Predicted Off-targets for siRNA "cuaaggaccuaacaaaguu" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

2 hits were found for CUAAGGACCUAACAAAGUU (0 guide strand hits and 2 sense strand hits.)

Hits to Sense strand



AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
XM_941684 LOC220433 298 316 cACUgUGUUAGGUCCUcAG23 3 11 c false   <90%   2672
XM_930211 LOC220433 298 316 cACUgUGUUAGGUCCUcAG23 3 11 c false   <90%   2672


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1630
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_014809KIAA03194
NM_175736FMNL33
NM_198900FMNL33
NM_024345WDR323
NM_0011016763
NM_001002860BTBD72
NM_002318LOXL22
NM_020453ATP10D2
NM_0010853772
NM_002387MCC2
NM_024949WWC22
NM_173582PGM2L12
XM_001126151LOC7278582
XM_001130844LOC7287642
NM_032865TNS42
XM_209227LOC6534642
NM_207012AP3M12
NM_012095AP3M12
XM_373030LOC2855562
XM_939505LOC2855562
NM_001003407ABLIM12
NM_001003408ABLIM12
NM_002313ABLIM12
NM_006720ABLIM12
NM_178498SLC5A122
NM_0204592
NM_005504BCAT12
NM_012164FBXW22
NM_015361R3HDM12
NM_0209112
NM_022465IKZF42
NM_003966SEMA5A2
NM_020456C13orf12
NM_015576ERC22
NM_001037293PALM22
NM_053016PALM22
NM_021255PELI22
NM_0011023962
NM_025073SIKE2
NM_001155ANXA62
NM_004033ANXA62
NM_015886PI152
NM_015055SWAP702
NM_182608ANKRD332
NM_152407GRPEL22
NM_001077484SLC38A12
NM_030674SLC38A12
NM_018218USP402
NM_024947PHC32
NM_198461LONRF22
NM_0011128082
NM_015978TNNI3K2
NM_004172SLC1A32
NM_013411AK22
XM_938127ZNF6292
NM_001080417ZNF6292
NM_001008493ENAH2
NM_018212ENAH2
NM_000719CACNA1C2
NM_001040285PAPD52
NM_001040284PAPD52
NM_016422RNF1412
NM_1827627A52
NM_017488ADD22
NM_020205OTUD7B2
NM_006516SLC2A12
NM_020133AGPAT42
NM_012244SLC7A82
NM_182728SLC7A82
NM_014613UBXD82
NM_052846EMILIN32
NM_020122KCMF12
NM_002264KPNA12
NM_000210ITGA62
NM_001079818ITGA62
NM_020947KIAA16092
NM_004745DLGAP22
NM_005202COL8A22
NM_001039479KIAA03172
NM_001001412FAM26C2
NM_005124NUP1532
NM_001821CHML2
NM_144973MGC240392
NM_001008408RBM332
NM_053043PRR82
NM_023078PYCRL2
NM_013382POMT22
NM_012153EHF2
XM_928464LOC1465172
NM_020704FAM40B2
NM_001081461JMJD62
NM_001621AHR2
NM_145238ZSCAN202
NM_014935PLEKHA62
NM_080617CBLN42
NM_001032288UBE2V12
NM_017637BNC21
NM_153045C9orf911
NM_017582UBE2Q11
NM_0155511
NM_016107ZFR1
NM_013233STK391
NM_005596NFIB1
NM_033124CCDC651
NM_153703PODN1
NM_032547SCOC1
NM_012412H2AFV1
NM_201516H2AFV1
NM_201436H2AFV1
NM_201517H2AFV1
NM_152349KRT222P1
NM_014631SH3PXD2A1
NM_014864FAM20B1
NM_145733SEPT31
NM_019106SEPT31
NM_015508TIPARP1
NM_194434VAPA1
NM_003574VAPA1
NM_017775TTC191
NM_002442MSI11
NM_024713C15orf291
NM_006991ZNF1971
NM_003041SLC5A21
NM_020665TMEM271
NM_182767SLC6A151
NM_001042599ERBB41
NM_005235ERBB41
XM_943029LOC3890431
XM_374012LOC3890431
XM_001134314LOC7322161
NM_001080393GLT8D41
NM_000390CHM1
NM_020447C15orf171
NM_015015JMJD2B1
NM_172375KCNH51
NM_004791ITGBL11
NM_000112SLC26A21
NM_006924SFRS11
NM_001078166SFRS11
NM_080392PTP4A21
NM_080391PTP4A21
XM_001132378PTP4A21
XM_001132367PTP4A21
XM_001132372PTP4A21
XM_001132369PTP4A21
XM_001132357PTP4A21
NM_177549PRNT1
NM_032435KIAA18041
NM_172164NASP1
NM_002482NASP1
NM_152298NASP1
NM_183245INVS1
NM_014425INVS1
NM_030641APOL61
NM_004232SOCS61
NM_033151ABCC111
NM_145186ABCC111
NM_032583ABCC111
NM_033034TRIM51
NM_006403NEDD91
NM_174891C14orf791
NM_020200PRTFDC11
NM_0010976361
NM_0010976341
NM_0010976351
NM_001490GCNT11
NM_0010976331
NM_0177821
NM_001852COL9A21
NM_173497HECTD21
NM_032571EMR31
NM_012308FBXL111
NM_004440EPHA71
NM_016289CAB391
NM_152315FAM55A1
NM_002223ITPR21
NM_000602SERPINE11
