Predicted Off-targets for siRNA "ggaugauccugaugacuca" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

39 hits were found for GGAUGAUCCUGAUGACUCA (26 guide strand hits and 13 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_033272 KCNH7 2933 2951 aaAUGAUCCUGAaGACUCu71 4 10   false   <90%   4225
NM_031414 STK31 1983 2001 aGAUGAUCCUGAUGgCUCu68 3 13 c false   <90%   3244
NM_032944 STK31 2365 2383 aGAUGAUCCUGAUGgCUCu68 3 13 c false   <90%   3616
NM_172112 EYA2 50 68 GGgUGAUCCUGAUGACagu49 4 13 c false   <90%   2458
NM_014079 KLF15 575 593 GGgUGAUCCUGAUGACguc49 4 13 c false   <90%   2543
XM_029101 KIAA0947 4239 4257 aGAUGcUCCUGAUGACUCA34 2 13 bc false   <90%   8577
XM_940469 KIAA0947 4548 4566 aGAUGcUCCUGAUGACUCA34 2 13 bc false   <90%   8886
NM_002661 PLCG2 3322 3340 GGAaGAUCCUGAUGACgCu34 3 12 c false   <90%   4263
XR_018374 LOC441818 357 375 aGAUGAUuCUGAUGACUCu30 3 10 bc false   <90%   1424
XR_017309 LOC441818 357 375 aGAUGAUuCUGAUGACUCu30 3 10 bc false   <90%   1424
NM_016312 WBP11 1235 1253 aGAUGAUuCUGAUGACUCu30 3 10 bc false   <90%   2690
NM_173087 CAPN3 1566 1584 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3040
NM_212465 CAPN3 1635 1653 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3223
NM_024344 CAPN3 1710 1728 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3298
NM_000070 CAPN3 1710 1728 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3316
NM_212467 CAPN3 1913 1931 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3501
NM_212464 CAPN3 1635 1653 cGAUGAcCCUGAUGACUCg26 3 11 bc false   <90%   3881
NM_018557 LRP1B 11010 11028 uGAUGAaCCUGAUGACUgu24 4 10 c false   <90%   16557
NM_021129 PPA1 590 608 GGAUGAUCCUGAUGcagCc20 4 14 c false   <90%   1316
NM_000031 ALAD 268 286 GGAUGuUCCUGAUGACauA10 3 10 c false   <90%   3151
NM_001003945 ALAD 434 452 GGAUGuUCCUGAUGACauA10 3 10 c false   <90%   3317
XM_930002 LOC647016 72 90 uGAUGAUCCaGAUGACUug7 4 8 c false   <90%   195
XM_941572 LOC652199 72 90 uGAUGAUCCaGAUGACUug7 4 8 c false   <90%   195
NM_006210 PEG3 3661 3679 GGAUGAcCCUGAUGACaaA7 3 9 c false   <90%   6371
NM_005927 MFAP3 1259 1277 GGAUGAcCCUGAUGACcug2 4 9 c false   <90%   2914
NM_015349 KIAA0240 166 184 GGAUGAUgaUGAUGACUCg-27 3 9 bc false   <90%   6520


Hits to Sense strand














AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_014341 MTCH1 1088 1106 gGuGUCAUCAGGAUCAUgC75 3 14 c false   <90%   1890
NM_181042 PBRM1 2371 2389 UGAGUCAUCAGGAUgAUga67 3 14 c false   <90%   7448
NM_018165 PBRM1 2275 2293 UGAGUCAUCAGGAUgAUga67 3 14 c false   <90%   7508
NM_018313 PBRM1 2468 2486 UGAGUCAUCAGGAUgAUga67 3 14 c false   <90%   7545
NM_015226 KIAA0350 1757 1775 aGAcUCAUCAGGAUCAUga53 4 13 c false   <90%   6786
NM_138967 SCAMP5 512 530 UugGUCAUCAGcAUCAUCC35 3 8   false   <90%   3408
XR_019076 LOC390933 1320 1338 gcAGUCAUCAaGAUCAUCu20 4 8 c false   <90%   2416
NM_152716 FLJ36874 825 843 gcAGUCAUCAaGAUCAUCu20 4 8 c false   <90%   3636
NM_002095 GTF2E2 340 358 UGAGUCAUCAucAUCAUCg0 3 10   false   <90%   1560
NM_178468 FAM83C 3005 3023 UGAGUCAUCAucAUCAUCa0 3 10   false   <90%   3188
NM_014633 CTR9 1827 1845 aGAuUaAUCAGGAUCAUCC-2 3 13 bc false   <90%   4324
NM_001057 TACR2 161 179 aucGUCAUCuGGAUCAUCC-15 4 9 bc false   <90%   1197
NM_001059 TACR3 460 478 aucGUCAUCuGGAUCAUCC-15 4 9 bc false   <90%   1755


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1499
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_006212PFKFB24
XM_001132813LOC7287414
XM_001132780LOC7287344
NM_016217HECA3
NM_001039618CREBZF3
NM_001008493ENAH2
NM_018212ENAH2
NM_015035ZHX32
NM_001005609EDA2
NM_001399EDA2
NM_022473ZFP1062
NM_013989DIO22
