VIRsiRNAdb

SpecificityServer - An siRNA design program for determining siRNA specificity
Automatic recommendation
Warning - siRNA is specific for only the antisense (guide) strand

57 hits were found for GGUACAACAUCAUCAACUU (33 guide strand hits and 24 sense strand hits.)

Hits to Guide strand

Accession

Gene

Start

End

Details of mismatches

Spec. Score

Mismatches

Contiguous

Jackson style specificity

Hits similar gene

HSP Score

HSP % Identity

HSP length

Gene Length

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

NR_001282

PCDHB19P

1066

1084

a

G

U

A

C

A

A

C

A

U

C

A

c

C

A

A

C

a

c

79

4

11

false

<90%

4613

NM_001103

ACTN2

2218

2236

a

G

c

A

C

A

A

C

A

U

C

A

U

C

A

A

C

U

a

73

3

15

bc

false

<90%

4181

NM_002208

ITGAE

1273

1291

G

G

U

A

C

A

A

C

A

U

C

A

U

C

A

g

C

a

U

71

2

15

c

false

<90%

3927

NM_022111

CLSPN

4318

4336

u

u

U

A

C

A

A

C

A

U

C

A

a

C

A

A

C

U

c

71

4

10

false

<90%

4379

NM_138318

KCNK10

1456

1474

a

G

g

A

C

A

A

C

A

U

C

A

U

C

A

A

C

a

a

70

4

14

c

false

<90%

2401

NM_138317

KCNK10

1539

1557

a

G

g

A

C

A

A

C

A

U

C

A

U

C

A

A

C

a

a

70

4

14

c

false

<90%

2484

NM_021161

KCNK10

1771

1789

a

G

g

A

C

A

A

C

A

U

C

A

U

C

A

A

C

a

a

70

4

14

c

false

<90%

2710

XM_942459

LOC652798

1625

1643

u

c

a

A

C

A

A

C

A

U

C

A

U

C

A

A

C

c

U

64

4

14

c

false

<90%

1815

NM_020393

PGLYRP4

1147

1165

u

G

U

A

C

A

A

C

A

U

C

A

U

C

A

g

C

a

c

64

4

14

c

false

<90%

1853

NM_001005337

PKP1

2242

2260

u

c

a

A

C

A

A

C

A

U

C

A

U

C

A

A

C

c

U

64

4

14

c

false

<90%

5388

NM_000299

PKP1

2305

2323

u

c

a

A

C

A

A

C

A

U

C

A

U

C

A

A

C

c

U

64

4

14

c

false

<90%

5451

XM_001126252

LOC727965

431

449

G

c

a

A

C

A

A

C

A

U

C

A

U

C

A

A

C

a

c

61

4

14

c

false

<90%

843

NM_212539

PRKCD

1269

1287

a

G

U

g

C

A

A

C

A

U

C

A

a

C

A

A

C

U

U

50

3

8

false

<90%

2738

NM_006254

PRKCD

1381

1399

a

G

U

g

C

A

A

C

A

U

C

A

a

C

A

A

C

U

U

50

3

8

false

<90%

2850

NM_152336

AGBL1

1882

1900

a

c

U

u

C

A

A

C

A

U

C

A

U

C

A

A

C

U

g

44

4

14

bc

false

<90%

3493

NM_005955

MTF1

161

179

a

c

a

A

C

A

A

C

A

U

C

A

U

C

u

A

C

U

U

42

4

11

c

false

<90%

7986

XR_016445

LOC392538

730

748

a

G

a

u

C

A

A

C

A

U

C

A

U

C

A

A

C

U

c

36

4

14

bc

false

<90%

914

XR_018555

LOC392538

730

748

a

G

a

u

C

A

A

C

A

U

C

A

U

C

A

A

C

U

c

36

4

14

bc

false

<90%

914

NM_017789

SEMA4C

1293

1311

c

c

g

A

C

A

A

C

A

U

C

c

U

C

A

A

C

U

U

33

4

8

false

<90%

3537

NM_017539

DNAH3

5225

5243

a

G

U

A

C

A

A

g

A

U

C

A

U

C

A

A

C

c

c

28

4

9

c

false

<90%

12351

XR_015266

LOC286467

646

664

u

G

U

A

C

A

c

C

A

U

C

A

U

C

A

A

C

g

g

24

4

10

c

false

<90%

1466

XR_015395

LOC286467

646

664

u

G

U

A

C

A

c

C

A

U

C

A

U

C

A

A

C

g

g

24

4

10

c

false

<90%

1466

NM_053067

UBQLN1

653

671

G

u

U

A

C

u

A

C

A

U

C

A

U

C

A

A

C

U

c

20

3

12

bc

false

<90%

2354

NM_013438

UBQLN1

738

756

G

u

U

A

C

u

A

C

A

U

C

A

U

C

A

A

C

U

c

20

3

12

bc

false

<90%

3952

NM_002556

OSBP

3398

3416

G

G

U

A

u

A

A

C

A

U

C

A

U

C

A

A

g

U

g

20

3

11

c

false

<90%

5083

NM_020202

NIT2

943

961

u

c

U

A

C

A

A

C

A

U

a

A

U

C

A

A

C

U

c

20

4

8

c

false

<90%

1016

NM_015885

PCF11

3179

3197

G

G

g

A

C

A

