Automatic recommendation
Warning - siRNA is specific for only the antisense (guide) strand
131 hits were found for GGAUGAAGAAGAUGGCCAU (73 guide strand hits and 58 sense strand hits.)
Hits to Guide strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
NM_005494 | DNAJB6 | 806 | 824 | a | G | u | U | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 73 | 3 | 15 | bc | false | <90% | 1568 | ||
XR_019393 | LOC387820 | 828 | 846 | a | G | u | U | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 73 | 3 | 15 | bc | false | <90% | 1586 | ||
XR_017453 | LOC387820 | 828 | 846 | a | G | u | U | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 73 | 3 | 15 | bc | false | <90% | 1590 | ||
NM_058246 | DNAJB6 | 805 | 823 | a | G | u | U | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 73 | 3 | 15 | bc | false | <90% | 2494 | ||
NM_198941 | SERINC3 | 1283 | 1301 | u | G | A | U | G | A | A | G | A | A | G | A | U | G | G | a | C | A | g | 66 | 3 | 14 | c | false | <90% | 1744 | ||
NM_006811 | SERINC3 | 1283 | 1301 | u | G | A | U | G | A | A | G | A | A | G | A | U | G | G | a | C | A | g | 66 | 3 | 14 | c | false | <90% | 2592 | ||
NM_012454 | TIAM2 | 2163 | 2181 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | C | a | g | a | 66 | 4 | 15 | ac | false | <90% | 5916 | ||
NM_000448 | RAG1 | 909 | 927 | u | c | A | U | G | A | A | G | A | A | G | A | U | c | G | C | C | A | a | 62 | 4 | 11 | c | false | <90% | 6557 | ||
NM_177399 | LMX1A | 242 | 260 | a | G | A | U | G | A | A | G | A | A | G | c | U | G | G | C | C | A | g | 59 | 3 | 10 | false | <90% | 2657 | |||
NM_001033507 | LMX1A | 242 | 260 | a | G | A | U | G | A | A | G | A | A | G | c | U | G | G | C | C | A | g | 59 | 3 | 10 | false | <90% | 2790 | |||
NM_177398 | LMX1A | 967 | 985 | a | G | A | U | G | A | A | G | A | A | G | c | U | G | G | C | C | A | g | 59 | 3 | 10 | false | <90% | 3382 | |||
NM_001499 | GLE1L | 1131 | 1149 | G | G | A | U | G | A | A | G | A | A | G | A | g | G | c | C | C | A | g | 59 | 3 | 12 | false | <90% | 2266 | |||
NM_001003722 | GLE1L | 1131 | 1149 | G | G | A | U | G | A | A | G | A | A | G | A | g | G | c | C | C | A | g | 59 | 3 | 12 | false | <90% | 3350 | |||
NM_007148 | ZNF179 | 2141 | 2159 | G | G | A | U | G | A | A | G | A | A | G | A | g | G | G | g | C | A | g | 58 | 3 | 12 | false | <90% | 3209 | |||
NM_130393 | PTPRD | 3261 | 3279 | G | G | A | U | G | A | A | G | A | A | G | A | a | G | G | C | u | u | g | 58 | 4 | 12 | false | <90% | 8845 | |||
NM_001040712 | PTPRD | 3252 | 3270 | G | G | A | U | G | A | A | G | A | A | G | A | a | G | G | C | u | u | g | 58 | 4 | 12 | false | <90% | 8848 | |||
NM_130391 | PTPRD | 4455 | 4473 | G | G | A | U | G | A | A | G | A | A | G | A | a | G | G | C | u | u | g | 58 | 4 | 12 | false | <90% | 10039 | |||
NM_130392 | PTPRD | 4467 | 4485 | G | G | A | U | G | A | A | G | A | A | G | A | a | G | G | C | u | u | g | 58 | 4 | 12 | false | <90% | 10051 | |||
NM_002839 | PTPRD | 4494 | 4512 | G | G | A | U | G | A | A | G | A | A | G | A | a | G | G | C | u | u | g | 58 | 4 | 12 | false | <90% | 10078 | |||