NM_001007023DIO22
NM_000793DIO22
NM_001001557GDF62
NM_007354C3orf272
NM_053056CCND12
NM_080669SLC46A12
NM_0121942
NM_002508NID12
NM_007203PALM2-AKAP22
NM_147150PALM2-AKAP22
NM_001004065AKAP22
NM_006933SLC5A32
NM_005935AFF12
NM_012231PRDM22
NM_018662DISC12
NM_001012957DISC12
NM_005513GTF2E12
NM_024577SH3TC22
NM_001429EP3002
NM_001002258ATP5G32
NM_001689ATP5G32
NM_001079846CREBBP2
NM_004380CREBBP2
NM_139048HLTF2
NM_003071HLTF2
NM_000457HNF4A2
NM_178849HNF4A2
NM_057176BSND2
NM_006577B3GNT22
NM_172128CAMK2D2
NM_172127CAMK2D2
NM_003566EEA12
NM_005044PRKX2
NM_005814GPA332
NM_024721ZFHX42
NM_015053PPFIA42
XM_379228LOC4010932
XM_944985LOC4010932
NM_002996CX3CL12
NM_001077484SLC38A12
NM_030674SLC38A12
NM_017563IL17RD2
NM_001080973IL17RD2
NM_018362LIN7C2
NM_033631LUZP12
NM_001034841LOC1620732
NM_175921LOC2856362
NM_175066DDX512
NM_014873LPGAT12
NM_005121THRAP12
NM_002834PTPN112
NM_024873TNIP32
XM_925864LOC6423252
XM_001129399LOC6423462
XM_928707LOC6423462
XM_925879LOC6423462
XM_001130526LOC7286362
XM_001130555LOC7286362
XM_001130543LOC7286362
XM_001130536LOC7286362
NM_0209112
NM_014286FREQ2
NM_024620ZNF3292
NM_003887DDEF22
NM_014347ZNF3242
NM_014820TOMM70A2
NM_000838GRM12
NM_022097LOC639282
NM_014783ARHGAP11A2
NM_018440PAG12
NM_006456ST6GALNAC22
NM_015042ZNF6092
NM_0010996662
NM_153045C9orf912
NM_019116UBFD12
NM_0207252
NM_018119POLR3E1
NM_018149C17orf711
NM_152866MS4A11
NM_021950MS4A11
NM_006568CGRRF11
NM_181359IL6R1
NM_000565IL6R1
NM_139008HFE1
NM_139003HFE1
NM_139010HFE1
NM_139011HFE1
NM_139009HFE1
NM_000410HFE1
NM_139004HFE1
NM_139007HFE1
NM_139006HFE1
NM_207506SAMD121
NM_001040445ASB11
NM_002158FOXN21
NM_053282SH2D1B1
NM_173552C3orf581
NM_018492PBK1
NM_001012727AGPAT21
NM_006412AGPAT21
NM_001010932HGF1
NM_000601HGF1
NM_018110DOK41
NM_004728DDX211
NM_006753SURF61
NM_0155661
NM_145341PDCD41
NM_014456PDCD41
NM_152261C12orf231
NM_006486FBLN11
NM_138419FAM54A1
NM_0010992861
NM_004796NRXN31
NM_0011052501
NM_138970NRXN31
NM_152577ZNF6451
NM_015065EXPH51
NM_032117MND11
NM_002265KPNB11
NM_024997ATF7IP21
NM_001039380C10orf251
XM_942784LOC6422151
XM_931798LOC6437831
NM_022766CERK1
NM_019607C8orf441
NM_002636PHF11
NM_024165PHF11
NM_0208231
XM_001130009LOC7315451
XM_001129842LOC7292851
NM_005843STAM21
NM_001007098SCP21
NM_130463ATP6V1G21
NM_138282ATP6V1G21
NM_021626SCPEP11
NM_001035RYR21
NM_004114FGF131
NM_033642FGF131
NM_052832SLC26A71
NM_014982PCNX1
NM_001009554MFAP3L1
NM_021647MFAP3L1
NM_017658KLHL281
NM_198529EFCAB51
NM_153371LNX21
NM_015570AUTS21
NM_030755TXNDC11
NM_002706PPM1B1
NM_177969PPM1B1
NM_001033557PPM1B1
NM_025015HSPA12A1
NM_017734PALMD1
NM_002182IL1RAP1
NM_153256C10orf471
NM_001039960SLC4A81
NM_020917ZFP141
NM_004720EDG41
NM_0010129671
NM_003810TNFSF101
NM_000303PMM21
NM_022842CDCP11
NM_001040455SIDT21
NM_014761KIAA01741
NM_001018053PFKFB21
NM_0010976361
NM_0010976341
NM_0010976351
NM_001490GCNT11
NM_0010976331
NM_178126LOC1624271
NM_004177STX31
NM_001012965KLK61
NM_002774KLK61
NM_001012964KLK61
NM_002126HLF1
NM_014363SACS1
NM_001025603RFX51
NM_000449RFX51
NM_016125LOC511361
NM_030899ZNF3231
NM_145909ZNF3231
NM_173676PNPLA11
NM_016144COMMD101
NM_004398DDX101
NM_016118NUB11
NM_001809CENPA1
NM_001042426CENPA1
NM_001722POLR3D1
NM_144625WDR641
NM_080473GATA51
NM_001987ETV61
NM_002128HMGB11
NM_007358MTF21
NM_001001664LOC3397451
NM_005366MAGEA111
NM_001011544MAGEA111
NM_016298FBXO401
NM_001002814RAB11FIP11
NM_001002233RAB11FIP11
NM_025151RAB11FIP11
NM_020699GATAD2B1
NM_173084TRIM591
NM_014021SSX2IP1
XM_496597FLJ304281
NM_017694FLJ201601
NM_198460GBP61
NM_006814PSMF11
NM_178578PSMF11
XM_001129292MBOAT21
NM_138799MBOAT21
NM_017614BHMT21
NM_024884L2HGDH1
NM_001018058TFEC1