A

C

A

U

a

A

U

C

A

A

C

U

U

19

2

8

c

false

<90%

5834

NM_015071

ARHGAP26

1882

1900

G

G

a

A

C

A

g

C

A

U

C

A

U

C

A

A

C

U

c

9

3

11

bc

false

<90%

9035

NM_002971

SATB1

2302

2320

a

G

U

A

C

A

c

C

A

U

C

A

U

C

A

A

g

U

U

8

3

9

c

false

<90%

3782

NM_001077501

LRRCC1

1670

1688

G

c

a

A

C

A

A

C

u

U

C

A

U

C

A

A

C

U

U

8

3

10

bc

false

<90%

3619

NM_033402

LRRCC1

1876

1894

G

c

a

A

C

A

A

C

u

U

C

A

U

C

A

A

C

U

U

8

3

10

bc

false

<90%

3825

XM_941646

LOC649371

216

234

u

G

U

A

C

g

A

C

A

U

C

u

U

C

A

A

C

U

U

0

3

7

false

<90%

1092

NM_170776

GPR97

202

220

u

G

U

A

C

g

A

C

A

U

C

u

U

C

A

A

C

U

U

0

3

7

false

<90%

2681

Hits to Sense strand

Accession

Gene

Start

End

Details of mismatches

Spec. Score

Mismatches

Contiguous

Jackson style specificity

Hits similar gene

HSP Score

HSP % Identity

HSP length

Gene Length

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

XM_939560

NBPF7

135

153

u

g

G

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

81

3

16

abc

false

<90%

1887

NM_001047980

NBPF7

135

153

u

g

G

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

81

3

16

abc

false

<90%

1887

NM_007202

AKAP10

1493

1511

g

A

u

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

g

73

3

15

bc

false

<90%

2929

NM_017440

MDM1

2608

2626

u

A

a

U

U

G

A

U

G

A

U

G

U

U

G

U

A

a

a

70

4

14

c

false

<90%

2936

XR_015405

LOC728895

327

345

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

1819

XM_001133092

LOC728912

584

602

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

2950

XM_001133097

LOC728912

584

602

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

3194

XM_001133188

LOC728936

68

86

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

4492

XM_001133155

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

4784

XM_001133176

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

4898

XM_001133169

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

4922

XM_001133179

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

5093

XM_001133191

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

5111

XR_015220

LOC730476

641

659

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

5174

XM_001133181

LOC728936

589

607

g

c

c

U

U

G

A

U

G

A

U

G

U

U

G

U

A

C

a

62

4

15

bc

false

<90%

5622

XR_015592

LOC729561

1070

1088

A

A

G

U

U

G

A

U

G

A

U

G

a

U

G

U

u

u

a

58

4

12

false

<90%

1478

XR_015583

LOC731731

1085

1103

A

A

G

U

U

G

A

U

G

A

U

G

a

U

G

U

u

u

a

58

4

12

false

<90%

1493

NM_001047160

NET1

352

370

A

A

G

a

U

G

A

U

G

A

U

G

U

U

G

U

A

a

g

55

3

13

c

false

<90%

3414

NM_001644

APOBEC1

553

571

c

u

G

U

g

G

A

U

G

A

U

G

U

U

G

U

A

C

g

30

4

13

bc

false

<90%

911

XM_001131192

LOC646520

553

571

A

A

G

U

U

G

A

U

G

A

U

G

U

U

a

a

g

g

C

23

4

14

c

false

<90%

690

NM_020792

AADACL1

705

723

A

A

a

U

U

c

A

U

G

A

U

G

U

U

G

U

A

C

g

12

3

12

bc

false

<90%

4289

NM_001081676

SCN3A

3775

3793

c

A

G

U

U

G

A

U

G

u

U

G

U

U

c

U

A

C

C

-9

3

8

c

false

<90%

8994

NM_001081677

SCN3A

3775

3793

c

A

G

U

U

G

A

U

G

u

U

G

U

U

c

U

A

C

C

-9

3

8

c

false

<90%

8994

NM_006922

SCN3A

3922

3940

c

A

G

U

U

G

A

U

G

u

U

G

U

U

c

U

A

C

C

-9

3

8

c

false

<90%

9141

---

3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1022
View matched accessions

3 prime seed match details

Accession	Gene name	Hits to this gene
NM_004230	EDG5	3
NM_003966	SEMA5A	3
NM_003594	TTF2	3
NM_014904	RAB11FIP2	2
NM_001079526	IKZF2	2
NM_016260	IKZF2	2
NM_001104546		2
NM_173511	ALS2CR13	2
NM_182943	PLOD2	2
NM_000935	PLOD2	2
NM_017523	XAF1	2
NM_199139	XAF1	2
NM_021203	SRPRB	2
NM_022465	IKZF4	2
NM_001037172	ACPL2	2
NM_152282	ACPL2	2
NM_005088	CXYorf3	2
NM_017637	BNC2	2
NM_007195	POLI	2
XM_927936	LOC644841	2
XM_935685	LOC641933	2
XM_938176	LOC644841	2
NM_018225	SMU1	2
NM_018941	CLN8	2
NM_005955	MTF1	2
NM_004863	SPTLC2	2
NM_016575	NT5DC3	2
NM_017705	PAQR5	2
NM_001104554		2
NM_021163	RBAK	2
NM_006281	STK3	2
NM_030648	SETD7	2
NM_004183	BEST1	2
NM_004028	AQP4	2
NM_001650	AQP4	2
NM_000875	IGF1R	2
NM_001030060	SAMD5	2
NM_006504	PTPRE	2
NM_130435	PTPRE	2
NM_001080437	SNED1	2
XM_940984	SNED1	2
NM_005056	JARID1A	2
NM_003679	KMO	2
NM_145207	SPATA5	2
NM_001858	COL19A1	2
NM_001102575		2
NM_004274	AKAP6	2
NM_007192	SUPT16H	2
NM_002737	PRKCA	2
NM_173065	IL28RA	2
NM_173064	IL28RA	2
NM_170743	IL28RA	2
NM_000134	FABP2	2
NM_023946	LYNX1	1
NM_020151	STARD7	1
NM_001031684	SFRS7	1
NM_177458	LYNX1	1
NM_153376	CCDC96	1
NM_031482	ATG10	1
NM_145283	C9orf121	1
NM_031914	SYT16	1
NM_001007097	NTRK2	1
NM_004085	TIMM8A	1
NM_004212	SLC28A2	1
NM_014253	ODZ1	1
NM_006449	CDC42EP3	1
NM_015247	CYLD	1
NM_001042412	CYLD	1
NM_001042355	CYLD	1
NM_001011667	CHCHD7	1
NM_001011670	CHCHD7	1
NM_001011669	CHCHD7	1
XM_944271	USP45	1
XM_939661	USP45	1
XM_944273	USP45	1
XM_944255	USP45	1
XM_931094	USP45	1
XM_931124	USP45	1
XM_931115	USP45	1
NM_001080481	USP45	1
NM_032682	FOXP1	1
NM_001106	ACVR2B	1
NM_024949	WWC2	1
NM_001547	IFIT2	1
NM_000960	PTGIR	1
NM_148571	MRPL27	1
NM_002421	MMP1	1
NM_173798	ZCCHC12	1
NM_007153	ZNF208	1
NM_033012	TNFSF11	1
NM_003701	TNFSF11	1
NM_004161	RAB1A	1
NM_001013655	LOC389834	1
XM_001125792	LOC727834	1
XM_926013	LOC642398	1
NM_000632	ITGAM	1
NM_152265	BTF3L4	1
NM_017416	IL1RAPL2	1
NM_032424	KIAA1826	1
NM_173478	CNTD1	1
NM_013354	CNOT7	1
NM_025000	C2orf37	1
NM_004326	BCL9	1
NM_001008539	SLC7A2	1
NM_003046	SLC7A2	1
NM_020803	KLHL8	1
NM_014333	CADM1	1
NM_001098517		1
NM_004786	TXNL1	1
NM_023930	KCTD14	1
NM_006933	SLC5A3	1
NM_194282	LIN54	1
NM_001097620		1
XM_936809	LOC342918	1
XM_292779	LOC342918	1
NM_152293		1
NM_024644	C14orf169	1
NM_012194		1
NM_024565	CCNJL	1
NM_152498	WDR65	1
NM_018228	C14orf115	1
NM_198150	ARSK	1
NM_006965	ZNF24	1
NM_000529	MC2R	1
XM_938665	USP6NL	1
NM_001080491	USP6NL	1
XM_927409	USP6NL	1
XM_943800	USP6NL	1
NM_018650	MARK1	1
NM_018234	STEAP3	1
NM_001008410	STEAP3	1
NM_182915	STEAP3	1
NM_025015	HSPA12A	1
NM_005669	REEP5	1
NM_024052	C17orf39	1
NM_207322	NLF1	1
NM_153338	GGT6	1
NM_004869	VPS4B	1
NM_003884	PCAF	1
NM_152391	PQLC3	1
NM_013322	SNX10	1
NM_020886	USP28	1
XM_941655	LOC339804	1
XM_291016	LOC339804	1
NM_018711	SVOP	1
NM_178564	NRBP2	1
NM_001025249	DUT	1
NM_001025248	DUT	1
NM_001948	DUT	1
NM_004873	BAG5	1
NM_001015049	BAG5	1
NM_001015048	BAG5	1
NM_080283	ABCA9	1
NM_005082	TRIM25	1
NM_183078	RNF8	1
NM_003958	RNF8	1
NM_080742	B3GAT2	1
NM_001949	E2F3	1
NM_145276	ZNF563	1
NM_017860	C1orf56	1
NM_031448	C19orf12	1
NM_001031726	C19orf12	1
NM_001104544		1
NM_001104545		1
NM_017938	FAM70A	1
XM_943592	LOC649130	1
XM_931990	LOC644058	1
NM_138723	BCL2L14	1
NM_030766	BCL2L14	1
NM_138722	BCL2L14	1
NM_006699	MAN1A2	1
NM_001097611		1
NM_001004310	FCRL6	1
NM_014077	FAM32A	1
NM_198584	CA13	1
NM_001025091	ABCF1	1