NM_000384 | APOB | 11999 | 12017 | a | u | A | U | G | A | A | G | A | A | G | A | U | G | G | C | a | A | a | 58 | 4 | 14 | ac | false | <90% | 14121 | ||
XM_379774 | KIAA1856 | 4740 | 4758 | a | G | A | a | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 56 | 3 | 14 | bc | false | <90% | 5311 | ||
XM_941553 | KIAA1856 | 4740 | 4758 | a | G | A | a | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 56 | 3 | 14 | bc | false | <90% | 5311 | ||
NM_001080495 | KIAA1856 | 4740 | 4758 | a | G | A | a | G | A | A | G | A | A | G | A | U | G | G | C | C | A | g | 56 | 3 | 14 | bc | false | <90% | 5311 | ||
NM_006622 | PLK2 | 2267 | 2285 | u | G | u | U | G | A | A | G | A | A | G | A | U | G | G | a | C | A | U | 52 | 3 | 12 | c | false | <90% | 2795 | ||
XR_016935 | LOC645749 | 262 | 280 | u | a | A | a | G | A | A | G | A | A | G | A | U | G | G | C | C | A | U | 49 | 3 | 15 | bc | false | <90% | 1475 | ||
XR_019290 | LOC645749 | 352 | 370 | u | a | A | a | G | A | A | G | A | A | G | A | U | G | G | C | C | A | U | 49 | 3 | 15 | bc | false | <90% | 1565 | ||
XM_928515 | LOC645490 | 714 | 732 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | u | g | A | U | 48 | 3 | 14 | c | false | <90% | 1134 | ||
XM_001132385 | LOC645490 | 717 | 735 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | u | g | A | U | 48 | 3 | 14 | c | false | <90% | 1137 | ||
NM_004592 | SFRS8 | 1007 | 1025 | u | G | A | U | G | A | A | G | A | A | G | A | U | G | G | g | a | A | U | 48 | 3 | 14 | c | false | <90% | 3245 | ||
NM_005382 | NEFM | 1581 | 1599 | G | G | A | g | G | A | A | G | A | A | G | A | a | G | G | C | C | A | g | 47 | 3 | 8 | false | <90% | 3238 | |||
XR_017379 | LOC643737 | 211 | 229 | G | G | A | U | G | A | A | G | A | A | G | A | U | G | a | C | u | A | c | 46 | 3 | 14 | c | false | <90% | 1272 | ||
XR_019602 | LOC643737 | 211 | 229 | G | G | A | U | G | A | A | G | A | A | G | A | U | G | a | C | u | A | c | 46 | 3 | 14 | c | false | <90% | 1272 | ||
NM_014891 | PDAP1 | 313 | 331 | G | G | A | U | G | A | A | G | A | A | G | A | U | G | a | C | u | A | c | 46 | 3 | 14 | c | false | <90% | 2383 | ||
NM_017429 | BCMO1 | 1376 | 1394 | G | a | A | g | G | A | A | G | A | A | G | A | U | G | G | C | C | A | a | 46 | 3 | 14 | bc | false | <90% | 2446 | ||
XR_017201 | LOC653758 | 297 | 315 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | a | a | c | U | 45 | 4 | 14 | c | false | <90% | 881 | ||
XR_018389 | LOC653758 | 297 | 315 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | a | a | c | U | 45 | 4 | 14 | c | false | <90% | 881 | ||
XM_370567 | KIAA1975 | 507 | 525 | G | G | A | U | G | A | A | G | A | A | G | A | U | G | u | C | u | g | g | 44 | 4 | 14 | c | false | <90% | 3182 | ||
XM_937229 | KIAA1975 | 507 | 525 | G | G | A | U | G | A | A | G | A | A | G | A | U | G | u | C | u | g | g | 44 | 4 | 14 | c | false | <90% | 3182 | ||
NR_002165 | HMG4L | 849 | 867 | a | G | A | U | G | A | A | G | A | A | G | A | U | G | G | g | g | A | g | 43 | 4 | 14 | c | false | <90% | 888 | ||