NM_012252TFEC1
NM_001039211ATAD3C1
NM_014877HELZ1
NM_198904GABRG21
NM_032314COQ51
NM_004797ADIPOQ1
NM_138479C1orf2131
NM_025083EDC31
NM_005822DSCR1L11
NM_002842PTPRH1
NM_025214CCDC681
NM_000134FABP21
NM_001659ARF31
NM_018569C4orf161
NM_020337ANKRD501
NM_173536GABRG11
NM_198274SMYD11
NM_014009FOXP31
NM_020718USP311
NM_015084MRPS271
NM_014747RIMS31
NM_001563IMPG11
NM_019046ANKRD161
NM_015020PHLPPL1
NM_213598ZNF5431
NM_018293ZNF6541
XM_001126706ZNF6541
NM_006536CLCA21
NM_002577PAK21
NM_001759CCND21
NM_0010996781
XM_941810LOC2840231
XM_929835LOC2840231
NM_016356DCDC21
NM_001032282KLF101
NM_005655KLF101
NM_012137DDAH11
NM_001010888ZC3H12B1
NM_016200LSM81
NM_006300ZNF2301
NM_019618IL1F91
NM_020205OTUD7B1
NM_003972BTAF11
NM_014320HEBP21
NM_015104KIAA04041
NM_003026SH3GL21
NM_206996SPAG171
NM_020768KCTD161
NM_015154MESDC21
NM_015288PHF151
XM_001131234LOC7303381
XM_001126530LOC7305481
NM_212557AMTN1
NM_005406ROCK11
NM_133458ZFP901
NM_152835PDIK1L1
NM_007157ZXDB1
NM_014141CNTNAP21
XM_943391LOC3399701
XM_291095LOC3399701
NM_001018090Gcom11
NM_001018102GRINL1A1
NM_015532GRINL1A1
NM_001018091Gcom11
NM_004157PRKAR2A1
NM_032689ZNF6071
NM_001037293PALM21
NM_053016PALM21
NM_178157FUT81
NM_178156FUT81
NM_178155FUT81
NM_004480FUT81
NM_178154FUT81
NM_015577RAI141
NM_080671KCNE41
NM_032165LRRIQ11
XM_001129158LIMS11
NM_005095ZMYM41
NM_0153251
NM_016599MYOZ21
NM_152688KHDRBS21
NM_001042508LOC6534831
NM_016072GOLT1B1
NM_198889ANKRD171
NM_032217ANKRD171
NM_004090DUSP31
NM_134265WSB11
NM_015626WSB11
NM_0010992781
NM_006828ASCC31
NM_001002295GATA31
NM_002051GATA31
NM_002595PCTK21
NM_005105RBM8A1
NM_002721PPP6C1
NM_0011127411
NM_001338CXADR1
NM_018120ARMC11
NM_182724CREM1
NM_182772CREM1
NM_181571CREM1
NM_182853CREM1
NM_182718CREM1
NM_182771CREM1
NM_182722CREM1
NM_183060CREM1
NM_182717CREM1
NM_182770CREM1
NM_182721CREM1
NM_183012CREM1
NM_182719CREM1
NM_182725CREM1
NM_183011CREM1
NM_182850CREM1
NM_182723CREM1
NM_182720CREM1
NM_182769CREM1
NM_183013CREM1
NM_007115TNFAIP61
NM_032606CAPS21
NM_000633BCL21
NM_020813ZNF4711
NM_012074DPF31
NM_153347TMEM86A1
NM_005962MXI11
NM_001008541MXI11
NM_130439MXI11
NM_014743KIAA02321
NM_0011005901
NM_015387PREI31
NM_199482PREI31
NM_0011008191
NM_144639UROC11
NM_002847PTPRN21
NM_130843PTPRN21
NM_130842PTPRN21
NM_004737LARGE1
NM_133642LARGE1
NM_052931SLAMF61
NM_001638APOF1
NM_000439PCSK11
NM_0010087811
XM_936538FAT31
XM_926199FAT31
NM_015394ZNF101
NM_005434MALL1
NM_001008738FNIP11
NM_133372FNIP11
NM_017676ZH2C21
NM_138804LOC1309511
NM_145321OSBPL31
NM_145320OSBPL31
NM_145322OSBPL31
NM_015550OSBPL31
NM_001037171ACOT91
NM_001033583ACOT91
NM_032718MFSD91
NM_001079673FNDC3A1
NM_014923FNDC3A1
NM_002309LIF1
NM_006587CORIN1
NM_005486TOM1L11
NM_194318B3GALTL1
NM_024009GJB31
NM_001005752GJB31
NM_033160ZNF6581
NM_001032297ZNF658B1
NM_020353PLSCR41
NM_017719SNRK1
NM_0011005941
NM_001033602KIAA07741
NM_015233KIAA07741
NM_207429FLJ458031
NM_001007097NTRK21
NM_031208FAHD11
NM_004052BNIP31
NM_014666CLINT11
NM_053277CLIC61
NM_0010853821
NM_017703FBXL121
NM_001748CAPN21
NM_032683FKSG241
XM_001134215PDPR1
NM_145756ZNF3961
NM_001012393OPCML1
NM_002545OPCML1
NM_145895KLK121
NM_207335KLHDC61
NM_020393PGLYRP41
NM_005160ADRBK21
NM_030929KAZALD11
NM_005232EPHA11
NM_152354ZNF285A1
NM_012141INTS61
NM_001039937INTS61
NM_024012HTR5A1
NM_145063C6orf1301
NM_018982YIPF11
NM_0010976381
NM_000511FUT21
NM_031442TMEM471
NM_022786ARV11
NM_014423AFF41
NM_003441ZNF1411
NM_007039PTPN211
NM_022451NOC3L1
NM_022818MAP1LC3B1
NM_020715PLEKHH11
NM_006815TMED21
NM_000342SLC4A11
NM_018425PI4KII1
NM_001009909LUZP21
NM_000529MC2R1
NM_025136OPA31
NM_052918SORCS11
NM_001013031SORCS11
NM_007059KPTN1
NM_001923DDB11
NM_018153ANTXR11
NM_030581WDR591
NM_138693KLF141
NM_015052HECW11
NM_001037954DIXDC11
NM_033425DIXDC11
NM_021615CHST61
NM_018988GFOD11
NM_001042705IQCJ1
NM_005683GPR551
XM_940966LOC6472191
NM_001037317PAP2D1
NM_001010861PAP2D1
NM_005500SAE11
NM_007181MAP4K11
NM_002390ADAM111
NM_018390PLCXD11
NM_015635GAPVD11
NM_152716FLJ368741
NM_006253PRKAB11
NM_014655SLC25A441
NM_000560CD531
NM_001040033CD531
NM_213606SLC16A121
NM_171825CAMK2A1
NM_015981CAMK2A1
NM_001039844ACBD71
NM_015847MBD11
NM_015845MBD11
NM_015844MBD11
NM_002384MBD11
NM_015846MBD11
NM_052831C6orf1921
NM_005819STX61
NM_014035SNX241
NM_000092COL4A41
NM_018207TRIM621
NM_006282STK41
NM_002378MATK1
NM_139354MATK1
NM_139355MATK1
NM_173808NEGR11
NM_181336LEMD21
NM_052926PNMA51
NM_0011031511
NM_0011031501
NM_001781CD691
NM_017924C14orf1191
NM_015568PPP1R16B1
NM_001039656MTL51
NM_018018SLC38A41
NM_005118TNFSF151
NM_002208ITGAE1
NM_007033RER11
NM_021095SLC5A61
NM_018247TMEM30A1
XM_001133585LOC7293171
XM_941786LOC6471531
NM_003375VDAC21
NM_0011055731
NM_001804CDX11
NM_020041SLC2A91
NM_001001290SLC2A91
NM_145861EDARADD1
NM_080738EDARADD1
NM_001035534FAM129B1
NM_022833FAM129B1
NM_017723C9orf1671
NM_022978SERF1B1
NM_021967SERF1A1
XM_001130863LOC7284921
NM_032977CASP101
NM_001230CASP101
NM_016946F11R1
NM_145207SPATA51
NM_033303ADRA1A1
NM_001296CCBP21
NM_018154ASF1B1
NM_007055POLR3A1
NM_198389PDPN1
NM_006474PDPN1
NM_001006624PDPN1
NM_001006625PDPN1
NM_152850PIGO1
NM_032634PIGO1
NM_133459CCBE11
NM_014765TOMM201
NM_0010985091
NM_014853RUTBC11
NM_020702KIAA11611
NM_015070ZC3H131
NM_206925CA121
NM_001218CA121
XM_001127362KIAA05741
NM_002501NFIX1
NM_080625C20orf1601
NM_001039905FLJ385961
NM_022826MARCH71
NM_002666PLIN1
NM_004655AXIN21
NM_032015RNF261
NM_018373SYNJ2BP1
NM_017847C1orf271
NM_005841SPRY11
NM_199327SPRY11
NM_018706DHTKD11
NM_002272KRT41
NM_014056HIGD1A1
NM_0010996681
NM_0010996691
NM_198484ZNF6211
NM_0010984141
NM_001015882bA16L21.2.11
NM_0010122411
NM_020748INTS21
NM_183061SLC9A101
NM_013252CLEC5A1
NM_030627CPEB41
NM_001031684SFRS71
NM_022075LASS21
NM_181746LASS21
NM_020133AGPAT41
NM_080752ZSWIM31
NM_198381ELF51
NM_001422ELF51
NM_001029996MGC336571
NM_001412EIF1AX1
NM_006676USP201
NM_0011103031
NM_001008563USP201
NM_031471URP21
NM_178443URP21
NM_130440PTPRF1
NM_002840PTPRF1
NM_000242MBL21
NM_017523XAF11
NM_199139XAF11
NM_002581PAPPA1
NM_005759ABI21
XM_001126750ABI21
NM_017431PRKAG31
XM_001132080LOC7310071
XM_928632LOC6456191
XM_001132419SLC35F31
NM_173508SLC35F31
NM_020552TCL61
NM_020553TCL61
NM_024733ZNF6651
NM_032147USP441
NM_001042403USP441
NM_182484BAGE51
NM_182482BAGE21
NM_181704BAGE41
NM_182481BAGE31
XM_001133142LOC7314501
NM_144636CHCHD41
NM_0010985021
NM_006767LZTR11
NM_000843GRM61
NM_020375C12orf51
NM_022336EDAR1
NM_018073TRIM681
NM_014786ARHGEF171
NM_145259ACVR1C1
NM_0011110311
NM_0011110331
NM_0011110321
NM_006731FCMD1
NM_001079802FCMD1
XM_940587LOC6543501
XM_946378LOC6543501
NM_017813IMPAD11
NM_153610CMYA51
NM_001039709CBFA2T21
NM_001032999CBFA2T21
NM_005093CBFA2T21
XM_001129796LOC6455131
NM_004491GRLF11
NM_014016SACM1L1
NM_032305POLR3GL1
NM_183230IKZF31
NM_183229IKZF31
NM_183231IKZF31
NM_183228IKZF31
NM_183232IKZF31
NM_012481IKZF31
NM_001030060SAMD51
NM_001035513SDHC1
NM_001035512SDHC1
NM_003001SDHC1
NM_001035511SDHC1
NM_018225SMU11
NM_004571PKNOX11
NM_003201TFAM1
NM_182704SELV1
NM_023075MPPE11
NM_000926PGR1
NM_0011112851
NM_020536CSRP2BP1
NM_177926CSRP2BP1
NM_001031617COX191
NM_021218C9orf801
NM_014953DIS31
NM_001077706LFDH1
XM_001130495LOC7284291
NM_024871MAP6D11
NM_145115ZNF4981
NM_152253CHKB1
NM_014411NAG81
NM_004285H6PD1
NM_001018111PODXL1
NM_005397PODXL1
NM_017736THUMPD11
NM_019098CNGB31
NM_001003828PARVB1
NM_013327PARVB1
NM_172367TUSC51
NM_014720SLK1
NM_147180PPP3R21
NM_001004053ACTBL11
XM_930650LOC6530891
NM_001005356ACTBL11
XM_001132281LOC7287161
NM_016484PDZD111
NM_014685HERPUD11
NM_001010990HERPUD11
NM_001010989HERPUD11
NM_022918TMEM1351
NM_002210ITGAV1
NM_003032ST6GAL11
NM_173217ST6GAL11
NM_173216ST6GAL11
NM_020776KIAA13281
NM_020448NPAL31
NM_019083CCDC761
NM_144984C10orf721
XM_939663KIAA15531
NM_001080450KIAA15531
NM_006578GNB51
NM_016194GNB51
NM_006899IDH3B1
NM_174856IDH3B1
NM_004486GOLGA21
NM_015848KRT761
NM_018281ECHDC21
NM_153211C18orf171
XM_001127274SMYD21
NM_033437PDE5A1
NM_001083PDE5A1
NM_033430PDE5A1
XM_929030LOC1615271
XM_933066LOC6436961
NM_178011LRRTM31
NM_018364RSBN11
NM_153027FLJ316591
NM_003390WEE11
NM_002843PTPRJ1
NM_020704FAM40B1
NM_032656DHX371
NM_015275KIAA10331
NM_013244MGAT4C1
NM_017644KLHL241
NM_002416CXCL91
NM_021705NFYA1
NM_002505NFYA1
NM_173519MGC346461
NM_0529271
NM_001083603PTCH11
NM_001083607PTCH11
NM_001083602PTCH11
NM_001083605PTCH11
NM_001083606PTCH11
NM_001083604PTCH11
NM_000264PTCH11
NM_030806C1orf211
NM_001077693ECSM21
NM_015345DAAM21
NM_021079NMT11
NM_006614CHL11
NM_139057ADAMTS171
XM_938097DKFZP686C22811
XM_927469DKFZP686C22811
NM_130830LRRC151
NM_0177821
NM_001619ADRBK11
NM_005927MFAP31
NM_013337TIMM221
NM_005479FRAT11
NM_020730DLG31
NM_021120DLG31
NM_001001389CD441
NM_001001390CD441
NM_001001391CD441
NM_001001392CD441
NM_000610CD441
NM_006631ZNF2661
NM_198058ZNF2661
NM_020836KIAA14461
NM_001040431CCDC561
NM_013435RAX1
NM_017415KLHL31
XM_376305DUB31
NM_175077SLA21
NM_003828MTMR11
NM_022719DGCR141
NM_139246C9orf971
NM_005149TBX191
NM_020485RHCE1
NM_138616RHCE1
NM_138618RHCE1
NM_138617RHCE1
NM_015039NMNAT21
NM_170706NMNAT21
NM_024554PGBD51
NM_172337OTX21
NM_021728OTX21
NM_080874ASB51
NM_130476MADD1
NM_130472MADD1
NM_130470MADD1
NM_130474MADD1
NM_130471MADD1
NM_003682MADD1
NM_130475MADD1
NM_130473MADD1
NM_014940MON1B1
NM_003948CDKL21
NM_004346CASP31
NM_032991CASP31
NM_018413CHST111
NM_017798YTHDF11
NM_148170CTSC1
NM_017661SUHW41
NM_001002843SUHW41
NM_002483CEACAM61
XM_001131395LOC7298101
XM_001126629LOC7306341
NM_005590MRE11A1
NM_005591MRE11A1
NM_152330FRMD61
NM_001042481FRMD61
NM_021252RAB181
NM_182757IBRDC21
NM_0247761
NM_001007563IGFBPL11
NM_024596MCPH11
NM_025209EPC11
NM_032357CCDC1151
NM_012098ANGPTL21
NM_002776KLK101
NM_001077500KLK101
NM_145888KLK101
NM_003985TNK11
NM_207428C11orf551
NM_015313ARHGEF121
NM_145912NFAM11
NM_005788PRMT31
NM_172164NASP1
NM_002482NASP1
NM_152298NASP1
NM_000346SOX91
NM_017877C2orf181
NM_022787NMNAT11
NM_021195CLDN61
NM_152624DCP21
NM_173079RUNDC11
NM_019008SMCR7L1
NM_014759PHYHIP1
NM_0010993351
NM_001417EIF4B1
NM_172208TAPBP1
NM_006106YAP11
NM_005858AKAP81
NM_015111N4BP31
NM_018017C10orf1181
NM_005573LMNB11
NM_0207221
NM_016453NCKIPSD1
NM_184231NCKIPSD1
NM_203343EPB411
NM_203342EPB411
NM_004437EPB411
NM_015567SLITRK51
NM_000952PTAFR1
XM_001133085LOC7287901
XM_001128749LOC7280541
XM_373814LOC3885721
XM_001132421LOC3883121
XM_001125791LOC6427881
XM_001127886LOC7281001
NM_130391PTPRD1
NM_130393PTPRD1
NM_130392PTPRD1
NM_002839PTPRD1
NM_001040712PTPRD1
NM_000719CACNA1C1
NM_033100PCDH211
NM_152903KBTBD61
NM_005503APBA21
XM_944443LOC6461791
XM_933456LOC6461791
NM_006454MXD41
NM_018999KIAA11281
XM_937523KIAA16791
NM_001080427THSD7B1
NM_033505SELI1
NM_0334031
NM_012239SIRT31
NM_001017524SIRT31
NM_173476CCDC781
NM_006763BTG21
NM_001013399CCNC1
NM_005190CCNC1
NM_152406AFAP1L11
NM_001646APOC41
NM_207395ZNF324B1
NM_024636STEAP41
NM_020947KIAA16091
NM_001002837PIB5PA1
NM_001001132ITSN11
NM_178191ATPIF11
XM_932802LOC6453071
XM_498647LOC4403861
NM_024607PPP1R3B1
NM_014586HUNK1
NM_001623AIF11
NM_032955AIF11
NM_014390SND11
XM_939725LOC6541271
NM_144997FLCN1
NM_001001709FLJ455371
NM_018243SEPT111
NM_005650TCF201
NM_181492TCF201
NM_004408DNM11
NM_001005336DNM11
NM_021116ADCY11
NM_017958PLEKHB21
NM_0011006231
NM_006777ZBTB331
NM_173564FLJ375381
NM_138357CCDC109A1
NM_001044370MPPED11
NM_014344FJX11
NM_030783PTDSS21
NM_017530LOC555651
NM_014228SLC6A71
NM_144973MGC240391
NM_003861WDR221
NM_001001716NFKBIB1
NM_020794LRRC71
NM_002664PLEK1
NM_015685SDCBP21
NM_080489SDCBP21
NM_003137SRPK11
NM_206595ESRRG1
NM_001438ESRRG1
NM_206594ESRRG1
NM_176815DHFRL11
NM_018224C7orf441
NM_025104DBF4B1
NM_001039887C19orf551
NM_005797EVA11
NM_178314FLJ393781
NM_0010987251
NM_021966TCL1A1
NM_006068TLR61
NM_178457C20orf1741
NM_181605KRTAP6-31
NM_014023WDR371
NM_018363C10orf591
NM_173487C4orf331
NM_0010997831
NM_001018075NR3C11
NM_001018077NR3C11
NM_001018076NR3C11
NM_001018074NR3C11
NM_001024094NR3C11
NM_000176NR3C11
NM_000791DHFR1
NM_134445CD99L21
NM_134446CD99L21
NM_031462CD99L21
NM_022576PDC1
NM_002597PDC1
NM_005828WDR681
NM_003463PTP4A11
NM_134425SLC26A11
NM_031412GABARAPL11
NM_001080121PRNP1
NM_001080122PRNP1
NM_000311PRNP1
NM_001080123PRNP1
NM_183079PRNP1
NM_000994RPL321
NM_001007074RPL321
NM_001007073RPL321
NM_015458MTMR91
NM_152654DAND51
NM_016083CNR11
NM_033181CNR11
NM_000348SRD5A21
NM_030621DICER11
NM_177438DICER11
NM_001806CEBPG1
NM_017945SLC35A51
NM_130809PRRC11
NM_014903NAV31
XM_942958LOC6422361
XM_943005LOC6422361
XM_001126144LOC7305101
NM_0146431
NM_006290TNFAIP31
NM_002356MARCKS1
NM_003262TLOC11
NM_144571CNOT6L1
NM_033626CCDC1201
NM_182579C1orf1571
NM_153266TMEM1511
XM_001133285TMEM1511
NM_031453FAM107B1
NM_021943ZFAND31
NM_020157OTOR1
NM_000262NAGA1
NM_006713SUB11
NM_005094SLC27A41
NM_016265ZNF121
NM_006956ZNF121
NM_002427MMP131
NM_002346LY6E1
NM_145055C18orf251
NM_001008239C18orf251
NM_178509STXBP41
XM_938127ZNF6291
NM_001080417ZNF6291
NM_000857GUCY1B31
NM_030918SNX271
NM_032664FUT101
NM_001040441ZBTB81
XM_001124597LOC7304111
NM_001040439MAPK8IP31
NM_015133MAPK8IP31
NM_175609ARFGAP11
NM_018209ARFGAP11
NM_175852TXLNA1
XM_001132667LOC3387391
XM_001130961LOC3387391
NM_020909EPB41L51
NM_000191HMGCL1
NM_024850BTNL81
XM_931674LOC6531171
NM_001017361ECAT11
NM_017668NDE11
NM_004319ASTN11
NM_194317LYPD61
NM_025112ZXDC1
NM_003909CPNE31
NM_005207CRKL1
NM_152622MIER31
NM_020526EPHA81
NM_015627LDLRAP11
NM_003947KALRN1
NM_015470RAB11FIP51
NM_024345WDR321
NM_020782KLHDC51
NM_001008784CD200R21
NM_004098EMX21
NM_000668ADH1B1
NM_006565CTCF1
NM_198571FLJ392371
NM_214711LOC4011371
NM_022171TCTA1
NM_002264KPNA11
NM_016038SBDS1
NM_004277SLC25A271
NM_001008390CGGBP11
NM_003663CGGBP11
XM_931901LOC6436801
XM_943356LOC6436801
NM_005670EPM2A1
NM_153619SEMA6D1
NM_153618SEMA6D1
NM_153616SEMA6D1
NM_153617SEMA6D1
NM_020858SEMA6D1
NM_012465TLL21
NM_024940DOCK51
NM_002414CD991
NM_001033047NPNT1
NM_007315STAT11
NM_032900ARHGAP191
NM_079423MYL61
NM_021019MYL61
NM_020956PRX1
NM_0245241
XM_001125986LOC2838241
NM_022166XYLT11
NM_173812DPY19L21
NM_001007156NTRK31
NM_003012SFRP11
NM_018238AGK1
NM_024874KIAA0319L1
NM_001498GCLC1
NM_080685PTPN131
NM_080683PTPN131
NM_006264PTPN131
NM_080684PTPN131
NM_004694SLC16A61
NM_001013620ALG10B1
NM_024548LRRIQ21
NM_001079906ZNF3311
NM_018555ZNF3311
NM_001079907ZNF3311
NM_003241TGM41
NM_001010935RAP1A1
NM_002884RAP1A1
NM_014550CARD101
NM_138270ATRX1
NM_000489ATRX1
XM_001128623LOC7288491
NM_001167BIRC41
NM_145010C10orf631
NM_0155621
NM_001001701LOC4011521
NM_032119GPR981
NM_001259CDK61
NM_016040TMED51
XM_941162LOC4009501
XM_376049LOC4009501
NM_021021SNTB11
XM_376444LOC1334911
XM_941190LOC1334911
NM_201266NRP21
NM_003872NRP21
NM_201279NRP21
NM_001003702FLJ436921
NM_001009899KIAA20181
NM_024037C1orf1351
NM_018192LEPREL11
NM_012124CHORDC11
NM_004784NDST31
NM_138773SLC25A461
NM_021255PELI21
NM_152527SLC16A141
XM_001128243LOC7287051
NM_182536GKN21
NM_032291SGIP11
NM_018036C14orf1031
NM_013277RACGAP11
NM_019064SDK21
NM_001017980LOC2035471
NM_001001420SMAD51
NM_001001419SMAD51
NM_005903SMAD51
NM_017990PDPR1
NM_001046SLC12A21
NM_017650PPP1R9A1
NM_004154P2RY61
NM_000997RPL371
NM_017704ANKRD491
NM_182729TXNRD11
NM_0010937711
NM_182742TXNRD11
NM_003330TXNRD11
NM_182743TXNRD11
NM_007249KLF121
NM_005865PRSS161
NM_001037533GON4L1
NM_006444SMC21
NM_001042550SMC21
NM_001042551SMC21
NM_001099ACPP1
NM_014000VCL1
NM_003373VCL1
NM_000698ALOX51
XM_001127464ALOX51
NM_003204NFE2L11
NM_000827GRIA11
XM_001133837LOC7320991
XM_001133987LOC7296811
NM_002298LCP11
NM_0011113191
NM_0011013961
NM_004748CCPG11
NM_020739CCPG11
NM_001004304ZNF7401
NM_020770CGN1
NM_152734C6orf891
NM_003994KITLG1
NM_000899KITLG1
NM_020933ZNF3171
NM_014285EXOSC21
NM_006025P111
NM_015411SUMF21
NM_001042470SUMF21
NM_001042468SUMF21
NM_001042469SUMF21
NM_005270GLI21
NM_001080421UNC13A1
NM_000912OPRK11
NM_019592RNF201
NM_153645NUP501
NM_007172NUP501
NM_173562KCTD201
NM_025059C6orf971
NM_002677PMP21
NM_004308ARHGAP11
XM_939296MGA1
NM_001080541MGA1
XM_932727MGA1
XM_944092MGA1
NM_001009934DNASE1L11
NM_001009932DNASE1L11
NM_006730DNASE1L11
NM_001009933DNASE1L11
NM_017413APLN1
NM_015058KIAA05641
NM_001644APOBEC11
NM_207037TCF121
NM_003205TCF121
NM_207040TCF121
NM_207036TCF121
NM_207038TCF121
NM_080744SRCRB4D1
XM_942689LOC6427401
NM_003421ZNF37A1
NM_001007094ZNF37A1
NM_024885TAF7L1
NM_021117CRY21
NM_014571HEYL1
XM_940609FLJ250761
XM_059689FLJ250761
NM_153825SLA/LP1
NM_014374REPIN11
NM_0010996961
NM_013400REPIN11
NM_0010996951
NM_002025AFF21
NM_012175FBXO31
NM_003615SLC4A71
NM_001081461JMJD61
NM_022789IL251
NM_172314IL251
NM_020531C20orf31
NM_014827ZC3H11A1
XM_936434LOC4411551
XM_926112LOC4411551
XM_942821LOC4411551
XM_930997LOC4411551
XM_942819LOC4411551
XM_942815LOC4411551
XM_496814LOC4411551
XM_931006LOC4411551
NM_181527NAT51
NM_181528NAT51
NM_016100NAT51
NM_006154NEDD41
NM_198400NEDD41
NM_003326TNFSF41
NM_015200SCC-1121
NM_0011003991
XM_001131268LOC7310851
NM_001001875TPD52L31
NM_033516TPD52L31
NM_001017440CALN11
NM_031468CALN11
NM_001905CTPS1
NM_003059SLC22A41
NM_003143SSBP11
NM_000318PXMP31
NM_001079867PXMP31
NM_0011049251
NM_018257PCMTD21
NM_006180NTRK21
NM_001018064NTRK21
NM_020774MIB11
NM_194314ZBTB411
NM_020844KIAA14561
NM_0010996771
XM_934131LOC6446241
XM_943172LOC6475431
NM_019894TMPRSS41
NM_0010839471
NM_004085TIMM8A1
NM_015446AHCTF11
XM_001126456AHCTF11
NM_138444KCTD121
NM_007148ZNF1791
NM_000208INSR1
NM_001079817INSR1
NM_017768LRRC401
NM_004360CDH11
NM_030925CAB39L1
NM_001079670CAB39L1
NM_024692CLIP41
NM_024511C4orf151
NM_019069WDR5B1
NM_018835RC3H21
NM_004976KCNC11
NM_000254MTR1
NM_018518MCM101
NM_182751MCM101
NM_153712TTL1
NM_001039693FLJ379531
NM_022054KCNK131
NM_022574PERQ11
NM_032017STK401
NM_001042633SNX211
NM_033421SNX211
NM_001042632SNX211
NM_152897SNX211
NM_024771NAT111
NM_005338HIP11
NM_001858COL19A11
NM_058163TSR21
NM_001079877RASA41
NM_006989RASA41
NM_001752CAT1
NM_199040NUDT41
NM_019094NUDT41
NM_203382AMACR1
NM_003200TCF31
NM_177398LMX1A1
NM_001033507LMX1A1
NM_177399LMX1A1
NM_005730CTDSP21
NM_016331ZNF6391
NM_016551TM7SF31
NM_000484APP1
NM_201414APP1
NM_201413APP1
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_007350PHLDA11
NM_003118SPARC1
NM_001010853ACY1L21
NM_022730COPS7B1
NM_001039580MAP91
NM_133457EMID21
NM_207107UCHL5IP1
NM_017518UCHL5IP1
NM_033641COL4A61
NM_001847COL4A61
XM_376469FLJ231521
XM_939163FLJ231521
NM_001040424PRDM151
NM_003387WIPF11
NM_001077269WIPF11
NM_173214NFAT51
NM_006599NFAT51
NM_138714NFAT51
NM_0011131781
NM_138713NFAT51
NM_004012DMD1
NM_004016DMD1
NM_004009DMD1
NM_004017DMD1
NM_000109DMD1
NM_004011DMD1
NM_004015DMD1
NM_004023DMD1
NM_004022DMD1
NM_004020DMD1
NM_004021DMD1
NM_004007DMD1
NM_004006DMD1
NM_004013DMD1
NM_004014DMD1
NM_004018DMD1
NM_004010DMD1
NM_052966FAM129A1
NM_175862CD861
NM_006889CD861
NM_032560SMEK11
NM_130847AMOTL11
NM_198920C6orf1571
NM_014494TNRC6A1
NM_172241CTAGE11
NM_052907TMEM132B1
NM_000621HTR2A1
NM_014866KIAA03101
NM_000958PTGER41
NM_005584MAB21L11
NM_003287TPD52L11
NM_001003395TPD52L11
NM_001003396TPD52L11
NM_001003397TPD52L11
NM_052940LRRC421
NM_001694ATP6V0C1
XM_001130742ATP6V0C1
NM_024993LRRTM41
NM_024653PRKRIP11
NM_017791C14orf581
NM_003772JRKL1
NM_025000C2orf371
NM_016026RDH111
NM_001018000KIAA10261
NM_001017999KIAA10261
NM_001018001KIAA10261
NM_015209KIAA10261
NM_001649SHROOM21
NM_198992SYT101
NM_001024460VNN31
NM_078625VNN31
NM_018399VNN31
NM_006609MAP3K21
XM_001128799MAP3K21
NM_000800FGF11
NM_033137FGF11
NM_033136FGF11
NM_001077243GRIA41
NM_000829GRIA41
NM_006532ELL1
NM_020428SLC44A21
NM_153035C1orf831
NM_003239TGFB31
XM_001126431LOC1509351
XM_001133665LOC1509351
NM_144590ANKRD221
NM_003644GAS71
NM_201432GAS71
NM_201433GAS71
NM_024813C1orf821
NM_007146VEZF11
NM_002832PTPN71
NM_080588PTPN71
NM_025010KLHL181
NM_144579SFXN51
NM_000428LTBP21
NM_007137ZNF811
NM_001017921VMAC1
NM_000433NCF21
NM_020801ARRDC31
NM_032594INSM21
NM_152902TIPRL1
NM_078470COX151
NM_052882ZIM31
NM_005124NUP1531
NM_203395IYD1
NM_138555KIF231
NM_004856KIF231
NM_0011024021
NM_021213PCTP1
NM_001017928CCDC581
NM_031244SIRT51
NM_174916UBR11
NM_015077SARM11
NM_201563FCGR2C1
NM_001005411FCGR2C1
NM_001005410FCGR2C1
NM_016542MST41
NM_001042452MST41
NM_001042453MST41
NM_014809KIAA03191
NM_058166TRIM61
NM_001003818TRIM61
NM_004852ONECUT21
NM_0011024701
NM_006546IGF2BP11
NM_0071131
NM_001030055ARHGAP51
NM_001173ARHGAP51
XM_934514LOC6447141
XM_945782LOC6447141
NM_057178RFFL1
NM_001017368RFFL1
NM_000332ATXN11
NM_017824MARCH51
NM_006712FASTK1
NM_033015FASTK1
NM_014910ZNF5071
NM_130385MRVI11
NM_0011001631
NM_0010985791
NM_0011001671
NM_003131SRF1
NM_012256ZNF2121
NM_001286CLCN61
XM_001132292LOC7288611
XM_001131518LOC7311121
NM_1736011
NM_0010996501
NM_001039396MPEG11
XM_001128169LOC7286871
NM_021783EDA2R1
NM_020148SPIRE11
NM_001017523BTBD111
NM_001018072BTBD111
NM_017686GDAP21
NM_033267IRX21
NM_015097CLASP21
NM_007271STK381
NM_006873STON11
NM_000153GALC1
NM_024080TRPM81
NM_006380APPBP21
NM_004290RNF141
NM_183400RNF141
NM_183398RNF141
NM_183401RNF141
NM_183399RNF141
NM_001007538TMEM461
NM_016121KCTD31
XM_001125098LOC7304171
NM_016128COPG1
NM_000084CLCN51
NM_197949CLEC7A1
NM_197950CLEC7A1
NM_022570CLEC7A1
NM_197948CLEC7A1
NM_197947CLEC7A1
NM_021167GATAD11
NM_021912GABRB31
NM_000814GABRB31
NM_016357LIMA11
NM_002357MXD11
NM_147127EVC21
NM_018976SLC38A21
NM_017842FLJ204891
NM_015210KIAA08021
NM_207411XKR51
NM_022755IPPK1
NM_080392PTP4A21
NM_080391PTP4A21
XM_001132378PTP4A21
XM_001132367PTP4A21
XM_001132372PTP4A21
XM_001132369PTP4A21
XM_001132357PTP4A21
NM_003594TTF21
NM_001042601TTC141
NM_002444MSN1
NM_212558LOC4014981
NM_0010992201
NM_018235CNDP21
NM_144949SOCS51
NM_014011SOCS51
NM_000690ALDH21
NM_015130TBC1D91
NM_198066GNPNAT11
XM_944564MGC158851
XM_378517MGC158851
NM_012315KLK91
NM_024573C6orf2111
NM_030626LRRC271
NM_000369TSHR1
NM_001356DDX3X1
NM_004093EFNB21
NM_153713LIX1L1
NM_130438DYRK1A1
NM_101395DYRK1A1
NM_130436DYRK1A1
NM_001396DYRK1A1
NM_130437DYRK1A1
NM_006857RY11

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317