MTHFSD1
NM_032818C9orf1001
NM_206933USH2A1
NM_017703FBXL121
NM_006161NEUROG11
XM_037557KIAA09841
XM_939476KIAA09841
NM_144975SLFN51
NM_080863ASB161
NM_005806OLIG21
NM_007322RANBP31
NM_003624RANBP31
NM_007320RANBP31
NM_002204ITGA31
NM_213720C22orf161
XM_373030LOC2855561
NM_004028AQP41
NM_001650AQP41
NM_001083909GPR1231
NM_016424CROP1
NM_020546ADCY21
NM_020975RET1
NM_015517MIZF1
NM_198971MIZF1
NM_024749VASH21
NM_005909MAP1B1
NM_001080556WDR161
NM_145054WDR161
NM_019098CNGB31
NM_014667VGLL41
NM_004434EML11
NM_001008707EML11
NM_199423WWP21
XM_001134463BAHCC11
NM_001080519BAHCC11
NM_000221KHK1
NM_006488KHK1
NM_138412RDH131
NM_015434INTS71
NM_024817THSD41
NM_004734DCLK11
NM_031417MARK41
XM_379273FLJ141861
NM_001003940BMF1
NM_001003943BMF1
NM_001003942BMF1
NM_033503BMF1
NM_176677FLJ362081
NM_004930CAPZB1
NM_002360MAFK1
NM_153347TMEM86A1
NM_001005404YPEL21
NM_014655SLC25A441
NM_0175611
NM_003644GAS71
NM_201432GAS71
NM_201433GAS71
NM_198446C1orf1221
NM_133443GPT21
NM_004237TRIP131
NM_022367SEMA4A1
NM_018660ZNF3951
NM_001017924LRRC221
NM_194317LYPD61
NM_017953C1orf1811
NM_020435GJA121
NM_182526C14orf831
XM_496960FAM90A11P1
NM_032051PATZ11
NM_178006STARD131
NM_178007STARD131
NM_052851STARD131
NM_018207TRIM621
NM_017982SUSD41
NM_153717EVC1
NM_001558IL10RA1
NM_145278C1orf1501
NM_024076KCTD151
NM_206818OSCAR1
NM_001360DHCR71
NM_014732KIAA05131
NM_004321KIF1A1
NM_001042SLC2A41
NM_173542LOC1964631
NM_031910C1QTNF61
NM_182486C1QTNF61
NM_017583TRIM441
NM_001235SERPINH11
XM_939505LOC2855561
NM_018088FAM90A11
XM_372013FAM90A31
XM_928665LOC6456511
XM_496946LOC4413141
NM_015001SPEN1
NM_001463FRZB1
NM_032302C7orf481
NM_025160WDR261
NM_002645PIK3C2A1
NM_005108XYLB1
NM_153812PHF131
NM_133264WIPF21
XM_001127094LOC7307551
XM_001127070LOC7282851
XM_001128836LOC7289341
NM_007050PTPRT1
NM_133170PTPRT1
NM_018280C22orf261
NM_0011024701
NM_001039802CDC421
NM_001791CDC421
XM_001132972LOC7291871
XM_001132549LOC7311801
NM_001009993LOC1300741
NM_021643TRIB21
NM_021945C6orf851
NM_016048ISOC11
NM_012406PRDM41
NM_058191C21orf661
NM_020386HRASLS1
NM_003474ADAM121
NM_020740ANKFY11
NM_003713PPAP2B1
NM_177414PPAP2B1
XM_001133581LOC7295401
NM_0011006211
NM_017941C17orf801
NM_172060EYA11
NM_000503EYA11
NM_172058EYA11
NM_172059EYA11
NM_022776OSBPL111
NM_021705NFYA1
NM_002505NFYA1
NM_019089HES21
NM_003818CDS21
NM_052960RBP71
NM_001903CTNNA11
NM_152393KBTBD51
NM_176081TRDMT11
NM_004412TRDMT11
NM_176083TRDMT11
NM_006676USP201
NM_0011103031
NM_001008563USP201
NM_173535CLEC4F1
NM_003559PIP5K2B1
NM_032786ZC3H101
NM_004294MTRF11
NM_013438UBQLN11
NM_001042574CRTC31
NM_022769CRTC31
NM_004311ARL31
NM_020159SMARCAD11
NM_006106YAP11
NM_020309SLC17A71
XM_942952FLJ462841
XM_499123FLJ462841
NM_025010KLHL181
NM_000966RARG1
NM_001042728RARG1
NM_014820TOMM70A1
NM_199188LARP41
NM_052879LARP41
NM_199190LARP41
NM_003325HIRA1
NM_004309ARHGDIA1
NM_001031746C10orf721
NM_009586SIM21
NM_0011014041
NM_172373ELF11
NM_153046TDRD91
XM_932732LOC6452061
NM_002730PRKACA1
NM_207518PRKACA1
NM_031459SESN21
NM_005779LHFPL21
NM_207372SH2D4B1
NM_018023YEATS21
NM_001003652SMAD21
NM_005901SMAD21
NM_005434MALL1
NM_153259MCOLN21
NM_022341PDF1
NM_032382COG81
NM_024511C4orf151
NM_005247FGF31
NM_145058MGC70361
NM_001080437SNED11
XM_940984SNED11
NM_001410MEGF81
NM_006809TOMM341
XM_001133364LOC7295331
XM_001133363LOC7295331
XM_001133365LOC7295331
NM_0011009101
NM_207418FAM72A1
NM_004588SCN2B1
NM_001273CHD41
NM_020871LRCH21
NM_173469UBE2Q21
NM_004157PRKAR2A1
NM_005658TRAF11
XM_001125098LOC7304171
NM_017712PGPEP11
NM_174953ATP2A31
NM_174956ATP2A31
NM_174954ATP2A31
NM_174957ATP2A31
NM_174958ATP2A31
NM_005173ATP2A31
NM_174955ATP2A31
NM_198076FAM36A1
NM_005177ATP6V0A11
NM_014644PDE4DIP1
XM_001126245LOC7278931
XM_001126231LOC7278931
NM_139012MAPK141
NM_139014MAPK141
NM_001315MAPK141
NM_000388CASR1
NM_003112SP41
NM_021045ZNF2481
NM_016096ZNF7061
NM_001042511ZNF7061
NM_001042510ZNF7061
NM_003012SFRP11
NM_022351EFCBP11
NM_001128AP1G11
NM_001030007AP1G11
NM_001412EIF1AX1
NM_033150COL2A11
NM_001844COL2A11
NM_0010987901
NM_021242MID1IP11
NM_0010987911
XM_168053C6orf1841
XM_939850LOC6507691
NM_002121HLA-DPB11
NM_152624DCP21
NM_173632ZNF7761
NM_006887ZFP36L21
NM_005869SDCCAG101
NM_198460GBP61
NM_004914RAB361
NM_033127LZTR21
NM_177965C8orf371
NM_014939KIAA10121
NM_001109ADAM81
NM_025164KIAA09991
NM_025078PQLC11
NM_001076778FAM107A1
NM_007177FAM107A1
NM_001319CSNK1G21
NM_001001480KRTAP5-51
NM_015340LARS21
XM_001129334PARD6G1
NM_032510PARD6G1
NM_018084KIAA12121
NM_003575ZNF2821
XM_001131520LOC7318631
NM_004522KIF5C1
NM_016121KCTD31
NM_207168ENSA1
NM_014646LPIN21
NM_001079514UBN11
NM_016936UBN11
NM_207454FLJ448151
NM_002501NFIX1
NM_001080398KIAA03681
XM_001131778KIAA03681
NM_001014839NCDN1
NM_014284NCDN1
NM_001014841NCDN1
NM_012279ZNF3461
NM_020438DOLPP11
NM_020440PTGFRN1
NM_005282GPR41
NM_0251851
NM_002868RAB5B1
NM_000851GSTM51
NM_003156STIM11
NM_002078GOLGA41
NM_018670MESP11
NM_014408TRAPPC31
NM_001024227ARF11
NM_001658ARF11
NM_001024228ARF11
NM_001024226ARF11
NM_023931ZNF7471
NM_206826GNL31
NM_206825GNL31
NM_014366GNL31
NM_006038SPATA21
NM_198081SCML41
NM_003363USP41
NM_199443USP41
NM_175068KRT731
NM_025227BPIL11
NM_014311SMUG11
XM_928464LOC1465171
NM_0314131
NM_152434CWF19L21
NM_012396PHLDA31
NM_033505SELI1
NM_012309SHANK21
NM_203395IYD1
NM_130398EXO11
NM_006027EXO11
NM_003686EXO11
NM_014562OTX11
NM_021079NMT11
NM_0207801
NM_020211RGMA1
NM_172239REXO1L11
NM_024821CCDC1341
NM_001029939ZFAT11
NM_020168PAK61
NM_181510WFDC81
NM_020133AGPAT41
NM_017921NPLOC41
NM_016063HDDC21
NM_006640SEPT91
NM_153273IHPK11
NM_001006115IHPK11
NM_002006FGF21
NM_003620PPM1D1
NM_007028TRIM311
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_0010996401
NM_018286TMEM1001
NM_198153TREML41
NM_005797EVA11
NM_004279PMPCB1
NM_024677NSUN71
NM_017662TRPM61
NM_057160ARTN1
NM_003976ARTN1
NM_057091ARTN1
NM_057090ARTN1
NM_006890CEACAM71
NM_007005TLE41
NM_182487OLFML2A1
NM_003281TNNI11
NM_130446KLHL61
XM_934205LOC6470381
XM_945296LOC6522201
NM_032977CASP101
NM_001230CASP101
NM_017728TMEM1041
NM_002924RGS71
NM_178129P2RY81
NM_153701IL12RB11
NM_138417KTI121
NM_002702POU6F11
NM_000617SLC11A21
NM_182485CPEB21
NM_182646CPEB21
NM_000243MEFV1
NM_002607PDGFA1
NM_033023PDGFA1
NM_033419PERLD11
NM_139280ORMDL31
NM_002271RANBP51
NM_014935PLEKHA61
XM_933796SLC45A41
NM_000065C61
NM_016346NR2E31
NM_002499NEO11
NM_007189ABCF21
NM_014665LRRC141
NM_006555YKT61
NM_153832GPR1611
NM_033518SLC38A51
NM_0011107811
NM_001051SSTR31
NM_001017961FAM78B1
NM_000675ADORA2A1
NM_004390CTSH1
NM_148979CTSH1
NM_001299CNN11
NM_199459C10orf711
NM_175733SYT91
NM_016356DCDC21
NM_0153511
NM_000720CACNA1D1
NM_003709KLF71
NM_024896KIAA18151
NM_007033RER11
NM_022899ACTR81
XM_932965LOC6455531
XM_945010LOC6455531
NM_0011055371
NM_005081ZNF1421
NM_015077SARM11
NM_015078MCF2L21
NM_018486HDAC81
NM_000901NR3C21
NM_003941WASL1
NM_014587SOX81
NM_144675GSG1L1
NM_0011097631
NM_001004320FLJ162371
NM_021128POLR2L1
NM_016606REEP21
NM_018664SNFT1
XM_001131744LOC7320601
XM_001126476LOC7280731
NM_017758ALKBH51
NM_015082FSTL41
NM_001040273TYSND11
NM_173555TYSND11
NM_152456C16orf771
NM_032795RPUSD41
NM_005376MYCL11
NM_007249KLF121
NM_024915GRHL21
NM_152793C7orf411
NM_015124DIP1
NM_001029885MGC103341
NM_052876BTBD14B1
NM_198490RAB431
NM_001081755ELN1
NM_001081754ELN1
NM_001081752ELN1
NM_000501ELN1
NM_001081753ELN1
NM_004560ROR21
XM_378661C17orf511
XM_944416C17orf511
NM_020336KIAA12191
NM_001083625ANKRD121
NM_015208ANKRD121
NM_130847AMOTL11
NM_174976ZDHHC221
NM_021190PTBP21
NM_182972IRF2BP21
NM_001077397IRF2BP21
NM_015215CAMTA11
NM_181712ANKRD381
NM_004339PTTG1IP1
NM_173660DOK71
NM_031215CABLES21
NM_145687MAP4K41
NM_145686MAP4K41
NM_004834MAP4K41
NM_002234KCNA51
NM_198256E2F61
XM_941026ING51
XM_001126273LOC7277731
NM_032329ING51
NM_017755NSUN21
NM_018189DPPA41
NM_005975PTK61
NM_022842CDCP11
NM_002998SDC21
NM_017415KLHL31
NM_005439MLF21
NM_016545IER51
NM_021960MCL11
NM_182763MCL11
NM_016269LEF11
NM_001530HIF1A1
NM_181054HIF1A1
NM_003272GPR137B1
NM_017588WDR51
NM_052821WDR51
NM_207491MGC486281
NM_0010996781
NM_002474MYH111
NM_001040114MYH111
NM_016575NT5DC31
NM_024713C15orf291
NM_021927GUF11
NM_199324OTUD41
NM_0011026531
NM_001026213CYP11B11
NM_000497CYP11B11
NM_002901RCN11
NM_003396WNT9B1
NM_152356ZNF4911
NM_001039709CBFA2T21
NM_001032999CBFA2T21
NM_005093CBFA2T21
NM_0209111
NM_0011026081
NM_000418IL4R1
XM_001133370LOC7313361
XM_001134093LOC7298791
NM_001079812DIAPH11
NM_005219DIAPH11
NM_002299LCT1
NM_003924PHOX2B1
NM_005920MEF2D1
NM_178493NOTUM1
NM_004431EPHA21
NM_014421DKK21
NM_213566DFFA1
NM_001083621ZBTB401
NM_014870ZBTB401
NM_024627C22orf291
NM_014910ZNF5071
XM_001129047LOC7290061
XM_001130833LOC7317951
NM_032015RNF261
NM_173653SLC9A91
NM_015353KCTD21
NM_0011004251
NM_015314KIAA08951
XM_930103LOC6449741
XM_941316LOC6495911
XM_209597LOC2854071
XM_939967LOC2854071
XM_001133099LOC3398791
XM_291054LOC3398791
NM_016272TOB21
XM_001133534ATP1B31
XM_001133533ATP1B31
NM_001679ATP1B31
NM_177967UBAC21
NM_006005WFS11
NM_001005176SP1401
NM_0010986721
NM_030634ZNF4361
NM_001077195ZNF4361
NM_020437ASPHD21
NM_003851CREG11
NM_004513IL161
NM_172217IL161
NM_003189TAL11
NM_018298MCOLN31
NM_019117KLHL41
XM_001132813LOC7287411
XM_001132780LOC7287341
XM_934271LOC3882371
NM_002460IRF41
NM_018490LGR41
NM_022784IQCH1
NM_053024PFN21
NM_015635GAPVD11
NM_033056PCDH151
NM_004985KRAS1
NM_033360KRAS1
NM_024295DERL11
NM_183048ZMYND81
NM_183047ZMYND81
NM_012408ZMYND81
NM_016654GABPB21
NM_005254GABPB21
NM_0208461
NM_181458PAX31
NM_181460PAX31
NM_181457PAX31
NM_181459PAX31
NM_022650RASA11
NM_002890RASA11
NM_0010996661
NM_005868BET11
NM_198849LOC2835141
NM_005291GPR171
NM_022106C20orf1771
NM_003442ZNF1431
NM_033224PURB1
NM_001040665STEAP21
NM_152999STEAP21
NM_005512LRRC321
NM_025195TRIB11
NM_018427RRN31
NM_017637BNC21
NM_020961KIAA16271
NM_138459NUS11
XM_001128301LOC7280561
NM_152407GRPEL21
NM_020813ZNF4711
NM_032439PHYHIPL1
NM_001037163MGC129661
NM_003262TLOC11
NM_017824MARCH51
NM_138381OXNAD11
NM_024523GCC11
NM_173491LSM111
NM_0011112831
NM_000618IGF11
NM_0011112841
NM_022343C9orf191
NM_080743SRrp351
NM_0151231
NM_178229IQGAP31
NM_006080SEMA3A1
NM_0010985041
NM_030881DDX171
NM_0010985051
NM_006386DDX171
NM_173362RFESD1
NM_015011MYO161
NM_198586NHLRC11
NM_033550TP53RK1
NM_016467ORMDL11
XM_001134215PDPR1
NM_017990PDPR1
NM_152787MAP3K7IP31
NM_003470USP71
NM_130385MRVI11
NM_0011001631
NM_0010985791
NM_0011001671
NM_006955ZNF33B1
NM_013250ZNF2151
NM_018479ECHDC11
NM_0010020301
NM_0011055441
NM_0011055451
NM_022062PKNOX21
NM_015226KIAA03501
NM_182635C9orf1641
NM_021026RFPL11
NM_002431MNAT11
NM_018566YOD11
NM_014883FAM13A11
NM_001015045FAM13A11
NM_016073HDGFRP31
NM_015200SCC-1121
NM_0011003991
XM_001131943LOC7299791
XM_001128763LOC7311881
NM_0010994551
NM_018340FLJ111511
NM_024785FAM124B1
NM_002265KPNB11
NM_022166XYLT11
XM_001125986LOC2838241
NM_145739OSBPL61
NM_032523OSBPL61
NM_006336ZER11
NM_001012751ABI11
NM_001012750ABI11
NM_001012752ABI11
NM_005470ABI11
XM_001132326LOC7322321
XM_001130017LOC7293521
NM_005769CHST41
NM_006241PPP1R21
NM_001033723ZNF7041
NM_001033518WIPI21
NM_001033519WIPI21
NM_015610WIPI21
NM_001033520WIPI21
NM_016003WIPI21
NM_003743NCOA11
NM_147233NCOA11
NM_147223NCOA11
NM_198240CLIP11
NM_002956CLIP11
NM_018303EXOC21
NM_014631SH3PXD2A1
NM_001018065NTRK21
NM_001018066NTRK21
NM_020866KLHL11
NM_004862LITAF1
NM_021813BACH21
NM_001789CDC25A1
NM_201567CDC25A1
NM_205855UNQ19401
NM_020964KIAA16321
NM_015257KIAA02861
NM_145012CCNY1
NM_181698CCNY1
NM_006873STON11
NM_015101GLT25D21
NM_025113C13orf181
NM_0011003881
NM_207430FLJ462661
NM_214677CLEC4M1
NM_012304FBXL71
NM_198595AFAP11
NM_021638AFAP11
XM_001126978LOC7307311
XM_001127265LOC7283471
NM_182925FLT41
NM_052813CARD91
NM_012294RAPGEF51
NM_080682VCAM11
NM_001078VCAM11
NM_001001549GRB101
NM_001001555GRB101
NM_001001550GRB101
NM_005311GRB101
NM_022473ZFP1061
NM_001039659IL18BP1
NM_001039660IL18BP1
NM_173042IL18BP1
NM_021216ZNF711
NM_173814PRTG1
NM_017540GALNT101
NM_198321GALNT101
NM_199450ZNF3651
NM_053023ZFP911
NM_000593TAP11
NM_000631NCF41
NM_013416NCF41
NM_001040102TMEM101
NM_033207TMEM101
NM_001040103TMEM101
NM_032181TMEM1661
NM_177401MIDN1
NM_005110GFPT21
NM_178815ARL5B1
NM_020673RAB22A1
NM_001233CAV21
NM_198212CAV21
NM_178136POLDIP31
NM_032311POLDIP31
XM_001129572LOC4401321
XM_498560LOC4401321
NM_001013620ALG10B1
NM_0010839631
NM_0010839641
NM_0010839651
XM_001125734LOC7277811
XM_001125756LOC7277881
NM_002808PSMD21
NM_015423AASDHPPT1
NM_016436PHF201
NM_020657ZNF3041
NM_017438SETD41
NM_1736011
NM_0010996501
NM_012330MYST41
NM_001163APBA11
NM_182913SYNE21
NM_015180SYNE21
NM_182910SYNE21
NM_182914SYNE21
XM_941162LOC4009501
XM_376049LOC4009501
NM_006933SLC5A31
NM_020655JPH31
NM_006253PRKAB11
NM_178509STXBP41
NM_130834OPA11
NM_015560OPA11
NM_130836OPA11
NM_130831OPA11
NM_130832OPA11
NM_130837OPA11
NM_130833OPA11
NM_130835OPA11
NM_004836EIF2AK31
NM_176894P2RY131
NM_023914P2RY131
NM_016639TNFRSF12A1
NM_017596KIF21B1
XM_001130020KIAA11471
XM_001130081KIAA11471
NM_001080392KIAA11471
NM_020697KCNS21
NM_005503APBA21
NM_020422TMEM1591
NM_005491CXorf61
NM_013372GREM11
NM_001042493C6orf1621
NM_020425C6orf1621
NM_002075GNB31
NM_007042RPP141
NM_0010987831
NM_022063C10orf841
NM_001033081MYCL11
NM_001033082MYCL11
NM_001003682TTMB1
NM_0011102131
NM_005042PRH21
NM_182688UBE2G21
NM_003343UBE2G21
NM_173497HECTD21
NM_018000MREG1
NM_001007139IGF21
NM_000612IGF21
NM_000849GSTM31
NM_016258YTHDF21
NM_018332DDX19A1
NM_022746MOSC11
NM_001465FYB1
NM_199335FYB1
NM_005683GPR551
XM_927661LOC6445381
XM_939025LOC6445381
XM_001127274SMYD21
NM_032296FLYWCH11
NM_001017995SH3PXD2B1
NM_005933MLL1
NM_153442GPR261
NM_006767LZTR11
NM_017548CDV31
NM_018361AGPAT51
NM_017736THUMPD11
NM_000286PEX121
XM_001126151LOC7278581
XM_001130844LOC7287641
NM_006646WASF31
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_024298LENG41
NM_001006623WDR331
NM_001080530LOC920171
NM_021116ADCY11
NM_0010988131
NM_0151461
NM_0010988121
NM_001001683MED111
NM_181876PPP2R2C1
NM_020416PPP2R2C1
NM_001024843TNRC6B1
NM_015088TNRC6B1
NM_003913PRPF4B1
NM_024860SETD61
NM_024963FBXL181
NM_003596TPST11
NM_004863SPTLC21
NM_004773ZNHIT31
NM_018090NECAP21
XM_944835LOC6486911
NM_003992CLK31
NM_001292CLK31
NM_0010992941
XM_936510KIAA16441
NM_017944USP471
NM_033011PLAT1
NM_000930PLAT1
XM_945536LOC4009601
XM_934552LOC4009601
NM_015955MEMO11
XM_001133737LOC7317451
XM_001129672LOC7285561
NM_017629EIF2C41
NM_003578SOAT21
NM_006918SC5DL1
NM_001024956SC5DL1
NM_013281FLRT31
NM_198391FLRT31
NM_080737SYTL41
NM_014734KIAA02471
NM_152740HIBADH1
NM_006520DYNLT31
NM_152901PYDC11
NM_003921BCL101
NM_002635SLC25A31
NM_005888SLC25A31
NM_213611SLC25A31
NM_025015HSPA12A1
NM_001002269EXOSC31
NM_015948SLC35B31
NM_005399PRKAB21
NM_006628ARPP-191
NM_001010862SPIN31
NM_002662PLD11
NM_183043RNF61
NM_183044RNF61
NM_005977RNF61
NM_0333901
NM_183413FBXO441
NM_033182FBXO441
NM_001014765FBXO441
NM_183412FBXO441
NM_025154UNC84A1
NM_004273CHST31
NM_133374ZNF6181
NM_178468FAM83C1
NM_020728FAM62B1
NM_015072TTLL51
NM_020122KCMF11
NM_207359GADL11
NM_018834MATR31
NM_199189MATR31
NM_0010988191
NM_0010988181
NM_000923PDE4C1
XM_001128884LOC7312271
NM_001024649CANX1
NM_001746CANX1
NM_138479C1orf2131
NM_004510SP1101
NM_024567HMBOX11
NM_005722ACTR21
NM_001005386ACTR21
XM_944031LOC6442481
XM_932073LOC6442481
NM_144967FLJ300581
NM_004788UBE4A1
XM_001128468NSF1
NM_006178NSF1
NM_001008408RBM331
NM_053043PRR81
NM_031309SCRT11
NM_001005473PLCXD31
NM_033105DNAJC5B1
NM_033364C3orf151
NM_145813AIFM11
NM_145812AIFM11
NM_004208AIFM11
NM_004870MPDU11
NM_001037293PALM21
NM_053016PALM21
NM_0010985091
NM_014853RUTBC11
NM_178831GATS1
NM_015913TXNDC121
NM_006850IL241
NM_181339IL241
NM_015879ST8SIA31
NM_032682FOXP11
NM_001008393LOC2017251
NM_014786ARHGEF171
NM_020431TMEM63C1
NM_019118C1orf911
NM_024770METTL81
NM_012257HBP11
XM_934166LOC6534411
XM_945184LOC6534411
NM_004426PHC11
NM_032947MST1501
NM_014826CDC42BPA1
NM_003607CDC42BPA1
NM_002166ID21
NM_016277RAB231
NM_183227RAB231
NM_020921NIN1
NM_201525GPR561
NM_201524GPR561
NM_005682GPR561
NM_012193FZD41
NM_020782KLHDC51
NM_018683ZNF3131
NM_001031681CTNS1
NM_004937CTNS1
XM_942458LOC2833981
XM_208658LOC2833981
NM_003848SUCLG21
NM_032373PCGF51
NM_001018108SERF21
NM_153825SLA/LP1
NM_182524ZNF5951
NM_003482MLL21
NM_014677RIMS21
NM_0011001171
NM_006587CORIN1
NM_001042413GLIS31
NM_152629GLIS31
NM_144963FAM91A11
NM_020353PLSCR41
NM_001025108AFF31
NM_002285AFF31
NM_152545RASGEF1B1
NM_198151LOC2530121
NM_001039372LOC2530121
XM_001129792LOC7291481
NM_000266NDP1
NM_006693CPSF41
NM_001081559CPSF41
NM_020120UGCGL11
NM_001025777UGCGL11
NM_014822SEC24D1
NM_015471NSL11
NM_001042549NSL11
NM_014394GHITM1
NM_007038ADAMTS51
NM_052862RCSD11
NM_148170CTSC1
NM_005242F2RL11
NM_004878PTGES1
NM_002154HSPA41
NM_001259CDK61
NM_153029N4BP11
NM_006823PKIA1
NM_181839PKIA1
NM_171982TRIM351
NM_138426GLCCI11
NM_001012979TCEAL51
NM_001040424PRDM151
NM_183075CYP2U11
NM_014848SV2B1
NM_014926SLITRK31
NM_014326DAPK21
NM_007046EMILIN11
NM_152701ABCA131
NM_014707HDAC91
NM_001816CEACAM81
NM_001001396ATP2B41
NM_001684ATP2B41
NM_004267CHST21
NM_018370DRAM1
NM_020854KIAA14681
NM_182515ZNF7141
NM_001042631LOC6440961
XM_941105LOC1525731
NM_001080505LOC1525731
NM_182548LHFPL51
NM_018184ARL8B1
NM_152429FGFBP31
NM_058206SPAG11B1
NM_016512SPAG11B1
NM_001007246BRWD11
NM_030882APOL21
NM_145637APOL21
NM_153681PIGP1
NM_153682PIGP1

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317