XR_017392 | LOC647020 | 802 | 820 | u | G | A | U | G | A | A | G | A | A | G | A | U | G | G | u | u | A | a | 43 | 4 | 14 | c | false | <90% | 894 | ||
XR_018413 | LOC647020 | 802 | 820 | u | G | A | U | G | A | A | G | A | A | G | A | U | G | G | u | u | A | a | 43 | 4 | 14 | c | false | <90% | 894 | ||
NM_020424 | LYRM1 | 1616 | 1634 | c | u | c | U | G | A | A | G | A | A | G | A | U | G | G | g | C | A | U | 40 | 4 | 12 | c | false | <90% | 1673 | ||
NM_014939 | KIAA1012 | 3481 | 3499 | u | G | A | U | G | A | A | G | A | A | G | g | U | G | u | C | C | A | U | 39 | 3 | 10 | false | <90% | 6283 | |||
NM_013385 | PSCD4 | 1344 | 1362 | G | G | A | a | G | A | A | G | A | A | G | A | U | u | G | C | C | A | g | 38 | 3 | 9 | c | false | <90% | 3221 | ||
XM_373945 | LOC388849 | 635 | 653 | a | G | A | g | G | A | A | G | A | A | G | A | U | G | G | u | C | A | U | 35 | 3 | 11 | c | false | <90% | 1267 | ||
XM_943471 | LOC388849 | 1205 | 1223 | a | G | A | g | G | A | A | G | A | A | G | A | U | G | G | u | C | A | U | 35 | 3 | 11 | c | false | <90% | 1837 | ||
NM_002532 | NUP88 | 1049 | 1067 | G | G | A | a | G | A | A | G | A | A | G | A | U | G | a | C | C | A | c | 33 | 3 | 10 | c | false | <90% | 2381 | ||
NM_012447 | STAG3 | 3530 | 3548 | G | G | A | g | G | A | A | G | A | A | G | A | U | G | G | C | u | c | a | 32 | 4 | 12 | c | false | <90% | 4285 | ||
NM_016447 | MPP6 | 1436 | 1454 | a | G | A | U | G | A | A | a | A | A | G | A | U | G | G | C | C | A | g | 30 | 3 | 10 | bc | false | <90% | 2201 | ||
NM_014453 | CHMP2A | 293 | 311 | a | c | A | U | u | A | A | G | A | A | G | A | U | G | G | C | C | A | a | 30 | 4 | 13 | bc | false | <90% | 926 | ||
NM_198426 | CHMP2A | 285 | 303 | a | c | A | U | u | A | A | G | A | A | G | A | U | G | G | C | C | A | a | 30 | 4 | 13 | bc | false | <90% | 928 | ||
NM_023001 | ARID4A | 1085 | 1103 | u | G | A | U | G | A | u | G | A | A | G | A | U | G | G | C | C | c | a | 24 | 4 | 10 | c | false | <90% | 5585 | ||
NM_023000 | ARID4A | 1085 | 1103 | u | G | A | U | G | A | u | G | A | A | G | A | U | G | G | C | C | c | a | 24 | 4 | 10 | c | false | <90% | 5630 | ||
NM_002892 | ARID4A | 1085 | 1103 | u | G | A | U | G | A | u | G | A | A | G | A | U | G | G | C | C | c | a | 24 | 4 | 10 | c | false | <90% | 5792 | ||
NM_213568 | SLC39A3 | 1121 | 1139 | a | a | A | U | G | g | A | G | A | A | G | A | U | G | G | C | C | A | U | 23 | 3 | 13 | bc | false | <90% | 3005 | ||
NM_000435 | NOTCH3 | 5184 | 5202 | G | c | A | U | G | A | A | G | A | A | c | A | U | G | G | C | C | A | a | 22 | 3 | 8 | c | false | <90% | 8089 | ||
NM_012235 | SCAP | 1430 | 1448 | u | c | A | U | G | A | A | G | A | A | c | A | U | G | G | C | C | A | c | 20 | 4 | 8 | c | false | <90% | 4255 | ||
NM_018227 | UBE1L2 | 185 | 203 | c | a | A | U | G | c | A | G | A | A | G | A | U | G | G | C | C | A | a | 18 | 4 | 12 | bc | false | <90% | 5385 | ||
NM_014240 | LIMD1 | 1960 | 1978 | c | a | A | U | G | A | u | G | A | A | G | A | U | G | G | C | C | A | c | 15 | 4 | 11 | bc | false | <90% | 6284 | ||