NM_001090	ABCF1	1
NM_021200	PLEKHB1	1
NM_015995	KLF13	1
NM_198836	ACACA	1
NM_198837	ACACA	1
NM_198834	ACACA	1
NM_198838	ACACA	1
NM_198839	ACACA	1
NM_001610	ACP2	1
NM_013437	LRP12	1
NM_001852	COL9A2	1
NM_001111113		1
NM_005339	HIP2	1
NM_001111112		1
NM_004397	DDX6	1
NM_000332	ATXN1	1
NM_033437	PDE5A	1
NM_001083	PDE5A	1
NM_033430	PDE5A	1
NM_014913	ZNF508	1
NM_004586	RPS6KA3	1
NM_012197	RABGAP1	1
NM_001008801	ZNF468	1
NM_199132	ZNF468	1
NM_005242	F2RL1	1
XM_001131899	LOC283904	1
NM_001754	RUNX1	1
NM_001001890	RUNX1	1
NM_015365	AMMECR1	1
NM_001025580	AMMECR1	1
NM_001024455	RGAG4	1
NM_014594	ZNF354C	1
NM_153184	CADM2	1
NM_022770	GINS3	1
NM_002959	SORT1	1
NM_015251	ASCIZ	1
NM_006969	ZNF28	1
XM_496634	LOC344787	1
NM_001004301	ZNF813	1
NM_001008401	ZNF761	1
NM_017779	DEPDC1	1
NM_012120	CD2AP	1
NM_002310	LIFR	1
NM_006113	VAV3	1
NM_001079874	VAV3	1
NM_001013717	LOC441108	1
NM_032339	C17orf37	1
NM_181719	TMCO4	1
NM_001008727	ZNF121	1
NM_018295	TMEM140	1
NM_173536	GABRG1	1
NM_005717	ARPC5	1
NM_198968	DZIP1	1
NM_014934	DZIP1	1
NM_014517	UBP1	1
NM_005197	CHES1	1
NM_001085471		1
NM_152388	ALS2CR4	1
NM_001044385	ALS2CR4	1
NM_174916	UBR1	1
NM_005902	SMAD3	1
NM_001014797	KCNMA1	1
NM_021165	FAM5B	1
NM_006036	PREPL	1
NM_001042386	PREPL	1
NM_001042385	PREPL	1
NM_052897	MBD6	1
NM_007102	GUCA2B	1
NM_181351	NCAM1	1
NM_000615	NCAM1	1
NM_201521	KLC4	1
NM_201522	KLC4	1
NM_201523	KLC4	1
NM_024770	METTL8	1
NM_020728	FAM62B	1
NM_015852	ZNF117	1
NM_015569	DNM3	1
NM_002199	IRF2	1
NM_032115	KCNK16	1
XM_942240	LOC650557	1
NM_001009565	CDKL4	1
NM_001009554	MFAP3L	1
NM_021647	MFAP3L	1
NM_005229	ELK1	1
NM_001008392	CTDSPL	1
NM_005808	CTDSPL	1
NM_024627	C22orf29	1
NM_194439	RNF212	1
NM_030767	AKNA	1
NM_030929	KAZALD1	1
NM_023929	ZBTB10	1
NM_001105539		1
NM_006192	PAX1	1
NM_173698	RP1-32F7.2	1
XM_001130955	LOC730347	1
XM_001127355	LOC728377	1
NM_015210	KIAA0802	1
NM_015154	MESDC2	1
NM_003281	TNNI1	1
NM_012397	SERPINB13	1
NM_001099692		1
NM_005575	LNPEP	1
NM_175920	LNPEP	1
NM_017741	C4orf30	1
XM_929878	LOC646915	1
NM_198406	PAQR6	1
NM_024897	PAQR6	1
NM_001101801		1
NM_001101800		1
NM_016603	C5orf5	1
NM_020944	GBA2	1
NM_004985	KRAS	1
NM_033360	KRAS	1
NM_001080529	WIPF3	1
XM_939315	LOC644150	1
XM_935705	LOC644150	1
XM_001130020	KIAA1147	1
XM_001130081	KIAA1147	1
NM_001080392	KIAA1147	1
NM_015215	CAMTA1	1
XM_001126203	LOC727945	1
NM_001003674	C18orf1	1
NM_181483	C18orf1	1
NM_181481	C18orf1	1
NM_001003675	C18orf1	1
NM_004338	C18orf1	1
NM_181482	C18orf1	1
NM_001025247	TAF5L	1
NM_004898	CLOCK	1
NM_014906	PPM1E	1
NM_018571	ALS2CR2	1
XM_942407	LOC650168	1
XM_930312	LOC644462	1
NM_018268	WDR41	1
NM_198486	RPL7L1	1
NM_030755	TXNDC1	1
NM_032490	C14orf142	1
NM_001009567	MRC1L1	1
NM_033255	EPSTI1	1
NM_001002264	EPSTI1	1
NM_001010887	ASAH3L	1
NM_024738	C12orf49	1
NM_001006623	WDR33	1
NM_000430	PAFAH1B1	1
NM_018298	MCOLN3	1
NM_004866	SCAMP1	1
NM_022776	OSBPL11	1
NM_177966	2'-PDE	1
NM_014381	MLH3	1
NM_001040108	MLH3	1
NM_014646	LPIN2	1
NM_033505	SELI	1
NM_005036	PPARA	1
NM_001001928	PPARA	1
NM_004577	PSPH	1
NM_022171	TCTA	1
NM_003419	ZNF345	1
NM_018509	LRRC59	1
NM_138415	PHF21B	1
XM_001126898	LOC728221	1
NM_152487	TMEM56	1
NM_032810	ATAD1	1
NM_020194	C2orf33	1
NM_203446	SYNJ1	1
NM_001742	CALCR	1
NM_001001412	FAM26C	1
NM_014839	LPPR4	1
NM_001018067	SERBP1	1
NM_015640	SERBP1	1
NM_001018069	SERBP1	1
NM_001018068	SERBP1	1
NM_021239	RBM25	1
NM_021252	RAB18	1
NM_018293	ZNF654	1
XM_001126706	ZNF654	1
NM_018976	SLC38A2	1
XM_001134034	LOC729744	1
NM_001048249	DKFZP686E2158	1
NM_015474	SAMHD1	1
NM_022898	BCL11B	1
NM_138576	BCL11B	1
NM_004232	SOCS6	1
NM_001012515	FECH	1
NM_000140	FECH	1
NM_006996	SLC19A2	1
NM_001031848	SERPINB8	1
NM_001001709	FLJ45537	1
NM_017782		1
NM_006415	SPTLC1	1
NM_024721	ZFHX4	1
NM_002438	MRC1	1
NM_001080497	MEGF9	1
XM_936860	MEGF9	1
NM_014584	ERO1L	1
NM_001029875	RGS7BP	1
NM_144721	THAP6	1
NM_003352	SUMO1	1
NM_001005782	SUMO1	1
NM_001005781	SUMO1	1
NM_014388	C1orf107	1
NM_001010846	SHE	1
NM_005126	NR1D2	1
XM_001130839	NR1D2	1
NM_016488	PPHLN1	1
NM_001454	FOXJ1	1
NM_019090		1
NM_030962	SBF2	1
NM_006380	APPBP2	1
NM_033132	ZIC5	1
NM_004788	UBE4A	1
NM_003983	SLC7A6	1
NM_001076785	SLC7A6	1
NM_002109	HARS	1
NM_001024460	VNN3	1
NM_078625	VNN3	1
NM_002170	IFNA8	1
NM_181809	BMP8A	1
NM_004171	SLC1A2	1
NM_003483	HMGA2	1
NM_181892	UBE2D3	1
XM_001134421	C1orf152	1
NM_020703	AMIGO1	1
NM_022778	CCDC21	1
NM_178562	TSPAN33	1
NM_001042603	JARID1A	1
NM_033429	CALML4	1
NM_001031733	CALML4	1
NM_014911	AAK1	1
NM_181553	CMTM3	1
NM_001048251	CMTM3	1
NM_181554	CMTM3	1
NM_144601	CMTM3	1
XM_371461	KIAA1671	1
XM_938689	KIAA1671	1
NM_005375	MYB	1
NM_001079878	CNGA3	1
NM_001298	CNGA3	1
NM_024947	PHC3	1
NM_024416	OGN	1
NM_014057	OGN	1
NM_033014	OGN	1
NM_020861	ZBTB2	1
NM_002901	RCN1	1
NM_007309	DIAPH2	1
NM_017540	GALNT10	1
NM_198321	GALNT10	1
NM_053002	MED12L	1
NM_006995	BTN2A2	1
NM_181531	BTN2A2	1
XM_928252	LOC645212	1
XM_939117	LOC645212	1
XM_379228	LOC401093	1
XM_944985	LOC401093	1
NM_005940	MMP11	1
NM_032314	COQ5	1
XM_291671	RBM20	1
XM_939337	RBM20	1
NM_018469	TEX2	1
NM_022091	ASCC3	1
NM_004965	HMGN1	1
XM_001131454	LOC731104	1
XM_001132231	LOC728851	1
XM_938941	LOC643790	1
XM_927071	LOC643790	1
NM_001009909	LUZP2	1
NM_004603	STX1A	1
NM_201252	AFAR3	1
NM_004799	ZFYVE9	1
NM_007324	ZFYVE9	1
NM_004124	GMFB	1
NM_030817	APOLD1	1
NM_022725	FANCF	1
NM_003672	CDC14A	1
NM_176871	PDLIM2	1
NM_015015	JMJD2B	1
NM_002861	PCYT2	1
NM_000256	MYBPC3	1
NM_016436	PHF20	1
XM_001128974	DDB1	1
NM_007214	SEC63	1
NM_152597	FSIP1	1
NM_175571	GIMAP8	1
NM_005099	ADAMTS4	1
NM_016946	F11R	1
NM_003189	TAL1	1
NM_152673	MUC20	1
NM_001098516		1
NM_001100398		1
NM_015085	GARNL4	1
NM_022965	FGFR3	1
NM_000142	FGFR3	1
XM_944216	LOC650484	1
XM_374162	LOC389370	1
NM_016304	C15orf15	1
NM_003445	ZNF155	1
NM_198089	ZNF155	1
NM_032800	C1orf198	1
NM_001011537	FYTTD1	1
NM_032288	FYTTD1	1
NM_017610	RNF111	1
NM_178342	C3orf35	1
NM_018241	TMEM34	1
NM_001018058	TFEC	1
NM_012252	TFEC	1
XM_940430	LOC648852	1
NM_198493	ANKRD45	1
NM_206996	SPAG17	1
NM_032961	PCDH10	1
NM_001032363	C1orf151	1
NM_173588	IGSF22	1
XM_938268	TBX18	1
NM_001080508	TBX18	1
NM_152772	TCP11L2	1
NM_006948	STCH	1
NM_004279	PMPCB	1
NM_152263	TPM3	1
NM_001099334		1
NM_020805	KLHL14	1
NM_006014	LAGE3	1
NM_005160	ADRBK2	1
NM_016641	MIR16	1
NM_020445	ACTR3B	1
NM_001040135	ACTR3B	1
NM_001008567	TSC1	1
NM_025153		1
NM_052917	GALNT13	1
NM_001432	EREG	1
NM_207333	ZNF320	1
NM_001025356	TMEM16F	1
NM_015011	MYO16	1
NM_018639	WSB2	1
NM_019072	SGTB	1
NM_005765	ATP6AP2	1
NM_020718	USP31	1
XM_001126375	LOC727922	1
XM_001126361	LOC727922	1
XM_001126406	LOC727922	1
XM_001126391	LOC727922	1
XM_001126417	LOC727922	1
NM_004084	DEFA1	1
NM_015177		1
NM_013943	CLIC4	1
NM_005909	MAP1B	1
NM_172071	RC3H1	1
NM_013435	RAX	1
NM_003377	VEGFB	1
XM_001128909	VEGFB	1
NM_015393	DKFZP564O0823	1
NM_000259	MYO5A	1
NM_020242	KIF15	1
NM_000208	INSR	1
NM_001079817	INSR	1
NM_000163	GHR	1
NM_001017915	INPP5D	1
NM_005541	INPP5D	1
XM_001128600	LOC731150	1
XM_001128744	LOC728896	1
NM_024080	TRPM8	1
NM_018351	FGD6	1
NM_001102658		1
NM_005891	ACAT2	1
NM_002868	RAB5B	1
NM_007147	ZNF175	1
NM_024551	ADIPOR2	1
NM_032632	PAPOLA	1
NM_031936	GPR61	1
NM_000166	GJB1	1
NM_001097642		1
NM_000268	NF2	1
NM_016418	NF2	1
NM_181832	NF2	1
NM_181828	NF2	1
NM_181829	NF2	1
NM_181833	NF2	1
NM_181830	NF2	1
NM_006038	SPATA2	1
NM_199440	HSPD1	1
NM_002156	HSPD1	1
NM_175852	TXLNA	1
NM_175069	APTX	1
NM_145259	ACVR1C	1
NM_001111031		1
NM_001111033		1
NM_001111032		1
XM_001130499	LOC731705	1
XM_001131070	LOC729697	1
NM_203394	E2F7	1
NM_015493	ANKRD25	1
NM_014930	ZNF510	1
NM_001093755		1
NM_001093756		1
NM_024941	FLJ13611	1
NM_206926	SEPN1	1
NM_020451	SEPN1	1
XM_001127597	FLJ32810	1
XM_001127587	FLJ32810	1
XM_925815	FLJ32810	1
XM_001127637	FLJ32810	1
XM_001127623	FLJ32810	1
NM_019891	ERO1LB	1
NM_015246	MGRN1	1
NM_001693	ATP6V1B2	1
NM_001001668	ZNF470	1
NM_015275	KIAA1033	1
NM_022048	CSNK1G1	1
NM_001626	AKT2	1
NM_171827	CD8A	1
NM_001768	CD8A	1
XM_943589	LOC647946	1
NM_173476	CCDC78	1
NM_001029955	WDR21B	1
NM_001037163	MGC12966	1
NM_015503	SH2B1	1
NM_000165	GJA1	1
NM_033389	SSH2	1
NM_020772	NUFIP2	1
NM_006517	SLC16A2	1
XM_927706	LOC644591	1
XM_927767	LOC653505	1
XM_928338	LOC653598	1
NM_145173	DIRAS1	1
NM_020466	LYRM2	1
NM_006315	PCGF3	1
NM_022143	LRRC4	1
NM_001033056	GLUL	1
NM_002065	GLUL	1
NM_001033044	GLUL	1
NM_000461	THRB	1
NM_001031746	C10orf72	1
NM_002581	PAPPA	1
NM_000868	HTR2C	1
NM_017902	HIF1AN	1
NM_024871	MAP6D1	1
NM_002832	PTPN7	1
NM_080588	PTPN7	1
NM_002383	MAZ	1
NM_001042539	MAZ	1
NM_178568	RTN4RL1	1
NM_001077484	SLC38A1	1
NM_030674	SLC38A1	1
NM_005786	TSHZ1	1
NM_145912	NFAM1	1
NM_003449	TRIM26	1
NM_173667	FLJ37543	1
NM_030762	BHLHB3	1
XM_039908	LOC91664	1
NM_148170	CTSC	1
NM_001112800		1
NM_021097	SLC8A1	1
NM_001112801		1
NM_001112802		1
NM_032505	KBTBD8	1
NM_018899	PCDHAC2	1
NM_018900	PCDHA1	1
NM_018902	PCDHA11	1
NM_031849	PCDHA6	1
NM_018905	PCDHA2	1
NM_018904	PCDHA13	1
NM_031860	PCDHA10	1
NM_018907	PCDHA4	1
NM_018909	PCDHA6	1
NM_018910	PCDHA7	1
NM_018911	PCDHA8	1
NM_018906	PCDHA3	1
NM_018903	PCDHA12	1
NM_018898	PCDHAC1	1
NM_031857	PCDHA9	1
NM_031411	PCDHA1	1
NM_018908	PCDHA5	1
NM_018901	PCDHA10	1
NM_001124	ADM	1
NM_001543	NDST1	1
NM_001008537	KIAA2022	1
NM_001717	BNC1	1
NM_031435	THAP2	1
NM_015226	KIAA0350	1
NM_199169	TMEPAI	1
NM_199170	TMEPAI	1
NM_199171	TMEPAI	1
NM_020182	TMEPAI	1
NM_173554	C10orf107	1
NM_001099289		1
NM_207012	AP3M1	1
NM_012095	AP3M1	1
NM_144718	CCDC52	1
XM_378876	LOC149351	1
XM_943142	LOC149351	1
NM_017723	C9orf167	1
NM_017842	FLJ20489	1
NM_015090	NFASC	1
NM_145341	PDCD4	1
NM_014456	PDCD4	1
NM_000087	CNGA1	1
NM_017542	POGK	1
NM_004734	DCLK1	1
NM_014007	ZBTB43	1
NM_133455	EMID1	1
NM_016239	MYO15A	1
NM_206909	PSD3	1
NM_015310	PSD3	1
NM_175061	JAZF1	1
NM_001455	FOXO3A	1
NM_201559	FOXO3A	1
NM_020205	OTUD7B	1
NM_015252	EHBP1	1
NM_000033	ABCD1	1
NM_006721	ADK	1
NM_001123	ADK	1
NM_016233	PADI3	1
NM_001105537		1
NM_005081	ZNF142	1
NM_001009894	C12orf29	1
NM_145176	SLC2A12	1
XM_931376	SETD5	1
XM_944260	SETD5	1
XM_931478	SETD5	1
XM_944280	SETD5	1
XM_931417	SETD5	1
XM_944276	SETD5	1
XM_939712	SETD5	1
NM_001080517	SETD5	1
XM_944303	SETD5	1
XM_931455	SETD5	1
XM_931447	SETD5	1
XM_944298	SETD5	1
XM_944295	SETD5	1
XM_931444	SETD5	1
NM_024776		1
NM_005432	XRCC3	1
NM_001100119		1
NM_001100118		1
NM_001083962		1
NM_003199	TCF4	1
NM_001008390	CGGBP1	1
NM_003663	CGGBP1	1
XM_001129158	LIMS1	1
NM_014418	TCL6	1
NM_012468	TCL6	1
NM_002119	HLA-DOA	1
NM_025077	TOE1	1
NM_020859	SHROOM3	1
XM_001126195	LOC727942	1
NM_001039771	CBLN3	1
NM_016604	JMJD1B	1
NM_025134	CHD9	1
NM_015046	SETX	1
NM_023934	FUNDC2	1
NM_022739	SMURF2	1
NM_024803	TUBAL3	1
NM_182724	CREM	1
NM_182772	CREM	1
NM_181571	CREM	1
NM_182853	CREM	1
NM_182718	CREM	1
NM_182771	CREM	1
NM_182722	CREM	1
NM_183060	CREM	1
NM_182717	CREM	1
NM_182770	CREM	1
NM_182721	CREM	1
NM_183012	CREM	1
NM_182719	CREM	1
NM_182725	CREM	1
NM_183011	CREM	1
NM_182850	CREM	1
NM_182723	CREM	1
NM_182720	CREM	1
NM_182769	CREM	1
NM_183013	CREM	1
NM_020704	FAM40B	1
NM_003074	SMARCC1	1
NM_018660	ZNF395	1
NM_138385	TMEM129	1
NM_139283	PPTC7	1
NM_001102396		1
NM_025073	SIKE	1
NM_004744	LRAT	1
XM_001131395	LOC729810	1
XM_001126629	LOC730634	1
NM_004999	MYO6	1
NM_006187	OAS3	1
NM_016458	C8orf30A	1
XM_001126758	LOC728071	1
NM_001560	IL13RA1	1
NM_194248	OTOF	1
NM_004802	OTOF	1
NM_194322	OTOF	1
NM_203329	CD59	1
NM_203331	CD59	1
NM_203330	CD59	1
NM_000611	CD59	1
NM_001008493	ENAH	1
NM_018212	ENAH	1
NM_001005473	PLCXD3	1
NM_006300	ZNF230	1
NM_001005502	CPM	1
NM_198320	CPM	1
NM_001874	CPM	1
NM_003048	SLC9A2	1
NM_001423	EMP1	1
NM_002126	HLF	1
NM_001099222		1
NM_001099223		1
NM_025103	IFT74	1
NM_001010853	ACY1L2	1
NM_001035267	RPL41	1
NM_021104	RPL41	1
NM_000314	PTEN	1
NM_000396	CTSK	1
NM_007035	KERA	1
NM_001421	ELF4	1
NM_004747	DLG5	1
NM_201542	MED8	1
NM_001012756	ZNF260	1
NM_016042	EXOSC3	1
NM_001002269	EXOSC3	1
NM_024607	PPP1R3B	1
XM_944677	LOC338758	1
XM_931359	LOC338758	1
NM_021964	ZNF148	1
NM_021258	IL22RA1	1
NM_006158	NEFL	1
NM_005199	CHRNG	1
NM_004655	AXIN2	1
NM_014805	EPM2AIP1	1
NM_001039712	DEDD	1
NM_032998	DEDD	1
NM_001039711	DEDD	1
NM_017672	TRPM7	1
NM_006546	IGF2BP1	1
NM_014607	UBXD2	1
NM_203463	LASS6	1
NM_001033047	NPNT	1
NM_145168	HSPC105	1
NM_025106	SPSB1	1
NM_001098512		1
NM_006258	PRKG1	1
NM_020407	RHBG	1
NM_014080	DUOX2	1
NM_016351	ADAM22	1
NM_021723	ADAM22	1
NM_021722	ADAM22	1
NM_021145	DMTF1	1
NM_014682	ST18	1
NM_004733	SLC33A1	1
NM_015123		1
NM_032487	ARPM1	1
NM_001039479	KIAA0317	1
NM_198715	PTGER3	1
NM_207325	DPY19L3	1
NM_002182	IL1RAP	1
NM_152400	C4orf32	1
NM_207411	XKR5	1
XM_001133703	LOC731497	1
XM_001133652	LOC729363	1
NM_001029998	SLC10A7	1
NM_015336	ZDHHC17	1
NM_002210	ITGAV	1
NM_052885	SLC2A13	1
NM_013989	DIO2	1
NM_001007023	DIO2	1
NM_000793	DIO2	1
NM_001098484		1
NM_003759	SLC4A4	1
NM_004566	PFKFB3	1
NM_000046	ARSB	1
NM_145261	DNAJC19	1
NM_015221	DNMBP	1
NM_004827	ABCG2	1
NM_012081	ELL2	1
NM_014866	KIAA0310	1
NM_018181	ZNF532	1
NM_006588	SULT1C4	1
NM_000340	SLC2A2	1
NM_004959	NR5A1	1
NM_015036		1
NM_001007176	C8orf22	1
NM_024512	LRRC2	1
NM_002357	MXD1	1
NM_003005	SELP	1
NM_001289	CLIC2	1
NM_016231	NLK	1
NM_001004302	ZNF783	1
NM_015127	CLCC1	1
NM_001048210	CLCC1	1
NM_001098801		1
NM_152352	C18orf19	1
NM_012249	RHOQ	1
NM_015050	KIAA0082	1
NM_006378	SEMA4D	1
NM_004878	PTGES	1
NM_000368	TSC1	1
NM_000138	FBN1	1
NM_001013659	ZNF793	1
NM_181705	LYRM7	1
NM_001430	EPAS1	1
NM_006100	ST3GAL6	1
NM_005060	RORC	1
NM_001001523	RORC	1
NM_003350	UBE2V2	1
NM_017881	C9orf95	1
NM_182972	IRF2BP2	1
NM_001077397	IRF2BP2	1
NM_001109662		1
NM_014910	ZNF507	1
NM_001013640	LOC388503	1
NM_014819	PJA2	1
NM_017629	EIF2C4	1
NM_002053	GBP1	1
NM_022787	NMNAT1	1
NM_004464	FGF5	1
NM_033143	FGF5	1
NM_178033	CYP4X1	1
NM_019001	XRN1	1
NM_001042604	XRN1	1
NM_052941	GBP4	1
NM_001079539	XBP1	1
NM_005080	XBP1	1
NM_007137	ZNF81	1
NM_002268	KPNA4	1
NM_019087	ARL15	1
NM_000555	DCX	1
NM_178152	DCX	1
NM_178153	DCX	1
NM_178151	DCX	1
NM_014413	EIF2AK1	1
NM_001039585	PTGFR	1
NM_000959	PTGFR	1
NM_144618	MGC29891	1
NM_032390	MKI67IP	1
XM_376795	FLJ45872	1
XM_940037	FLJ45872	1
NM_013231	FLRT2	1
NM_001048209	HNT	1
NM_016522	HNT	1
NM_183413	FBXO44	1
NM_033182	FBXO44	1
NM_001014765	FBXO44	1
NM_183412	FBXO44	1
NM_006502	POLH	1
NM_019101	APOM	1
NM_001006657	WDR35	1
NM_020779	WDR35	1
NM_033550	TP53RK	1
NM_178585	WDFY3	1
NM_014991	WDFY3	1
NM_002703	PPAT	1
NM_147134	NFX1	1
NM_015059	TLN2	1
NM_001830	CLCN4	1
NM_012137	DDAH1	1
NM_006003	UQCRFS1	1
NM_207361	FREM2	1
NM_001364	DLG2	1
NM_173672	PPIL6	1
NM_001111298		1
NM_000909	NPY1R	1
NM_020341	PAK7	1
NM_177990	PAK7	1
NM_198461	LONRF2	1
NM_078628	MSL3L1	1
NM_004337	OSGIN2	1
NM_025128	MUS81	1
NM_020844	KIAA1456	1
NM_001099677		1
NM_175921	LOC285636	1
NM_001776	ENTPD1	1
NM_001098175		1
NM_172214	CAMKK2	1
NM_172215	CAMKK2	1
NM_001102603		1
NM_198893	ZNF160	1
NM_033288	ZNF160	1
NM_032943	SYTL2	1
NM_206929	SYTL2	1
NM_206930	SYTL2	1
NM_206927	SYTL2	1
NM_032379	SYTL2	1
NM_206928	SYTL2	1
NM_194320	ZNF169	1
NM_014633	CTR9	1
NM_004857	AKAP5	1
NM_006526	ZNF217	1
NM_174978	C14orf39	1
NM_177405	CECR1	1
NM_017424	CECR1	1
NM_022080	NAPB	1
NM_005100	AKAP12	1
NM_144497	AKAP12	1
NM_145753	PHLDB2	1
NM_020905	RDH14	1
NM_012400	PLA2G2D	1
NM_206595	ESRRG	1
NM_001438	ESRRG	1
NM_206594	ESRRG	1
NM_005964	MYH10	1
NM_001043229	LOC751071	1
NM_001025433	NQO1	1
NM_000903	NQO1	1
NM_001025434	NQO1	1
NM_014822	SEC24D	1
NM_016516	VPS54	1
NM_001005739	VPS54	1
NM_001077691	ALG9	1
NM_001077692	ALG9	1
NM_024740	ALG9	1
NM_001077690	ALG9	1
NM_019067	GNL3L	1
NM_020747	ZNF608	1
NM_173470	TMEM32	1
NM_001026213	CYP11B1	1
NM_000497	CYP11B1	1
NM_022051	EGLN1	1
XM_001126207	LOC645974	1
NM_001012977	LOC340529	1
NM_001042506	LOC645974	1
XM_001130463	LOC645974	1
NM_024318	LILRA6	1
NM_018366	CNO	1
NM_000266	NDP	1
NM_001017992	DKFZp686D0972	1
NM_001033568	RHOT1	1
NM_001033566	RHOT1	1
NM_018307	RHOT1	1
NM_001037131	CENTG2	1
NM_014914	CENTG2	1
NM_032457	PCDH7	1
NM_030810	TXNDC5	1
NM_022085	TXNDC5	1
NM_153620	HOXA1	1
NM_005522	HOXA1	1
NM_006734	HIVEP2	1
NM_152765	C8orf46	1
NM_012281	KCND2	1
NM_194292	SASS6	1
NM_006393	NEBL	1
NM_001007245	IFRD1	1
NM_001550	IFRD1	1
NM_148674	SMC1B	1
NM_014395	DAPP1	1
NM_001079653	SDK1	1
NM_152744	SDK1	1
NM_001003940	BMF	1
NM_001003943	BMF	1
NM_001003942	BMF	1
NM_033503	BMF	1

---

Immunostimulatory motif search results

UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).

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Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

Parameter	Spec. Score cut-off	Colour	Comment
Hit to same gene		Colour	Hits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit	≥80	Colour	Hits are very likely to cause an off-target effect
Medium scoring hit	<80¸≥40	Colour	Hits with a small chance of causing an off target effect.
Low scoring hit		Colour	Hits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-off	Colour
Match	Colour
Wobble base pairs (G-U)	Colour
Critical bases (none)	Colour
0.6 bits	Colour
0.4 bits	Colour
0.2 bits	Colour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer

For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317