NM_016098BRP44L1
NM_001008710RBPMS1
NM_001008711RBPMS1
NM_006867RBPMS1
NM_001024936WASF11
NM_003931WASF11
NM_001024934WASF11
NM_001024935WASF11
NM_022353OSGEPL11
XM_001132247C1orf1081
NM_019020TBC1D161
NM_004584RAD9A1
NM_006214PHYH1
NM_001037537PHYH1
NM_006618JARID1B1
XM_376444LOC1334911
XM_941190LOC1334911
NM_014771RNF401
NM_021930RINT11
NM_020177FEM1C1
NM_014767SPOCK21
NM_172020POM1211
XM_001128149LOC7303161
XM_001129924LOC7293161
NM_014880CD3021
NM_183387EML51
XM_001133677LOC7292641
XM_001133674LOC7292641
XM_001133686LOC7293551
XM_001133681LOC7293551
XM_930448LOC6535501
NM_025165ELL31
NM_152694ZCCHC51
NM_017440MDM11
NM_003918GYG21
NM_001079855GYG21
NM_024918DSN11
NM_017596KIF21B1
NM_012281KCND21
NM_002829PTPN31
NM_000332ATXN11
NM_001012515FECH1
NM_000140FECH1
NM_138554TLR41
NM_024577SH3TC21
NM_021984GABRE1
NM_021987GABRE1
NM_004961GABRE1
NM_021990GABRE1
NM_020227PRDM91
NM_017948NOL81
NM_000780CYP7A11
NM_024077SECISBP21
NM_016248AKAP111
XM_938519DKFZP434I07141
XM_929673DKFZP434I07141
NM_198451FOXR21
NM_025152NUBPL1
NM_0011055371
NM_005081ZNF1421
XM_291671RBM201
XM_939337RBM201
NM_012400PLA2G2D1
NM_031954KCTD101
NM_194292SASS61
NM_152715TBCEL1
NM_015156RCOR11
NM_152903KBTBD61
NM_015132SNX131
NM_003954MAP3K141
NM_018451CENPJ1
NM_005168RND31
NM_001042758SRGAP21
NM_054014FKBP1A1
NM_0011055181
NM_017673C1orf261
NM_001003652SMAD21
NM_005901SMAD21
NM_000372TYR1
XM_001133783LOC7295821
XM_001131644LOC7309491
NM_015313ARHGEF121
NM_018841GNG121
NM_001083620GRIA21
NM_000826GRIA21
NM_001083619GRIA21
NM_033481FBXO91
NM_033480FBXO91
NM_012347FBXO91
NM_005590MRE11A1
NM_005591MRE11A1
NM_182970RIMS41
NM_0146871
NM_007271STK381
NM_139281WDR361
NM_0153481
NM_001037131CENTG21
NM_014914CENTG21
NM_177968PPM1B1
NM_002598PDCD21
NM_024653PRKRIP11
NM_0149871
NM_001859SLC31A11
NM_022788P2RY121
NM_176876P2RY121
NM_005686SOX131
NM_001040000MLLT41
NM_002945RPA11
NM_022454SOX171
NM_021089ZNF81
NM_002149HPCAL11
NM_134421HPCAL11
NM_174917LOC1973221
NM_001013661VSIG81
NM_001010891MTX31
NM_016410CHMP51
NM_003202TCF71
NM_201632TCF71
NM_213648TCF71
NM_201634TCF71
NM_133371MYOZ31
NM_016204GDF21
NM_001039395C9orf681
NM_006275SFRS61
NM_101395DYRK1A1
NM_178550C1orf1101
NM_000633BCL21
NM_0208551
NM_181539KRT261
NM_018374TMEM106B1
NM_000129F13A11
NM_152860SP71
NM_0010981731
NM_052996PRDM71
NM_001024649CANX1
NM_001746CANX1
NM_000885ITGA41
NM_017599VEZT1
NM_024989PGAP11
XM_001131619LOC1218381
XM_001133828LOC1218381
XM_930027LOC1512341
XM_938725LOC1512341
NM_016083CNR11
NM_033181CNR11
NM_006633IQGAP21
NM_144696C1orf1251
NM_182766C1orf1251
NM_145049UBLCP11
NM_001042646TRAK11
NM_0010982131
NM_0010982121
NM_000861HRH11
NM_0010982111
NM_014279OLFM11
NM_002761PRM11
NM_0011056591
NM_198510ITIH5L1
NM_152495CNIH31
NM_002531NTSR11
XM_001127482LOC7284451
NM_001001549GRB101
NM_001001555GRB101
NM_001001550GRB101
NM_005311GRB101
NM_001077418FLJ221671
NM_001077416FLJ221671
NM_001077419FLJ221671
XM_001134363FOXK21
XM_001134364FOXK21
NM_004514FOXK21
NM_015634KIAA12791
NM_0011046471
NM_018155SLC25A361
NM_032626RBBP61
NM_018385LSG11
NM_152261C12orf231
NM_018466ALG131
NM_001196BID1
NM_197967BID1
NM_197966BID1
NM_173602DIP2B1
NM_021939FKBP101
NM_020927KIAA15761
NM_030621DICER11
NM_177438DICER11
NM_006613GRAP1
NM_145212MRPL301
NM_014310RASD21
NM_004448ERBB21
NM_001005862ERBB21
NM_006334OLFM11
NM_001942DSG11
NM_002519NPAT1
NM_133474ZNF7211
NM_000916OXTR1
NM_024624SMC61
NM_017633FAM46A1
NM_018247TMEM30A1
NM_001039770FLJ450321
NM_014752SPCS21
NM_003670BHLHB21
NM_032594INSM21
NM_016639TNFRSF12A1
NM_014827ZC3H11A1
XM_936434LOC4411551
XM_926112LOC4411551
XM_942821LOC4411551
XM_930997LOC4411551
XM_942819LOC4411551
XM_942815LOC4411551
XM_496814LOC4411551
XM_931006LOC4411551
NM_019035PCDH181
NM_012166FBXO101
NM_147134NFX11
NM_173648FLJ395021
NM_001042367LOC2836771
NM_018638ETNK11
NM_024758AGMAT1
NM_024900PHF171
NM_153321PMP221
NM_000304PMP221
NM_153322PMP221
NM_006699MAN1A21
NM_024520C2orf471
NM_020802KIAA13771
NM_006536CLCA21
NM_003884PCAF1
NM_152414BHLHB51
NM_080550AP1GBP11
NM_007247AP1GBP11
NM_007073BVES1
NM_147147BVES1
NM_005076CNTN21
NM_201252AFAR31
NM_001465FYB1
NM_199335FYB1
NM_032834ALG101
NM_001013620ALG10B1
NM_004655AXIN21
NM_005935AFF11
NM_000961PTGIS1
NM_001631ALPI1
NM_0010984021
NM_0010984031
NM_020727ZNF2951
NM_001024688NBN1
NM_002485NBN1
XM_378312LOC2831431
XM_943773LOC2831431
NM_022910NDRG41
NM_020465NDRG41
NM_032777GPR1241
NM_000544TAP21
NM_004028AQP41
NM_001650AQP41
NM_030817APOLD11
NM_138727ST7L1
NM_138728ST7L1
NM_017744ST7L1
NM_138572TBN1
NM_007192SUPT16H1
NM_003363USP41
NM_199443USP41
NM_004801NRXN11
NM_138735NRXN11
NM_021905GABBR11
NM_033133CNP1
NM_177965C8orf371
NM_003156STIM11
XM_932025LOC6441711
XM_944971LOC6441711
NM_001035005LOC4976611
NM_006691XLKD11
NM_198715PTGER31
NM_012064MIP1
NM_015993PLLP1
NM_001079812DIAPH11
NM_005219DIAPH11
NM_182522FAM19A41
NM_001005527FAM19A41
NM_025074FRAS11
NM_024643C14orf1401
NM_001042430C14orf1401
XM_926071LOC6425921
NM_0010996921
NM_007359CASC31
NM_001543NDST11
NM_002035FVT11
NM_001174ARHGAP61
NM_139057ADAMTS171
XM_001132928LOC7289691
NM_014286FREQ1
NM_0133181
NM_020231KTELC11
NM_152305KTELC11
NM_001552IGFBP41
NM_006288THY11
NM_175053KRT741
XM_946373LOC6543401
NM_134424RAD521
NM_130446KLHL61
NM_203289POU5F11
NM_002701POU5F11
NM_018656SLC35E31
NM_000891KCNJ21
NM_145041TMEM106A1
XM_001133059LOC7287721
XM_001133074LOC7287721
XM_001133066LOC7287721
NM_020144PAPOLB1
NM_003942RPS6KA41
NM_001006944RPS6KA41
NM_005238ETS11
NM_017736THUMPD11
NM_006731FCMD1
NM_001079802FCMD1
NM_004845PCYT1B1
NM_005604POU3F21
NM_004900APOBEC3B1
NM_145699APOBEC3A1
NM_021822APOBEC3G1
NM_014630ZNF5921
NM_152348WDR811
NM_006996SLC19A21
NM_007011ABHD21
NM_152924ABHD21
NM_033129SCRT21
NM_000348SRD5A21
NM_006133DAGLA1
NM_022166XYLT11
XM_001125986LOC2838241
NM_020127TUFT11
NM_145013C11orf451
NM_144682SLFN131
NM_0011045901
NM_0011045891
NM_0011045871
NM_152270SLFN111
NM_0011045881
NM_177948ARMCX31
NM_177947ARMCX31
NM_016607ARMCX31
NM_005338HIP11
NM_0010992221
NM_0010992231
NM_025103IFT741
NM_020345NKIRAS11
NM_001025603RFX51
NM_000449RFX51
NM_000351STS1
NM_024584CCDC1211
NM_000748CHRNB21
NM_020933ZNF3171
NM_004807HS6ST11
NM_000125ESR11
NM_0152071
NM_017586C9orf71
NM_004087DLG11
NM_0010984241
NM_0207001
NM_003982SLC7A71
NM_177924ASAH11
NM_004315ASAH11
NM_000411HLCS1
NM_006875PIM21
NM_004339PTTG1IP1
NM_001042520MGC130571
NM_001042521MGC130571
NM_001042519MGC130571
NM_032321MGC130571
NM_030762BHLHB31
NM_153688ZFP11
NM_198557RBM431
NM_021140UTX1
NM_020638FGF231
NM_024625ZC3HAV11
NM_001039938INTS61
NM_014702KIAA04081
NM_152754SEMA3D1
NM_004690LATS11
NM_032943SYTL21
NM_206929SYTL21
NM_206930SYTL21
NM_206927SYTL21
NM_032379SYTL21
NM_206928SYTL21
NM_198459DENND2C1
NM_016575NT5DC31
NM_213589RAPH11
NM_018057SLC6A151
NM_024523GCC11
NM_001013659ZNF7931
NM_004481GALNT21
NM_022474MPP51
NM_145284FAM122B1
NM_001931DLAT1
NM_006273CCL71
NM_003772JRKL1
NM_024753TTC21B1
NM_003392WNT5A1
NM_181645CCDC671
NM_017680ASPN1
NM_206595ESRRG1
NM_001438ESRRG1
NM_206594ESRRG1
NM_014223NFYC1
NM_002745MAPK11
NM_018644B3GAT11
NM_054025B3GAT11
NM_005497GJA71
NM_001080383GJA71
NM_0010853571
NM_181780BTLA1
NM_024631C11orf611
NM_015215CAMTA11
NM_031912SYT151
XM_938689KIAA16711
XM_371461KIAA16711
NM_145762GFRA41
NM_022139GFRA41
NM_152761CXorf581
NM_002239KCNJ31
NM_012294RAPGEF51
NM_001005176SP1401
NM_025191EDEM31
NM_022901LRRC191
NM_001565CXCL101
NM_014758SNX191
NM_170601SIAE1
NM_013943CLIC41
NM_014388C1orf1071
NM_183075CYP2U11
NM_006283TACC11
NM_203329CD591
NM_203331CD591
NM_203330CD591
NM_000611CD591
NM_201431RASSF61
NM_177532RASSF61
NM_018584CAMK2N11
NM_005080XBP11
NM_001955EDN11
NM_001007097NTRK21
NM_031435THAP21
NM_001080541MGA1
XM_932727MGA1
XM_939296MGA1
XM_944092MGA1
NM_012175FBXO31
XM_370707LOC3878901
XM_941692LOC3878901
XM_930224LOC6471901
XM_941815LOC6471901
NM_001080975REPS21
NM_004726REPS21
NM_212554LOC3998181
NM_001040424PRDM151
NM_003203C2orf31
NM_001002800SMC41
NM_005496SMC41
NM_000958PTGER41
NM_019022TXNDC101
NM_015257KIAA02861
NM_001024843TNRC6B1
NM_015088TNRC6B1
NM_016026RDH111
NM_012479YWHAG1
NM_001258CDK31
NM_012302LPHN21
NM_017759FLJ203091
NM_001281TBCB1
NM_014145C20orf301
NM_001009923C20orf301
NM_001009924C20orf301
NM_001009925C20orf301
NM_012081ELL21
NM_001017922ERMAP1
NM_018538ERMAP1
NM_003281TNNI11
NM_016261TUBD11
NM_0010996791
NM_012210TRIM321
NM_033191KRTAP9-41
NM_031962KRTAP9-31
NM_031961KRTAP9-21
NM_0319631
XM_001128292LOC7287271
NM_001005747CACNB41
NM_000726CACNB41
NM_001005746CACNB41
NM_000245MET1
NM_031854KRTAP4-121
NM_0010854301
XM_378876LOC1493511
XM_943142LOC1493511
NM_031844HNRPU1
NM_004501HNRPU1
NM_017649CNNM21
NM_199076CNNM21
NM_005407SALL21
NM_057749CCNE21
NM_032534KRBA11
NM_020717SHROOM41
NM_018352FLJ111841
NM_020921NIN1
NM_031284ADPGK1
NM_016075VPS361
NM_025057C14orf451
NM_003161RPS6KB11
NM_020768KCTD161
NM_018351FGD61
NM_006269RP11
NM_152390TMEM1781
NM_004744LRAT1
NM_013269CLEC2D1
NM_001004419CLEC2D1
NM_022124CDH231
NM_001001938C9orf471
NM_033394TANC11
NM_021925C2orf431
NM_016040TMED51
NM_0011045441
NM_0011045451
NM_017938FAM70A1
NM_181435C1QTNF31
NM_030945C1QTNF31
NM_001030060SAMD51
NM_024672THAP91
NM_080491GAB21
NM_012296GAB21
NM_003399XPNPEP21
NM_198277SLC37A21
NM_016591GCNT41
NM_002881RALB1
NM_006926SFTPA21
NM_0010986681
NM_001014797KCNMA11
NM_005851CDK2AP21
XM_001134399LOC7302571
XM_930678LOC6424411
XM_001134398LOC7302561
NM_001103ACTN21
NM_014939KIAA10121
NM_152222TNFRSF19L1
NM_032871TNFRSF19L1
NM_177977HAP11
NM_003949HAP11
NM_001079870HAP11
NM_001079871HAP11
NM_013250ZNF2151
NM_015644TTLL31
NM_001025930TTLL31
NM_0010992251
NM_144609CCDC431
NM_0321731
NM_019089HES21
NM_019009TOLLIP1
NM_005017PCYT1A1
XM_001125845LOC7303911
XM_001127758LOC7285551
NM_030952NUAK21
NM_173664ARL101
NM_020699GATAD2B1
NM_004748CCPG11
NM_020739CCPG11
NM_205846PRELID21
NM_138492PRELID21
NM_182960PRELID21
NM_206809MOG1
NM_001008228MOG1
NM_206812MOG1
NM_017682BEST21
NM_000262NAGA1
NM_172016TRIM391
NM_021253TRIM391
NM_002646PIK3C2B1
NM_024592SRD5A2L1
NM_000831GRIK31
NM_207170SYF21
NM_015484SYF21
NM_003292TPR1
NM_022755IPPK1
NM_016142HSD17B121
NM_170740ALDH5A11
NM_001080ALDH5A11
XM_370636LOC3877871
XM_945912LOC6508261
NM_014840NUAK11
NM_018724IL201
NM_006873STON11
NM_001669ARSD1
NM_145027KIF61
NM_002187IL12B1
NM_001039SCNN1G1
NM_198057TSC22D31
NM_001015881TSC22D31
NM_004089TSC22D31
NM_006486FBLN11
NM_013443ST6GALNAC61
NM_207428C11orf551
NM_006033LIPG1
NM_005259GDF81
NM_017686GDAP21
NM_001001389CD441
NM_001001390CD441
NM_001001391CD441
NM_001001392CD441
NM_000610CD441
NM_000476AK11
NM_018700TRIM361
NM_031890CECR61
NM_017801CMTM61
NM_145239PRRT21
NM_0010099841
NM_018326GIMAP41
NM_138621BCL2L111
NM_006538BCL2L111
NM_001048249DKFZP686E21581
NM_024811FLJ125291
NM_199459C10orf711
NM_207517ADAMTSL31
NM_018084KIAA12121
NM_001003760KLHL311
XM_938779LOC6539721
NM_007276CBX31
NM_016587CBX31
NM_015627LDLRAP11
NM_144994ANKRD231
NM_005014OMD1
XM_936719LOC6476621
NM_015541LRIG11
NM_006179NTF51
XM_934619LOC2845771
XM_945015LOC2845771
NM_001003940BMF1
NM_001003943BMF1
NM_001003942BMF1
NM_033503BMF1
NM_001038707CDC42SE11
NM_020239CDC42SE11
NM_016412IGF2AS1
NM_003837FBP21
NM_152396METTL61
NM_175080P2RX51
NM_002561P2RX51
NM_031200CCR91
NM_006641CCR91
NM_012213MLYCD1
NM_198157UBE2L31
NM_001065TNFRSF1A1
NM_021960MCL11
NM_182763MCL11
NM_006920SCN1A1
NM_004947DOCK31
NM_001025233CLLU11
NM_021913AXL1
NM_001699AXL1
NM_016478ZC3HC11
NM_0010994151
NM_003822NR5A21
NM_205860NR5A21
NM_133482RAD501
NM_005732RAD501
NM_014743KIAA02321
NM_0011005901
NM_030924ACSBG21
NM_032208ANTXR11
NM_002880RAF11
NM_000892KLKB11
NM_0151641
NM_183065TMEM1071
NM_032354TMEM1071
NM_003622PPFIBP11
NM_031866FZD81
NM_153369KIAA19191
NM_001004334GPR1791
XM_936553GPR1791
NM_014365HSPB81
NM_002737PRKCA1
NM_0010854291
NM_002898RBMS21
NM_014820TOMM70A1
NM_004375COX111
NM_006802SF3A31
XM_379228LOC4010931
XM_944985LOC4010931
NM_172240WDR51B1
NM_0151881
NM_018469TEX21
NM_198086JUB1
NM_032876JUB1
NM_175876EXOC81
NM_000944PPP3CA1
NM_0011045461
NM_004079CTSS1
NM_016174CEECAM11
NM_178564NRBP21
NM_006903PPA21
NM_176866PPA21
NM_176869PPA21
NM_176867PPA21
NM_001034191PPA21
NM_004385VCAN1
NM_019613WDR45L1
NM_013435RAX1
NM_000310PPT11
NM_001075098MOCS11
NM_005943MOCS11
NM_005942MOCS11
NM_138928MOCS11
NM_138434C7orf291
NM_001040701FUT61
NM_000150FUT61
NM_002378MATK1
NM_139354MATK1
NM_139355MATK1
XM_039733KIAA09531
XM_940464KIAA09531
NM_003298NR2C21
NM_012121CDC42EP41
NM_025195TRIB11
NM_017622C17orf591
NM_015604WDR21A1
NM_181340WDR21A1
NM_181341WDR21A1
NM_152418WDR21C1
NM_001029955WDR21B1
NM_022459XPO41
NM_001508GPR391
NM_007078LDB31
NM_001080114LDB31
NM_013999MEOX11
NM_004527MEOX11
NM_001040002MEOX11
NM_0010937251
NM_000555DCX1
NM_178152DCX1
NM_178153DCX1
NM_178151DCX1
NM_0155661
NM_015726WDR42A1
NM_000130F51
NM_014682ST181
NM_172239REXO1L11
NM_001949E2F31
NM_015655ZNF3371
NM_0251851
NM_0010129941
NM_006823PKIA1
NM_181839PKIA1
NM_006484DYRK1B1
NM_004714DYRK1B1
NM_006483DYRK1B1
NM_019064SDK21
NM_025236RNF391
NM_170769RNF391
NM_032946NXF51
NM_004012DMD1
NM_004016DMD1
NM_004009DMD1
NM_004017DMD1
NM_000109DMD1
NM_004011DMD1
NM_004015DMD1
NM_004023DMD1
NM_004022DMD1
NM_004020DMD1
NM_004021DMD1
NM_004007DMD1
NM_004006DMD1
NM_004013DMD1
NM_004014DMD1
NM_004018DMD1
NM_004010DMD1
NM_0330261
NM_002099GYPA1
NM_002355M6PR1
NM_002853RAD11
NM_133377RAD11
NM_175866UHMK11
NM_006084ISGF3G1
NM_032449CC2D1B1
NM_007077AP4S11
NM_032458PHF61
NM_001015877PHF61
NM_022820CYP3A431
NM_057095CYP3A431
NM_057096CYP3A431
NM_017460CYP3A41
NM_000765CYP3A71
NM_014952BAHD11
NM_001017440CALN11
NM_031468CALN11
NM_020644TMEM9B1
NM_021130PPIA1
NM_015138RTF11
NM_020125SLAMF81
NM_007068DMC11
NM_024769ASAM1
XM_001126103LOC7281881
NM_001029891PGAM41
XM_926954LOC6429691
XM_931734LOC6429691
NM_002629PGAM11
NM_001012961C1orf841
NM_001004125TUSC11
NM_001754RUNX11
NM_001001890RUNX11
NM_017919STX171
NM_017770ELOVL21
NM_199000LHFPL31
NM_052909KIAA19091
NM_015900PLA1A1
NM_015959TXNDC141
NM_176894P2RY131
NM_023914P2RY131
NM_170606MLL31
NM_003681PDXK1
NM_198061CES21
NM_003869CES21
NM_031309SCRT11
NM_212559XKRX1
NM_004628XPC1
NM_153442GPR261
NM_021977SLC22A31
NM_000599IGFBP51
NM_022121PERP1
NM_001039771CBLN31
NM_152722HEPACAM1
NM_004119FLT31
NM_001009899KIAA20181
NM_015425POLR1A1
NM_001042751STAG21
NM_001042750STAG21
NM_001042749STAG21
NM_006603STAG21
XM_001128291PARP81
NM_006593TBR11
NM_144671FAM109A1
NM_152737RNF1821
NM_001101ACTB1
XM_929706LOC6537811
NM_0010997711
XM_928585LOC6532691
NM_020960GPR1071
NM_014990GARNL11
NM_198582KLHL301
NM_006106YAP11
NM_1334711
NM_015488PNKD1
NM_022572PNKD1
XM_932810LOC6453231
XM_943660LOC6453231
NM_000872HTR71
NM_019859HTR71
NM_019860HTR71
NM_001007536AKR1CL11
NM_006061CRISP31
NM_018210FLJ107691
NM_177996EPB41L11
NM_012156EPB41L11
NM_015076CDC2L61
NM_021240DMRT31
NM_018423STYK11
NM_006997TACC21
NM_206860TACC21
NM_206862TACC21
NM_206861TACC21
NM_032792ZBTB451
NM_032452JPH41
NM_213604ADAMTSL51
NM_138413C10orf651
NM_006999POLS1
NM_000641IL111
NM_005337NCKAP1L1
NM_025134CHD91
NM_001034852SMOC11
NM_022137SMOC11
NM_024301FKRP1
NM_001039885FKRP1
NM_152677ZSCAN41
NM_014155ZBTB441
NM_0011055291
NM_006095ATP8A11
NM_138694PKHD11
NM_198836ACACA1
NM_198837ACACA1
NM_198834ACACA1
NM_198838ACACA1
NM_198839ACACA1
NM_001044722CSNK1G31
NM_001031812CSNK1G31
NM_001044723CSNK1G31
NM_004384CSNK1G31
NM_001012503KRTAP5-71
NM_021156TXNDC131
NM_006587CORIN1
NM_139177SLC39A111
XM_373553LOC3878951
XM_945559LOC3878951
NM_001018050POLR3H1
NM_138338POLR3H1
NM_001018052POLR3H1
NM_012345NUFIP11
NM_052811TRIM131
NM_213590TRIM131
NM_001007278TRIM131
NM_005798TRIM131
NM_199072MDFIC1
NM_173540FUT111
NM_001080428ODZ21
XM_945786ODZ21
XM_945788ODZ21
XM_942208ODZ21
XM_931456ODZ21
NM_198573C9orf1651
NM_017946FKBP141
NM_005109OXSR11
NM_182961SYNE11
NM_015293SYNE11
NM_033071SYNE11
NM_133650SYNE11
NM_020651PELI11
NM_016059PPIL11
NM_020935USP371
NM_007137ZNF811
NM_207446LOC4004511
NM_0011024451
NM_005613RGS41
NM_033506FBXO241
NM_007264ADMR1
NM_004711SYNGR11
NM_004170SLC1A11
NM_015902EDD11
XM_379324LOC3401131
XM_943214LOC3401131
NM_181656C17orf581
NM_017840MRPL161
NM_021978ST141
NM_003462DNALI11
XM_940069PPP1R3E1
XM_927029PPP1R3E1
NM_012154EIF2C21
NM_001039152RGS211
NM_000800FGF11
NM_033137FGF11
NM_033136FGF11
NM_052877MED81
NM_001005408KIAA17871
NM_032442KIAA17871
NM_001083924C1orf1161
NM_023938C1orf1161
NM_014862ARNT21
NM_152330FRMD61
NM_001042481FRMD61
XM_001133209LOC6465131
XM_001132717LOC6465131
NM_201532DGKZ1
NM_003646DGKZ1
NM_0011055401
NM_201533DGKZ1
NM_014817KIAA06441
NM_0321101
NM_022445TPK11
NM_001042482TPK11
NM_024908WDR761
NM_024909C6orf1341
NM_004710SYNGR21
NM_004271LY861
NM_181353ID11
NM_020375C12orf51
NM_005670EPM2A1
NM_004921CLCA31
XM_937698LOC6486291
NM_000744CHRNA41
NM_194255SLC19A11
NM_001040056MAPK31
NM_020245TULP41
NM_001007466TULP41
NM_018071FLJ103571
NM_004925AQP31
NM_019041MTRF1L1
NM_1383671
NM_001017916CYB5611
NM_001915CYB5611
NM_001017917CYB5611
NM_005883APC21
NM_173587RCOR21
NM_004128GTF2F21
NM_020772NUFIP21
NM_014663JMJD2A1
NM_005895GOLGA31
NM_018684KIAA11661
NM_032581FAM126A1
NM_022896LPIN31
NM_024709C1orf1151
NM_004697PRPF41
XM_001130398LOC7316661
XM_001131009LOC7296801
NM_021200PLEKHB11
NM_006054RTN31
NM_201429RTN31
NM_201428RTN31
NM_201430RTN31
NM_024886C10orf951
NM_198087ZNF2001
NM_198088ZNF2001
NM_003454ZNF2001
NM_015071ARHGAP261
NM_004686MTMR71
NM_014713LAPTM4A1
XM_001129630CCS1
XM_934514LOC6447141
XM_945782LOC6447141
NM_003714STC21
NM_017651AHI11
NM_0010996271
NM_0011127061
NM_0010985311
NM_006105RAPGEF31
NM_0010985321
NM_016084RASD11
NM_002034FUT51
NM_005374MPP21
NM_145799SEPT61
NM_015129SEPT61
NM_000151G6PC1
NM_004774PPARBP1
NM_015717CD2071
NM_032287LDOC1L1
NM_017768LRRC401
NM_198155C21orf331
NM_004649C21orf331
XM_001133002LOC7288041
NM_024956TMEM621
NM_018121C10orf61
NM_014470RND11
NM_014703VPRBP1
NM_173641EPHA101
NM_005910MAPT1
NM_016841MAPT1
NM_016834MAPT1
NM_016835MAPT1
NM_014648DZIP31
NM_014584ERO1L1
NM_005161AGTRL11
NM_138375CABLES11
NM_0011031611
NM_0011031601
NM_006040HS3ST41
XM_001132212HS3ST41
NM_207491MGC486281
NM_017831RNF1251
NM_182898CREB51
NM_004904CREB51
NM_001011666CREB51
NM_182899CREB51
NM_013348KCNJ141
NM_170720KCNJ141
NM_0011025751
NM_080836STK351
NM_014802KIAA05281
NM_001008693CST91
NM_020145SH3GLB21
NM_016339RAPGEFL11
NM_017483ADD21
NM_001617ADD21
XM_938825LOC6497551
XM_001132975LOC6497551
XM_001133003LOC7290201
XM_001133007LOC7290201
NM_199229RPE1
NM_006916RPE1
NM_033012TNFSF111
NM_003701TNFSF111
NM_003629PIK3R31
NM_152750FLJ238341
NM_006167NKX3-11
NM_006321ARIH21
NM_020807ZNF3191
NM_007185TNRC41
NM_173545C2orf131
NM_004836EIF2AK31
NM_030959OR12D31
NM_148571MRPL271
NM_002232KCNA31
NM_024940DOCK51
NM_020863ZFAT11
NM_015836WARS21
NM_201263WARS21
NM_152470RNF1651
NM_172373ELF11
NM_206933USH2A1
NM_177403RAB7B1
NM_030593SIRT21
NM_012237SIRT21
NM_006203PDE4D1
NM_0011046311
NM_018167BTBD71
NM_001040280CD831
NM_004233CD831
NM_015359SLC39A141
NM_152942TNFRSF81
NM_001243TNFRSF81
NM_005442EOMES1
NM_013255MKLN11
NM_152658THAP81
NM_012429SEC14L21
NM_004469FIGF1
NM_020119ZC3HAV11
NM_0010992871
NM_178006STARD131
NM_178007STARD131
NM_052851STARD131
NM_003916AP1S21
NM_0011052141
NM_004674ASH2L1
NM_032466ASPH1
NM_032468ASPH1
NM_018011FLJ101541
NM_000196HSD11B21
NM_032333C10orf581
NM_020914RNF2131
NM_153023SPATA131
XM_001127308FLJ376381
NM_152600ZNF5791
NM_000163GHR1
NM_145307PLEKHK11
NM_194439RNF2121
NM_178427ARNT1
NM_178426ARNT1
NM_001668ARNT1
XM_001127146IL7R1
NM_018134IQCC1
NM_001039712DEDD1
NM_032998DEDD1
NM_001039711DEDD1
NM_175862CD861
NM_006889CD861
NM_007125UTY1
NM_005441CHAF1B1
NM_013374PDCD6IP1
NM_203341SEP151
NM_004261SEP151
NM_0011055761
NM_152772TCP11L21
NM_020448NPAL31
NM_021982SEC24A1
NM_018999KIAA11281
NM_001024599HIST2H2BF1
XM_001127102LOC6478591
XM_001130815LOC6478591
NM_018013SOBP1
NM_198468C6orf1671
NM_152716FLJ368741
NM_004999MYO61
NM_031419NFKBIZ1
NM_001005474NFKBIZ1
NM_001039580MAP91
NM_000139MS4A21
NM_017410HOXC131
XM_001128589LOC7311431
XM_001126462LOC7280661
NM_001040057MGC404051
NM_152789MGC404051
XM_001128002LOC7281531
XM_001128014LOC7281531
NM_207404ZNF6621
NM_171998RAB39B1
NM_178584SEPT101
NM_144710SEPT101
NM_144639UROC11
NM_052931SLAMF61
NM_183078RNF81
NM_003958RNF81
NM_004959NR5A11
NM_199324OTUD41
NM_0011026531
XM_001130874LOC7284921
XM_936926SERF1A1
NM_022169ABCG41
NM_024627C22orf291
NM_024674LIN281
NM_006955ZNF33B1
NM_003286TOP11
NM_014358CLEC4E1
NM_006974ZNF33A1
NM_006954ZNF33A1
NM_018225SMU11
NM_152375KLHDC7A1
NM_174878CLRN11
NM_031911C1QTNF71
NM_006540NCOA21
NM_100486WAC1
NM_016628WAC1
NM_100264WAC1
NM_000397CYBB1
NM_020377CYSLTR21
NM_006646WASF31
NM_133448TMEM132D1
NM_006357UBE2E31
NM_182678UBE2E31
XM_944991C14orf821
XM_498578C14orf821
NM_006047RBM121
NM_152838RBM121
NM_022340ZFYVE201
XM_942952FLJ462841
XM_499123FLJ462841
NM_014701KIAA02561
NM_005228EGFR1
NM_020988GNAO11
NM_018719CDCA7L1
NM_032373PCGF51
NM_003742ABCB111
NM_003569STX71
NM_006252PRKAA21
NM_000327ROM11
NM_020937FANCM1
NM_012242DKK11
NM_006385ZNF2111
NM_198855ZNF2111
NM_006811SERINC31
NM_004850ROCK21
NM_144578C14orf321
NM_003999OSMR1
NM_016257HPCAL41
NM_013937OR11A11
NM_001010895LOC3757481
NM_002013FKBP31
NM_145803TRAF61
NM_004620TRAF61
NM_020185DUSP221
XM_001132925DUSP221
NM_001081573GAB31
NM_080612GAB31
NM_016206VGLL31
NM_001939DRP21
NM_0152951
NM_207330NPAL11
NM_006581FUT91
NM_001080410FBXO411
XM_001133261FBXO411
NM_016221DCTN41
XM_001132906C6orf121
NM_024607PPP1R3B1
NM_002702POU6F11
NM_145037FAM55C1
NM_006572GNA131
NM_032811TBRG11
NM_017516RAB391
NM_004727SLC24A11
NM_0011112831
NM_000618IGF11
NM_0011112841
NM_012189CABYR1
NM_153768CABYR1
NM_178580HM131
NM_153456HS6ST31
NM_133367PAQR81
NM_152420C9orf411
NM_031476CRISPLD21
NM_203446SYNJ11
NM_003895SYNJ11
NM_012279ZNF3461
NM_181783TMTC31
NM_005158ABL21
NM_007314ABL21
NM_0011001081
NM_014553TFCP2L11
NM_001031690FAM131B1
NM_014690FAM131B1
NM_020834HOMEZ1
NM_153619SEMA6D1
NM_153618SEMA6D1
NM_153616SEMA6D1
NM_153617SEMA6D1
NM_020858SEMA6D1
NM_033446FAM125B1
NM_003831RIOK31
NM_0011096621
NM_031431COG31
NM_020311CXCR71
NM_022351EFCBP11
NM_000629IFNAR11
NM_014385SIGLEC71
NM_016543SIGLEC71
NM_018004TMEM45A1
NM_1522931
NM_017912HERC61
NM_178314FLJ393781
NM_0010854001
NM_002126HLF1
NM_004090DUSP31
NM_003887DDEF21
NM_018243SEPT111
NM_018440PAG11
NM_001518GTF2I1
NM_032999GTF2I1
NM_033000GTF2I1
NM_033001GTF2I1
XM_001133646LOC7324371
NM_144718CCDC521
NM_145178ATOH71
NM_001039693FLJ379531
NM_019116UBFD11
NM_020190OLFML31
NM_003485GPR681
NM_015840ADAR1
NM_015841ADAR1
NM_001025107ADAR1
NM_001111ADAR1
NM_000880IL71
NM_006621AHCYL11
NM_133463AMZ11
NM_0010808261
NM_173607C14orf241
NM_001079519C14orf241
NM_018192LEPREL11
NM_000368TSC11
NM_014504RABGEF11
XM_001128001LOC7284011
XM_001127991LOC7284011
NM_174953ATP2A31
NM_174956ATP2A31
NM_174954ATP2A31
NM_174957ATP2A31
NM_174958ATP2A31
NM_005173ATP2A31
NM_174955ATP2A31
NM_152996ST6GALNAC31
NM_021116ADCY11
NM_0208831
NM_014030GIT11
NM_0010854541
NM_005313PDIA31
NM_020347LZTFL11
NM_016820OGG11
NM_002542OGG11
NM_016819OGG11
NM_020374C12orf41
NM_018170P15RS1
NM_032801JAM31
NM_000799EPO1
NM_004297GNA141
NM_018000MREG1
NM_198526ZNF7101
NM_007117TRH1
NM_031445AMMECR1L1
NM_0010853751
NM_017824MARCH51
NM_016282AK31
NM_153034ZNF4881
NM_025000C2orf371
NM_002214ITGB81
NM_138479C1orf2131
NM_018370DRAM1
NM_148911CHRFAM7A1
NM_139320CHRFAM7A1
XM_001134381LOC7301591
XM_001134078LOC7319481
NM_015471NSL11
NM_001042549NSL11
NM_015458MTMR91
NM_144508CASC51
NM_170589CASC51
NM_024086METT10D1
NM_138347ZNF5511
NM_018017C10orf1181
NM_178175LHFPL11
NM_003921BCL101
NM_016073HDGFRP31
NM_004612TGFBR11
NM_144688FLJ326581
NM_001039591USP9X1
NM_001039590USP9X1
NM_001010846SHE1
NM_005399PRKAB21
NM_001010980C1orf1301
NM_016170TLX21
XM_001125098LOC7304171
NM_005840SPRY31
NM_004578RAB4A1
XM_938207LOC6491251
NM_005722ACTR21
NM_001005386ACTR21
NM_007280OIP51
NM_144576COQ10A1
NM_0010993371
NM_018373SYNJ2BP1
NM_016033FAM82B1
NM_201266NRP21
NM_003872NRP21
NM_201279NRP21
NM_153343ENPP61
NM_001017370LOC3879211
NM_001012754LOC3879211
NM_178568RTN4RL11
NM_001007538TMEM461
NM_174910TCTE31
NM_052840BRUNOL61
NM_020357PCNP1
NM_199144UBE2V11
NM_003349Kua-UEV1
NM_199203Kua-UEV1
NM_021988UBE2V11
NM_022442UBE2V11
NM_017738C9orf391
NM_0208461
NM_006100ST3GAL61
NM_018265C1orf1061
NM_153260LRRC571
NM_014674EDEM11
NM_000777CYP3A51
NM_002662PLD11
NM_001009555SH3D191
NM_014071NCOA61
NM_001083625ANKRD121
NM_015208ANKRD121
NM_148174AZIN11
NM_015878AZIN11
NM_005065SEL1L1
NM_001001420SMAD51
NM_001001419SMAD51
NM_005903SMAD51
NM_014764DAZAP21
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_001981EPS151
NM_014395DAPP11
NM_007374SIX61
NM_005578LPP1
NM_177531PKHD1L11
NM_018301RBM411
NM_021961TEAD11
NM_005506SCARB21
NM_019556MOSPD11
NM_183381RNF131
NM_183384RNF131
NM_007282RNF131
NM_183383RNF131
NM_002160TNC1
NM_0010994041
NM_198056SCN5A1
NM_0010994051
NM_000335SCN5A1
NM_000921PDE3A1
NM_006016CD1641
NM_001001556GALK21
NM_002044GALK21

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317