NM_005923 | MAP3K5 | 3937 | 3955 | G | G | A | U | G | u | A | G | A | A | G | A | U | G | a | C | C | A | U | 12 | 2 | 8 | c | false | <90% | 5215 | ||
XM_001134206 | LOC729987 | 16 | 34 | u | G | A | U | G | A | A | a | A | A | G | A | U | G | G | a | C | A | U | 9 | 3 | 7 | c | false | <90% | 567 | ||
XM_001129778 | LOC730785 | 16 | 34 | u | G | A | U | G | A | A | a | A | A | G | A | U | G | G | a | C | A | U | 9 | 3 | 7 | c | false | <90% | 567 | ||
NM_002913 | RFC1 | 2288 | 2306 | G | G | A | U | G | A | A | G | u | A | G | A | U | G | G | C | a | u | g | 8 | 4 | 8 | c | false | <90% | 4925 | ||
NM_003425 | ZNF45 | 555 | 573 | G | G | A | U | G | A | u | G | A | A | G | A | U | G | G | C | a | A | c | 5 | 3 | 9 | c | false | <90% | 3178 | ||
NM_006080 | SEMA3A | 1632 | 1650 | G | G | A | U | G | c | A | G | A | A | G | A | U | G | G | a | C | A | g | 5 | 3 | 9 | c | false | <90% | 5672 | ||
NM_002152 | HRC | 1525 | 1543 | a | G | A | U | G | A | A | G | A | A | a | c | U | G | G | C | C | A | U | 2 | 3 | 9 | false | <90% | 2430 | |||
NM_015899 | PLEKHA9 | 1679 | 1697 | u | G | A | a | G | A | A | G | c | A | G | A | U | G | G | C | C | A | U | 1 | 3 | 10 | bc | false | <90% | 1839 | ||
NM_015025 | MYT1L | 2170 | 2188 | u | G | A | g | G | g | A | G | A | A | G | A | U | G | G | C | C | A | U | -2 | 3 | 13 | bc | false | <90% | 7152 | ||
NM_176096 | CDK5RAP3 | 1646 | 1664 | G | G | A | U | G | A | A | G | A | u | G | A | U | a | G | C | C | A | g | -7 | 3 | 9 | c | false | <90% | 1884 | ||
NM_016575 | NT5DC3 | 2528 | 2546 | G | G | A | g | G | A | g | G | A | A | G | A | U | G | G | C | C | A | c | -8 | 3 | 11 | bc | false | <90% | 7028 | ||
NM_144612 | LOXHD1 | 2697 | 2715 | G | G | A | g | G | A | A | G | A | u | G | A | U | G | G | C | C | A | g | -24 | 3 | 8 | bc | false | <90% | 4775 | ||
NM_001944 | DSG3 | 2512 | 2530 | G | G | A | g | G | A | A | G | A | c | G | A | U | G | G | C | C | A | g | -24 | 3 | 8 | bc | false | <90% | 5561 | ||
NM_015382 | HECTD1 | 2250 | 2268 | G | G | A | U | G | A | u | G | A | u | G | A | U | G | G | C | C | A | c | -54 | 3 | 8 | bc | false | <90% | 9134 |
Hits to Sense strand
Accession | Gene | Start | End | Details of mismatches | Spec. Score | Mismatches | Contiguous | Jackson style specificity | Hits similar gene | HSP Score | HSP % Identity | HSP length | Gene Length | ||||||||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |||||||||||||
NM_000069 | CACNA1S | 3348 | 3366 | A | U | G | G | C | C | A | U | C | U | U | C | U | U | C | A | U | C | a | 95 | 1 | 18 | abc | false | <90% | 6168 | ||
NM_005630 | SLCO2A1 | 1634 | 1652 | c | c | G | G | C | C | A | U | C | U | U | C | c | U | C | A | U | C | u | 71 | 4 | 10 | false | <90% | 4040 | |||
NM_007176 | C14orf1 | 538 | 556 | u | U | G | G | C | C | A | U | C | U | U | C | U | U | C | c | U | u | C | 69 | 3 | 14 | c | false | <90% | 2274 | ||
NM_212533 | ABCA2 | 5523 | 5541 | A | U | c | G | C | C | A | U | C | U | U | C | a | U | C | A | U | C | g | 65 | 3 | 9 | false | <90% | 8164 | |||
NM_001606 | ABCA2 | 5531 | 5549 | A | U | c | G | C | C | A | U | C | U | U | C | a | U | C | A | U | C | g | 65 | 3 | 9 | false | <90% | 8172 | |||
NM_001376 | DYNC1H1 | 6082 | 6100 | A | U | G | G | C | C | A | U | C | U | U | C | a | U | C | A | c | C | a | 61 | 3 | 12 | false | <90% | 14229 | |||
NM_016615 | SLC6A13 | 1043 | 1061 | u | U | u | G | C | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 58 | 3 | 10 | c | false | <90% | 2215 | ||
NM_001043 | SLC6A2 | 1128 | 1146 | u | U | c | G | C | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 58 | 3 | 10 | c | false | <90% | 3347 | ||
XM_001130258 | FAM69B | 2053 | 2071 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | g | C | C | 56 | 2 | 13 | c | false | <90% | 2332 | ||
NM_001003841 | SLC6A19 | 702 | 720 | c | U | G | a | C | C | A | U | C | U | U | C | c | U | C | A | U | C | C | 50 | 3 | 8 | false | <90% | 1905 | |||
NM_015948 | SLC35B3 | 122 | 140 | c | U | G | c | C | C | A | U | C | U | U | C | c | U | C | A | U | C | C | 50 | 3 | 8 | false | <90% | 2068 | |||
NM_152246 | CPT1B | 406 | 424 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | c | g | g | 49 | 4 | 13 | c | false | <90% | 2625 | ||
NM_152245 | CPT1B | 361 | 379 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | c | g | g | 49 | 4 | 13 | c | false | <90% | 2834 | ||
NM_004377 | CPT1B | 406 | 424 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | c | g | g | 49 | 4 | 13 | c | false | <90% | 2879 | ||
NM_152253 | CHKB | 2531 | 2549 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | c | g | g | 49 | 4 | 13 | c | false | <90% | 4914 | ||
NM_152247 | CPT1B | 2531 | 2549 | A | U | G | G | C | C | A | U | C | U | U | C | U | c | C | A | c | g | g | 49 | 4 | 13 | c | false | <90% | 4914 | ||
NM_000781 | CYP11A1 | 1458 | 1476 | A | U | G | a | C | C | A | U | C | U | U | C | c | U | C | A | U | C | a | 47 | 3 | 8 | false | <90% | 1821 | |||
NM_152717 | MGC35295 | 96 | 114 | g | U | G | G | g | C | A | U | C | U | U | C | U | U | C | A | U | C | g | 41 | 3 | 13 | bc | false | <90% | 1557 | ||
NM_178831 | GATS | 1592 | 1610 | u | g | a | G | C | C | A | U | C | U | U | C | U | U | C | c | U | C | C | 40 | 4 | 12 | c | false | <90% | 3493 | ||
NM_000720 | CACNA1D | 3560 | 3578 | A | U | c | u | C | C | A | U | C | U | U | C | U | U | C | A | U | C | a | 38 | 3 | 14 | bc | false | <90% | 7193 | ||
NM_000719 | CACNA1C | 3689 | 3707 | A | U | c | u | C | C | A | U | C | U | U | C | U | U | C | A | U | C | a | 38 | 3 | 14 | bc | false | <90% | 13432 | ||
NM_003802 | MYH13 | 1679 | 1697 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 29 | 2 | 8 | c | false | <90% | 5992 | ||
NM_017533 | MYH4 | 1703 | 1721 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 29 | 2 | 8 | c | false | <90% | 6016 | ||
NM_002470 | MYH3 | 1663 | 1681 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 29 | 2 | 8 | c | false | <90% | 6037 | ||
NM_005963 | MYH1 | 1686 | 1704 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 29 | 2 | 8 | c | false | <90% | 6038 | ||
NM_017534 | MYH2 | 1682 | 1700 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 29 | 2 | 8 | c | false | <90% | 6061 | ||
NM_031936 | GPR61 | 451 | 469 | g | U | G | G | C | C | c | U | C | U | U | C | U | U | C | A | U | g | C | 29 | 3 | 10 | c | false | <90% | 2462 | ||
NM_020311 | CXCR7 | 1036 | 1054 | c | U | G | G | a | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 27 | 3 | 8 | c | false | <90% | 2114 | ||
NM_001047841 | CXCR7 | 1233 | 1251 | c | U | G | G | a | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 27 | 3 | 8 | c | false | <90% | 2311 | ||
NM_002472 | MYH8 | 1666 | 1684 | c | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | C | 27 | 3 | 8 | c | false | <90% | 6016 | ||
NM_198447 | GOLT1A | 237 | 255 | u | U | c | G | g | C | A | U | C | U | U | C | U | U | C | A | U | C | C | 26 | 3 | 14 | bc | false | <90% | 883 | ||
NM_130840 | ATP6V0A4 | 1543 | 1561 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | u | 24 | 3 | 8 | c | false | <90% | 3049 | ||
NM_130841 | ATP6V0A4 | 1601 | 1619 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | u | 24 | 3 | 8 | c | false | <90% | 3107 | ||
NM_020632 | ATP6V0A4 | 1646 | 1664 | A | U | G | G | g | C | A | U | C | U | U | C | U | c | C | A | U | C | u | 24 | 3 | 8 | c | false | <90% | 3152 | ||
NM_153252 | BRWD3 | 4813 | 4831 | u | g | G | G | C | C | A | U | u | U | U | C | U | U | C | A | U | C | g | 21 | 4 | 9 | bc | false | <90% | 6085 | ||
NM_052956 | ACSM1 | 729 | 747 | A | U | G | G | u | C | A | U | C | U | U | C | U | U | C | A | c | C | a | 20 | 3 | 11 | c | false | <90% | 2051 | ||
NM_022059 | CXCL16 | 1116 | 1134 | c | U | G | G | C | C | A | U | C | a | U | C | U | U | C | A | U | C | C | 15 | 2 | 9 | bc | false | <90% | 2249 | ||
NM_000144 | FXN | 819 | 837 | c | U | G | G | C | u | A | U | C | U | U | C | U | c | C | A | U | C | C | 15 | 3 | 7 | c | false | <90% | 2262 | ||
NM_181425 | FXN | 819 | 837 | c | U | G | G | C | u | A | U | C | U | U | C | U | c | C | A | U | C | C | 15 | 3 | 7 | c | false | <90% | 2270 | ||
NM_207321 | C10orf129 | 776 | 794 | A | U | G | G | C | C | A | U | a | U | U | C | U | U | C | A | c | C | a | 11 | 3 | 8 | c | false | <90% | 2307 | ||
NM_000388 | CASR | 2803 | 2821 | A | U | G | c | u | C | A | U | C | U | U | C | U | U | C | A | U | C | g | 6 | 3 | 13 | bc | false | <90% | 4913 | ||
NM_138373 | MYADM | 780 | 798 | u | a | c | G | C | C | A | U | C | U | g | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 3077 | ||
NM_001020820 | MYADM | 780 | 798 | u | a | c | G | C | C | A | U | C | U | g | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 3077 | ||
NM_001020819 | MYADM | 844 | 862 | u | a | c | G | C | C | A | U | C | U | g | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 3141 | ||
NM_001020821 | MYADM | 912 | 930 | u | a | c | G | C | C | A | U | C | U | g | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 3209 | ||
NM_001020818 | MYADM | 946 | 964 | u | a | c | G | C | C | A | U | C | U | g | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 3243 | ||
NM_080491 | GAB2 | 1888 | 1906 | c | a | a | G | C | C | A | U | C | U | a | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 6007 | ||
NM_012296 | GAB2 | 1934 | 1952 | c | a | a | G | C | C | A | U | C | U | a | C | U | U | C | A | U | C | C | 5 | 4 | 8 | c | false | <90% | 6053 | ||
XR_016479 | LOC389740 | 925 | 943 | g | c | u | G | C | C | A | c | C | U | U | C | U | U | C | A | U | C | C | 4 | 4 | 11 | bc | false | <90% | 1548 | ||
XR_016304 | LOC441416 | 1382 | 1400 | g | c | u | G | C | C | A | c | C | U | U | C | U | U | C | A | U | C | C | 4 | 4 | 11 | bc | false | <90% | 2159 | ||
NM_015234 | GPR116 | 3333 | 3351 | g | c | u | G | C | C | A | c | C | U | U | C | U | U | C | A | U | C | C | 4 | 4 | 11 | bc | false | <90% | 5514 | ||
NM_001005498 | RHBDF2 | 2284 | 2302 | A | U | c | G | C | C | A | U | C | a | U | C | U | U | C | A | U | C | C | -2 | 2 | 9 | bc | false | <90% | 3532 | ||
NM_024599 | RHBDF2 | 2371 | 2389 | A | U | c | G | C | C | A | U | C | a | U | C | U | U | C | A | U | C | C | -2 | 2 | 9 | bc | false | <90% | 3619 | ||
NM_012116 | CBLC | 413 | 431 | c | U | G | G | C | C | A | U | C | a | U | C | U | U | C | A | g | C | C | -8 | 3 | 8 | c | false | <90% | 1575 | ||
NM_006182 | DDR2 | 1603 | 1621 | g | U | G | G | C | C | A | U | C | a | U | C | U | U | u | A | U | C | C | -9 | 3 | 8 | c | false | <90% | 3172 | ||
NM_001014796 | DDR2 | 1683 | 1701 | g | U | G | G | C | C | A | U | C | a | U | C | U | U | u | A | U | C | C | -9 | 3 | 8 | c | false | <90% | 3252 | ||
NM_152988 | SPPL2B | 603 | 621 | A | U | G | G | u | C | A | U | C | a | U | C | U | U | C | A | U | C | a | -39 | 3 | 8 | bc | false | <90% | 3769 | ||
NM_001077238 | SPPL2B | 603 | 621 | A | U | G | G | u | C | A | U | C | a | U | C | U | U | C | A | U | C | a | -39 | 3 | 8 | bc | false | <90% | 3832 |
3 prime UTR Seed matches
Hits to same gene : 0
Hits to other genes : 1954
View matched accessions
3 prime seed match details
Immunostimulatory motif search results
UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).
GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).
Settings used for search
Scores were calculated using scoring scheme SS1
Using AVG scoring mode.
Hit scores
Parameter | Spec. Score cut-off | Colour | Comment |
Hit to same gene | Colour | Hits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit. | |
High scoring hit | ≥80 | Colour | Hits are very likely to cause an off-target effect |
Medium scoring hit | <80¸≥40 | Colour | Hits with a small chance of causing an off target effect. |
Low scoring hit | Colour | Hits very unlikely to cause an off-target effect |
The mismatches are colour coded based on the weighting of that position.
Cut-off | Colour |
Match | Colour |
Wobble base pairs (G-U) | Colour |
Critical bases (none) | Colour |
0.6 bits | Colour |
0.4 bits | Colour |
0.2 bits | Colour |
SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).
Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer