Predicted Off-targets for siRNA "cuaaaccccaaagaaaaacc" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

61 hits were found for UAAACCCCAAAGAAAAACC (35 guide strand hits and 26 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_015384 NIPBL 2476 2494 gAAACCCCAAAGcAAAAgg79 4 11   false   <90%   8648
NM_133433 NIPBL 2476 2494 gAAACCCCAAAGcAAAAgg79 4 11   false   <90%   9717
NM_033044 MACF1 2027 2045 aAAACCCCAAAGcAAAAag79 4 11   false   <90%   19271
NM_024867 FLJ23577 3968 3986 cAgACCCCAAAGAAAAAuC75 3 14 c false   <90%   5651
NM_016578 RSF1 3613 3631 aAgACCCCAAAGAAAAAau70 4 14 c false   <90%   5138
NM_001032395 GPR126 2591 2609 aggACCCCAAAGAAAAACu62 4 15 bc false   <90%   6818
NM_001032394 GPR126 2591 2609 aggACCCCAAAGAAAAACu62 4 15 bc false   <90%   6864
NM_198569 GPR126 2675 2693 aggACCCCAAAGAAAAACu62 4 15 bc false   <90%   6902
NM_020455 GPR126 2675 2693 aggACCCCAAAGAAAAACu62 4 15 bc false   <90%   6948
NM_053054 CATSPER1 2607 2625 UAAACCCCAAAaAAAAAaa58 3 11   false   <90%   2630
NM_004697 PRPF4 2593 2611 guuACCCCAAAGcAAAACC56 4 9   false   <90%   2756
NM_020927 KIAA1576 3761 3779 aAAACCCCAAAaAAAAAaa56 4 10   false   <90%   3784
NM_053056 CCND1 4281 4299 aAAACCCCAAAaAAAAAaa56 4 10   false   <90%   4304
NM_001115 ADCY8 5983 6001 aAAACCCCAAAaAAAAAaa56 4 10   false   <90%   6005
XM_930192 LOC647166 901 919 gcAACCCCAAAGAAAuACu55 4 13 c false   <90%   1461
XM_941669 LOC652259 1036 1054 gcAACCCCAAAGAAAuACu55 4 13 c false   <90%   1596
NM_152660 FAM76A 649 667 gAAAuCCCAAAGAAAAAgu38 4 12 c false   <90%   2161
XR_019020 LOC645621 68 86 gAAACCCCuAAGAAAAAgC35 3 8 c false   <90%   880
XR_015548 LOC729449 68 86 gAAACCCCuAAGAAAAAgC35 3 8 c false   <90%   934
NM_144664 FAM76B 952 970 gAAACuCCAAAGAAAAAgC32 3 11 c false   <90%   3958
XM_941347 LOC645790 710 728 gAAACaCCAAAGAAAAACa29 3 12 bc false   <90%   1658
XM_930464 LOC645790 710 728 gAAACaCCAAAGAAAAACa29 3 12 bc false   <90%   1658
NR_003255 TSIX 9610 9628 aAAACCCCAAuGAAAAAaa29 4 9 c false   <90%   36861
XM_001126246 LOC730469 541 559 gAAACCaCAAAGAAAAAaa24 4 10 c false   <90%   681
XM_001133483 LOC729451 541 559 gAAACCaCAAAGAAAAAaa24 4 10 c false   <90%   681
NM_002393 MDM4 1868 1886 UgAACCCaAAAGAAAAACu21 3 10 bc false   <90%   2554
NM_004538 NAP1L3 886 904 aAAACCCuAAAGAAAAcCC12 3 8 c false   <90%   2687
NM_006269 RP1 4182 4200 UAAACuCCAAAGAAAAcaC10 3 10 c false   <90%   7100
NM_003897 IER3 538 556 aAAACCaCAAAGAAAcACC5 3 8 c false   <90%   1254
NM_178858 SFXN2 2264 2282 UAAACaCCAAAGAAAgACu5 3 9 c false   <90%   2599
NM_213603 ZNF789 1052 1070 UucACaCCAAAGAAAAACC5 3 13 bc false   <90%   1654
NM_018557 LRP1B 7 25 agAACCCCAgAGAAAAACg-1 4 8 bc false   <90%   16557
NM_020317 C1orf63 956 974 gAAAuCCCAAuGAAAAACC-14 3 8 c false   <90%   1482
NM_080390 TCEAL2 627 645 gAAAgCCaAAAGAAAAACC-15 3 11 bc false   <90%   1123
NM_002084 GPX3 1270 1288 UAAACCCaAAgGAAAAACC-23 2 8 c false   <90%   1779


Hits to Sense strand



























AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_133642 LARGE 3392 3410 uGUUUUUCUUUGGGGgUUu66 3 14 c false   <90%   4131
NM_004737 LARGE 3455 3473 uGUUUUUCUUUGGGGgUUu66 3 14 c false   <90%   4194
NM_020884 MYH7B 6200 6218 uucUUUUCUUUGGGGUUcA64 4 14 c false   <90%   6289
NM_001004712 OR4K14 89 107 uaUUUUUCUUUGGGGUcUA63 3 14 ac false   <90%   933
NM_022756 C1orf149 1095 1113 uuaUUUUCUUUGGGGUUUu62 4 15 bc false   <90%   2166
NM_033542 SYS1 1646 1664 GaUUUUUCUUUGGGGUggA62 3 14 ac false   <90%   2823
NM_001042555 FRS2 2880 2898 uuUUUUUCUUUGGuGUUUg62 4 11 c false   <90%   6875
NM_006654 FRS2 2887 2905 uuUUUUUCUUUGGuGUUUg62 4 11 c false   <90%   6882
XM_941693 GPR178 1152 1170 GGUUUUUCUUUGuGGUgcu58 4 12   false   <90%   5586
XM_376550 GPR178 1152 1170 GGUUUUUCUUUGuGGUgcu58 4 12   false   <90%   5590
NM_004626 WNT11 1704 1722 GcUUUUUCUUUGGGGUggc57 4 14 ac false   <90%   1927
NM_024329 EFHD2 2223 2241 uuUUUUUCUUUGGGcUUUu56 4 12 c false   <90%   2387
NM_198847 FAM111A 1791 1809 aaUUUUUCUUUGGGGcUUc55 4 13 c false   <90%   3623
NM_022074 FAM111A 1830 1848 aaUUUUUCUUUGGGGcUUc55 4 13 c false   <90%   3662
NM_001008222 ZDHHC9 1572 1590 uGUUUUUCUUUGGucUUUA53 3 12 c false   <90%   2913
NM_016032 ZDHHC9 1608 1626 uGUUUUUCUUUGGucUUUA53 3 12 c false   <90%   2949
NM_000615 NCAM1 3877 3895 uGUgUUUCUUUGGGGgUUA35 3 11 c false   <90%   5951
NM_181351 NCAM1 3907 3925 uGUgUUUCUUUGGGGgUUA35 3 11 c false   <90%   5981
NM_014734 KIAA0247 3427 3445 acUUUUUgUUUGGGGUUUA24 3 11 bc false   <90%   5402
NM_018070 SSBP3 1721 1739 GuUUUUUgUUUGGGGUUUu21 3 10 bc false   <90%   2014
NM_145716 SSBP3 1781 1799 GuUUUUUgUUUGGGGUUUu21 3 10 bc false   <90%   2074
NM_001009955 SSBP3 1813 1831 GuUUUUUgUUUGGGGUUUu21 3 10 bc false   <90%   2106
NM_006767 LZTR1 494 512 uGUUUgUCUUUGGGGgUUA8 3 9 c false   <90%   4332
NM_003028 SHB 4849 4867 GGUUUUUgUUUuGGGUUUg0 3 7   false   <90%   6021
NM_014563 TRAPPC2 1799 1817 GGUUgaUCUUUGGGGUUUu-19 3 12 bc false   <90%   2691
NM_001011658 TRAPPC2 1941 1959 GGUUgaUCUUUGGGGUUUu-19 3 12 bc false   <90%   2833


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1408
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_002336LRP63
NM_033020TRIM333
NM_015906TRIM333
XM_938097DKFZP686C22813
XM_927469DKFZP686C22813
NM_203329CD593
NM_203331CD593
NM_203330CD593
NM_000611CD593
NM_020443NAV13
NM_001024843TNRC6B3
NM_015088TNRC6B3
NM_015264C22orf92
NM_001009880C22orf92
XM_927226LOC6429212
NM_001012755MCART62
NM_000332ATXN12
NM_015865SLC14A12
NM_003774GALNT42
NM_000599IGFBP52
NM_032325MGC111022
NM_152673MUC202
NM_0010985162
NM_004293GDA2
NM_003034ST8SIA12
NM_004363CEACAM52
NM_145207SPATA52
NM_014830ZBTB392
NM_000031ALAD2
NM_001003945ALAD2
NM_000457HNF4A2
NM_178849HNF4A2
NM_017644KLHL242
XM_001133055LOC7287602
NM_182497KRT402
NM_148886SMCR72
NM_139162SMCR72
NM_000084CLCN52
NM_145808MTPN2
NM_0010129942
NM_133330WHSC12
NM_001042424WHSC12
NM_133331WHSC12
NM_133335WHSC12
NM_006955ZNF33B2
NM_006974ZNF33A2
NM_006954ZNF33A2
NM_213589RAPH12
NM_033224PURB2
NM_019041MTRF1L2
XM_001129841LOC4409002
XM_498909LOC4409002
NM_001012763GNRHR2
NM_024940DOCK52
NM_020405PLXDC12
NM_1735692
NM_152371C1orf932
NM_007176C14orf12
NM_002999SDC42
NM_002518NPAS22
NM_145185MAP2K72
NM_138554TLR42
NM_014810CEP3502
NM_000800FGF12
NM_033137FGF12
NM_033136FGF12
NM_147129ALS2CL2
NM_182775ALS2CL2
NM_000217KCNA12
NM_173463DKFZp761B1072
NM_030647JHDM1D2
NM_032940POLR2C2
NM_019610RBMXL11
NM_002139RBMX1
NM_022351EFCBP11
NM_000253MTTP1
NM_181701QSOX21
NM_005296GPR231
NM_007211RASSF81
NM_000027AGA1
NM_198529EFCAB51
NM_001233CAV21
NM_198212CAV21
NM_153757NAP1L51
NM_005840SPRY31
XM_001127308FLJ376381
NM_152680TMEM1541
NM_000929PLA2G51
NM_0208271
NM_001039547GK51
NM_002084GPX31
NM_003523HIST1H2BE1
NM_138400NOM11
NM_006348COG51
NM_181733COG51
NM_178568RTN4RL11
NM_001034845GALNT171
NM_000818GAD21
NM_020177FEM1C1
NM_001079864TAX1BP11
NM_006024TAX1BP11
NM_018374TMEM106B1
NM_015935KIAA08591
NM_014955KIAA08591
NM_001007239KIAA08591
NM_022716PRRX11
NM_006902PRRX11
NM_002309LIF1
NM_130847AMOTL11
NM_199454PRDM161
NM_022114PRDM161
NM_005725TSPAN21
NM_001541HSPB21
NM_178457C20orf1741
NM_032471PKIB1
NM_181795PKIB1
NM_181794PKIB1
NM_025146NAT131
NM_0155511
NM_213594RFX41
NM_032491RFX41
NM_001010984C1orf1241
NM_0011128001
NM_021097SLC8A11
NM_0011128011
NM_0011128021
NM_173510CCDC1171
NM_015052HECW11
NM_0208231
NM_021240DMRT31
NM_021947SRR1
NM_024814CBLL11
NM_003369UVRAG1
NM_002635SLC25A31
NM_005888SLC25A31
NM_213611SLC25A31
NM_201431RASSF61
NM_177532RASSF61
NM_020861ZBTB21
NM_022784IQCH1
NM_003489NRIP11
NM_0208401
NM_004863SPTLC21
NM_0011025751
NM_194300CCDC1291
NM_206595ESRRG1
NM_001438ESRRG1
NM_206594ESRRG1
NM_080594RNPS11
NM_006711RNPS11
XM_001131621LOC7310911
XM_001130681LOC6434461
XM_001131599LOC7310911
XM_001130661LOC6434461
XM_001130637LOC6434461
XM_001130669LOC6434461
XM_932750LOC6434461
XM_001131605LOC7310911
XM_001131627LOC7310911
XM_001131584LOC7310911
XM_001131594LOC7310911
XM_001131602LOC7310911
XM_001130620LOC6434461
XM_001131589LOC7310911
XM_001130649LOC6434461
NM_003213TEAD41
NM_201443TEAD41
NM_201441TEAD41
NM_024636STEAP41
NM_024103SLC25A231
NM_020644TMEM9B1
NM_006020ALKBH11
NM_004976KCNC11
NM_017762MTMR101
NM_001024668LETMD11
NM_015416LETMD11
NM_173536GABRG11
NM_1992871
NM_007011ABHD21
NM_152924ABHD21
NM_014590ERVWE11
NM_021961TEAD11
NM_201629TJP21
NM_004817TJP21
NM_001040458ARTS-11
NM_020452ATP8B21
NM_033495KLHL131
NM_014935PLEKHA61
NM_0010996911
NM_003236TGFA1
NM_017593BMP2K1
NM_014804KIAA07531
NM_153620HOXA11
NM_005522HOXA11
NM_013230CD241
NM_002019FLT11
NM_012425RSU11
NM_152724RSU11
NM_199328CLDN81
NM_138782FCHO21
NM_014286FREQ1
NM_016631C21orf661
NM_002086GRB21
NM_203506GRB21
NM_001012968LOC1398861
NM_145912NFAM11
NM_015927TGFB1I11
NM_001042454TGFB1I11
NM_001024455RGAG41
NM_139071SMARCD11
NM_003076SMARCD11
NM_181351NCAM11
NM_000615NCAM11
NM_0010994341
NM_053064GNG21
NM_032317WBSCR181
NM_173563C6orf1461
NM_006762LAPTM51
NM_031435THAP21
NM_025164KIAA09991
NM_173670RGMB1
NM_0010839621
NM_003199TCF41
NM_0011112831
NM_000618IGF11
NM_0011112841
NM_001024372BAALC1
NM_024812BAALC1
XM_938853LOC2854841
XM_376303LOC2854841
NM_178010SOX51
NM_006940SOX51
NM_152989SOX51
NM_005786TSHZ11
NM_001003712OSBPL81
NM_020841OSBPL81
NM_006999POLS1
NM_002644PIGR1
NM_021813BACH21
NM_032124HDHD21
NM_033381COL4A51
NM_033380COL4A51
NM_000495COL4A51
NM_016011MECR1
NM_001024732MECR1
NM_001776ENTPD11
NM_0010981751
NM_0011055201
NM_002232KCNA31
NM_003030SHOX21
NM_006884SHOX21
NM_020428SLC44A21
NM_145168HSPC1051
NM_002278KRT321
NM_018489ASH1L1
NM_004090DUSP31
XM_001130218LOC7283401
XM_001126940LOC7303941
XM_928029RNF1871
XM_001129309RNF1871
NM_032818C9orf1001
NM_002787PSMA21
NM_000835GRIN2C1
NM_006267RANBP21
NM_012261C20orf1031
NM_022730COPS7B1
NM_014817KIAA06441
NM_006139CD281
NM_005109OXSR11
XM_930224LOC6471901
XM_941815LOC6471901
NM_017412FZD31
NM_003468FZD51
NM_005474HDAC51
NM_001015053HDAC51
XM_942952FLJ462841
XM_499123FLJ462841
NM_019009TOLLIP1
NM_198581ZC3H61
NM_173075APBB21
NM_207378SERPINA131
NM_021146ANGPTL71
NM_007210GALNT61
NM_014867KBTBD111
NM_012164FBXW21
NM_198261RSRC21
NM_198262RSRC21
NM_023012RSRC21
NM_031469SH3BGRL21
NM_015076CDC2L61
NM_172070ZNF6501
NM_182551LYCAT1
NM_001002257LYCAT1
NM_019051MRPL501
NM_002801PSMB101
NM_016025METTL91
NM_001077180METTL91
NM_006221PIN11
NM_001859SLC31A11
NM_020343C20orf741
NM_014217KCNK21
NM_001017424KCNK21
NM_001017425KCNK21
NM_173353TPH21
NM_173660DOK71
NM_153208IQCK1
NM_001005267C15orf211
NM_001005268C15orf211
NM_001005266C15orf211
NM_001005269C15orf211
NM_173609C15orf211
NM_013313YPEL11
NM_001013442EPGN1
NM_001001684FLJ458311
NM_130446KLHL61
NM_006244PPP2R5B1
NM_004273CHST31
NM_173065IL28RA1
NM_173064IL28RA1
NM_170743IL28RA1
NM_001268RCBTB21
NM_005966NAB11
NM_006357UBE2E31
NM_182678UBE2E31
NM_016529ATP8A21
NM_001009909LUZP21
NM_014633CTR91
NM_0251851
NM_001316CSE1L1
XM_001129158LIMS11
NM_001351DAZL1
NM_024766C2orf341
NM_006838METAP21
NM_022898BCL11B1
NM_138576BCL11B1
NM_018260ZNF7011
NM_203305FAM102A1
NM_001035254FAM102A1
NM_002504NFX11
NM_030641APOL61
NM_000890KCNJ51
NM_024761MOBKL2B1
NM_175080P2RX51
NM_002561P2RX51
NM_024873TNIP31
NM_015989CSAD1
NM_019099C1orf1831
NM_198926C1orf1831
NM_000293PHKB1
NM_017542POGK1
XM_001126914LOC7303941
XM_001126890LOC7303941
XM_001130168LOC7283401
XM_001130198LOC7283401
XM_001130208LOC7283401
XM_001126931LOC7303941
NM_004441EPHB11
NM_015326SRGAP21
NM_012316KPNA61
NM_024989PGAP11
NM_014571HEYL1
NM_015727TACR11
NM_001018115FANCD21
NM_020774MIB11
NM_207519ZAP701
NM_001079ZAP701
NM_000953PTGDR1
NM_021916ZNF701
NM_001031680RUNX31
NM_004350RUNX31
NM_020752GPR1581
XM_377073LOC3764751
NM_017643MBTD11
NM_017549EPDR11
XM_001133696LOC7316801
NM_144984C10orf721
NM_001033659FLJ358481
NM_153358ZNF7911
XM_001127604NFATC2IP1
NM_032815NFATC2IP1
NM_173473C10orf1041
NM_021035ZNFX11
NM_001013406KRIT11
NM_004912KRIT11
NM_194454KRIT11
NM_194456KRIT11
NM_194455KRIT11
NM_021167GATAD11
NM_030954RNF1701
NM_018097CEP271
NM_024076KCTD151
NM_182481BAGE31
NM_182482BAGE21
NM_207440FLJ264431
NM_182746MCM41
NM_005914MCM41
NM_015077SARM11
NM_006562LBX11
NM_014969WDR471
XM_209597LOC2854071
XM_939967LOC2854071
NM_015894STMN31
NM_173598KSR21
NM_013393FTSJ21
NM_001014839NCDN1
NM_014284NCDN1
NM_001014841NCDN1
NM_181654CPLX41
NM_001039199C20orf1211
NM_024331C20orf1211
XM_045290LOC1515791
XM_938633LOC1515791
NM_014670BZW11
NM_004707ATG121
NM_001295CCR11
XM_942991LOC6429341
NM_052941GBP41
XM_497648LOC4418691
XM_001126121LOC4418691
NM_198968DZIP11
NM_014934DZIP11
NM_198992SYT101
NM_015176FBXO281
NM_020229PRDM111
NM_004344CETN21
NM_152721DOK61
NM_014586HUNK1
NM_004024ATF31
NM_001040619ATF31
NM_052896CSMD21
NM_030636KIAA17061
NM_181333PRR51
NM_001017530PRR51
NM_015366PRR51
NM_001017528PRR51
NM_001017529PRR51
NM_001296CCBP21
NM_002857PEX191
NM_203365RAPH11
NM_001616ACVR2A1
NM_016061YPEL51
NM_015336ZDHHC171
NM_003329TXN1
NM_183416KIF1B1
NM_001023567GOLGA8B1
XM_001127034LOC7280801
XM_001127051LOC7280801
XM_001127002LOC7280801
XM_001127022LOC7280801
XM_001126877LOC7280471
XM_001126928LOC7280471
XM_001126392LOC7279091
XM_001126912LOC7280471
XM_001126407LOC7279091
XM_926998LOC6436991
XM_001126378LOC7279091
XM_001126904LOC7280471
XM_928167LOC6451371
NM_001012423GOLGA8E1
NM_001012420GOLGA8G1
NM_021912GABRB31
NM_000814GABRB31
NM_015132SNX131
NM_019001XRN11
NM_001042604XRN11
NM_000949PRLR1
NM_080764SUHW21
NM_173826C3orf231
NM_001797CDH111
NM_052811TRIM131
NM_213590TRIM131
NM_001007278TRIM131
NM_005798TRIM131
NM_001033855DCLRE1C1
NM_001033857DCLRE1C1
NM_001033858DCLRE1C1
NM_022487DCLRE1C1
XM_942964LOC2864111
XM_932619LOC2864111
NM_145102ZKSCAN51
NM_014569ZKSCAN51
NM_024332BRCC31
NM_001018055BRCC31
NM_001012337ROPN1B1
XM_940725ROPN1B1
NM_025049PIF11
NM_001039580MAP91
NM_025099C17orf681
NM_007047BTN3A21
NM_006994BTN3A31
NM_197974BTN3A31
NM_002532NUP881
NM_007114TMF11
NM_001040445ASB11
XM_934287LOC1448171
XM_945225LOC1448171
NM_005662VDAC31
NM_052947ALPK21
NM_001609ACADSB1
XM_001133623PTPLAD11
NM_001076778FAM107A1
NM_007177FAM107A1
NM_012096APPL11
NM_006852TLK21
NM_0011127071
XM_001125753MUC3B1
NM_144767AKAP131
NM_006738AKAP131
NM_007200AKAP131
NM_198289CIDEA1
NM_001279CIDEA1
NM_016540GPR831
XM_496436MIA31
XM_932541MIA31
XM_932548MIA31
XM_371369MIA31
XM_943876MIA31
XM_943869MIA31
XM_943873MIA31
NM_001008408RBM331
NM_053043PRR81
NM_006203PDE4D1
NM_0011046311
NM_207672GRIPAP11
NM_138981MAPK101
NM_138982MAPK101
NM_138980MAPK101
NM_002753MAPK101
NM_004849ATG51
NM_004229CRSP21
NM_000633BCL21
NM_002645PIK3C2A1
NM_002760PRKY1
NM_014613UBXD81
NM_173667FLJ375431
NM_001906CTRB11
XM_937029LOC6479711
NM_198459DENND2C1
NM_018131CEP551
NM_033138CALD11
NM_033139CALD11
NM_004342CALD11
NM_033157CALD11
NM_033140CALD11
NM_153332THEX11
NM_018370DRAM1
NM_021992TMSL81
XM_938779LOC6539721
NM_007276CBX31
NM_016587CBX31
NM_000978RPL231
NM_014568GALNT51
NM_198715PTGER31
NM_152671PIP5K31
NM_152271LONRF11
NM_005284GPR61
NM_005596NFIB1
NM_183394CADPS1
NM_003716CADPS1
NM_183393CADPS1
NM_0010976361
NM_0010976341
NM_0010976351
NM_001490GCNT11
NM_0010976331
NM_007295BRCA11
NM_007302BRCA11
NM_007304BRCA11
NM_007297BRCA11
NM_007296BRCA11
NM_007300BRCA11
NM_007305BRCA11
NM_007294BRCA11
NM_007299BRCA11
NM_007303BRCA11
NM_007298BRCA11
NM_0207331
XM_001127122LOC4013971
XM_001132317LOC4013971
XM_001127063LOC4013971
NM_002076GNS1
NM_078471MYO18A1
NM_203318MYO18A1
NM_000406GNRHR1
NM_001008406BCAP291
NM_006214PHYH1
NM_001037537PHYH1
NM_015565ZNF2941
NM_153018ZFP31
NM_003108SOX111
NM_001002026CLDN181
NM_016369CLDN181
NM_003417ZNF2641
XM_001126071LOC7304901
XM_001130605LOC7295561
NM_032295SLC37A31
NM_207113SLC37A31
NM_032025EIF2A1
NM_001463FRZB1
XM_499010LOC4410971
XM_943902LOC4410971
NM_019067GNL3L1
NM_003013SFRP21
NM_001009959KIAA11891
NM_020711KIAA11891
NM_153607LOC1532221
NM_013943CLIC41
NM_015147CEP681
XM_001126148LOC7305111
XM_001127639LOC7308861
XM_001126270LOC7279771
XM_001127626LOC7285181
NM_006639CYSLTR11
NM_014899RHOBTB31
NM_000740CHRM31
XM_001123368LOC7304131
NM_182501MTERFD21
NM_003403YY11
NM_020300MGST11
NM_145792MGST11
NM_145791MGST11
NM_145764MGST11
NM_022726ELOVL41
NM_203350ZRANB21
NM_005455ZRANB21
NM_001999FBN21
NM_001031681CTNS1
NM_004937CTNS1
NM_053054CATSPER11
NM_024770METTL81
NM_001083590FLJ202541
NM_017727FLJ202541
NM_025135FHOD31
NM_005108XYLB1
NM_017769KIAA13331
NM_002670PLS11
NM_002546TNFRSF11B1
NM_032042C5orf211
NM_001001668ZNF4701
NM_014848SV2B1
NM_005060RORC1
NM_001001523RORC1
NM_020552TCL61
NM_020553TCL61
NM_022744C16orf581
NM_001005609EDA1
NM_001399EDA1
NM_022148CRLF21
NM_033512TSPYL51
NM_024617ZCCHC61
NM_018482DDEF11
NM_177999ASB61
NM_017873ASB61
NM_018045BSDC11
NM_000281PCBD11
NM_032432ABLIM21
NM_153276SLC22A61
NM_153278SLC22A61
NM_153277SLC22A61
NM_004790SLC22A61
NM_000813GABRB21
NM_021911GABRB21
NM_002241KCNJ101
NM_152450FAM81A1
NM_021940SMAP11
NM_001044305SMAP11
NM_004650PNPLA41
NM_016577RAB6B1
NM_181705LYRM71
XM_001129789LOC7283261
NM_015059TLN21
NM_001033056GLUL1
NM_002065GLUL1
NM_001033044GLUL1
NM_153214FLJ374401
NM_139319SLC17A81
NM_014238KSR11
NM_199262SP61
NM_033637BTRC1
NM_003939BTRC1
NM_173694ATP11C1
NM_001010986ATP11C1
NM_182517C1orf2101
NM_0249361
XM_001127087FLJ439501
NM_007117TRH1
NM_001029858SLC35F11
NM_018184ARL8B1
NM_024645ZMAT41
NM_182508C13orf301
NM_173688FAM77D1
NM_012484HMMR1
NM_012485HMMR1
NM_139119YY1AP11
NM_139118YY1AP11
NM_031426C9orf581
NM_152757FLJ303131
NM_145202PRAP11
NM_138736GNAO11
NM_033143FGF51
XM_001130238LOC7282831
XM_001132687LOC7310871
NM_014862ARNT21
NM_001009934DNASE1L11
NM_001009932DNASE1L11
NM_006730DNASE1L11
NM_001009933DNASE1L11
NM_001106ACVR2B1
NM_000025ADRB31
NM_002357MXD11
XM_001131117LOC7318821
XM_001130751LOC7296011
NM_006282STK41
NM_001204BMPR21
NM_000719CACNA1C1
NM_144571CNOT6L1
NM_030643APOL41
NM_145660APOL41
NM_006846SPINK51
NM_0011105031
NM_003615SLC4A71
NM_014877HELZ1
NM_001040429PCDH171
NM_003382VIPR21
NM_017991FLJ100811
NM_014615KIAA01821
NM_024909C6orf1341
NM_172069PLEKHH21
NM_152632CXorf221
NM_007073BVES1
NM_147147BVES1
NM_152361EID2B1
NM_024946NIP301
NM_007195POLI1
NM_020850RANBP101
NM_017420SIX41
NM_198496VWA21
NM_019894TMPRSS41
NM_0010839471
NM_015185ARHGEF91
NM_032427MAML21
NM_012248SEPHS21
NM_003204NFE2L11
NM_080650ATPBD41
NM_020964KIAA16321
NM_015170SULF11
NM_024026MRP631
NM_182503DEADC11
NM_145166ZBTB471
NM_014155ZBTB441
NM_004405DLX21
NM_017842FLJ204891
NM_015257KIAA02861
NM_033225CSMD11
NM_012135FAM50B1
NM_015327SMG51
NM_031444C22orf131
NM_015503SH2B11
NM_003449TRIM261
NM_001007139IGF21
NM_000612IGF21
NM_005986SOX11
XM_001128800LOC7283511
XM_001130904LOC7309591
NM_013390TMEM21
NM_133374ZNF6181
NM_000451SHOX1
NM_003508FZD91
NM_002103GYS11
NM_006086TUBB31
NM_032833PPP1R15B1
NM_017919STX171
NM_000697ALOX121
NM_1524191
NM_014738KIAA01951
NM_198480ZNF6151
NM_015082FSTL41
XM_931757LOC6437141
XM_944020LOC6500441
NM_006361HOXB131
NM_182831TNT1
NM_032296FLYWCH11
NM_025000C2orf371
XM_001125106LOC7304211
NM_031488L3MBTL21
NM_033505SELI1
NM_030907C1orf891
NM_001197BIK1
NM_003598TEAD21
NM_016075VPS361
NM_021116ADCY11
NM_017596KIF21B1
NM_001039140C20orf271
XM_379543LOC4014421
NM_000598IGFBP31
NM_001013398IGFBP31
NM_020927KIAA15761
NM_152492CCDC271
XM_001134215PDPR1
NM_017990PDPR1
NM_001011708GTPBP91
NM_013341GTPBP91
NM_018561USP491
NM_001039887C19orf551
NM_205847GMPPA1
NM_013335GMPPA1
NM_197941ADAMTS61
NM_014849SV2A1
XM_001127102LOC6478591
XM_936921LOC6478591
NM_003222TFAP2C1
NM_004926ZFP36L11
NM_194247HNRPA31
NM_019119PCDHB91
NM_020228PRDM101
NM_199438PRDM101
NM_199437PRDM101
NM_199439PRDM101
NM_022462HIF3A1
NM_152794HIF3A1
NM_152795HIF3A1
NM_001017970TMEM30B1
NM_004460FAP1
NM_001001669FLJ416031
NM_178170NEK81
NM_020408LYRM41
NM_007061CDC42EP11
NM_152243CDC42EP11
NM_006534NCOA31
NM_181659NCOA31
NM_173683XKR61
NM_033025SYDE11
NM_004823KCNK61
NM_007188ABCB81
NM_005096ZMYM31
NM_201599ZMYM31
NM_144703LSM14B1
NM_175932PSMD131
NM_002817PSMD131
NM_138286ZNF6811
NM_206914FAM119B1
NM_015433FAM119B1
NM_020822KCNT11
NM_020882COL20A11
NM_153645NUP501
NM_007172NUP501
NM_174934SCN4B1
NM_080671KCNE41
NM_005180BMI11
NM_018941CLN81
NM_031892SH3KBP11
NM_052959PANX31
NM_147190LASS51
NM_004077CS1
NM_198324CS1
NM_194249DND11
NM_000848GSTM21
NM_000561GSTM11
NM_146421GSTM11
NM_000850GSTM41
NM_033516TPD52L31
NM_001830CLCN41
NM_144716CCDC121
NM_003217TEGT1
NM_0010985761
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_152902TIPRL1
NM_199131VAX11
NM_032788ZNF5141
XM_001129284LOC7290881
XM_001133596LOC7324301
NM_002310LIFR1
NM_018566YOD11
NM_015150RFTN11
NM_005941MMP161
NM_018409LRP2BP1
NM_003954MAP3K141
NM_006885ATBF11
NM_024830AYTL21
NM_0145101
NM_004513IL161
NM_172217IL161
NM_004861GAL3ST11
NM_018994FBXO421
NM_173797PAPD41
NM_018046AGGF11
NM_057178RFFL1
NM_001017368RFFL1
NM_017777MKS11
NM_001002926TWISTNB1
NM_025243SLC19A31
NM_133375DIS3L1
NM_032831TMEM142B1
NM_001075098MOCS11
NM_005943MOCS11
NM_005942MOCS11
NM_138928MOCS11
NM_001167BIRC41
NM_000836GRIN2D1
NM_002859PXN1
NM_001013706LSDP51
NM_022756C1orf1491
NM_006532ELL1
NM_001003788LYK51
NM_001003787LYK51
NM_153335LYK51
NM_001003786LYK51
NM_020796SEMA6A1
NM_138356SHF1
NM_138350THAP31
NM_002382MAX1
NM_145113MAX1
NM_145112MAX1
NM_020433JPH21
NM_153456HS6ST31
NM_015720PODXL21
NM_001012761RGMB1
NM_014844KIAA03291
NM_0010996661
NM_178120DLX11
NM_001038493DLX11
NM_207445FLJ395311
NM_006848CCDC85B1
NM_003008SEMG21
NM_0010982701
NM_002409MGAT31
NM_206918DEGS21
NM_000787DBH1
NM_001013690LOC4017201
NM_152374FLJ389841
NM_152219GJC11
XM_001126768LOC7279831
XM_001129328LOC7284181
NM_001017967MARVELD31
NM_0011023711
NM_024955FOXRED21
NM_019008SMCR7L1
NM_172014TNFSF141
NM_003807TNFSF141
NM_022350LRAP1
NM_0011001641
NM_0011001661
NM_014721PHACTR21
NM_0011001651
NM_006424SLC34A21
NM_138447ZNF6891
NM_018211RAVER21
NM_016937POLA11
XM_001130815LOC6478591
NM_016641MIR161
NM_005875EIF1B1
NM_015338ASXL11
NM_024811FLJ125291
NM_015316PPP1R13B1
NM_017877C2orf181
NM_172002HSCB1
NM_018151RIF11
NM_001030055ARHGAP51
NM_001173ARHGAP51
NM_181489ZNF4451
NM_024869GRRP11
NM_007168ABCA81
NM_145232ATPBD31
NM_020367PARP111
NM_001042535CENTG31
NM_194457UBE2J21
NM_194315UBE2J21
NM_058167UBE2J21
NM_194458UBE2J21
NM_016562TLR71
NM_152855IGLL11
NM_020070IGLL11
NM_014584ERO1L1
NM_145803TRAF61
NM_004620TRAF61
NM_015235CSTF2T1
NM_001001487ATP2C11
NM_001001486ATP2C11
NM_001001485ATP2C11
NM_021627SENP21
NM_016277RAB231
NM_183227RAB231
NM_015046SETX1
NM_024860SETD61
NM_182485CPEB21
NM_182646CPEB21
NM_173825RABL31
XM_926634LOC6532561
NM_0011055581
NM_020748INTS21
NM_000544TAP21
NM_015040PIP5K31
NM_002467MYC1
NM_0010992691
NM_032606CAPS21
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_180991SLCO4C11
XM_001134164ETV51
NM_004454ETV51
NM_000629IFNAR11
NM_175607CNTN41
NM_175612CNTN41
NM_000990RPL27A1
NM_017752TBC1D8B1
NM_016952CDON1
NM_000375UROS1
NM_001918DBT1
NM_144578C14orf321
NM_001040146CTF81
NM_001039690CTF81
NM_001040144CTF81
NM_031244SIRT51
NM_004171SLC1A21
NM_017761PNRC21
NM_203457PPIE1
NM_006112PPIE1
XM_001127995LOC2847011
XM_001127946LOC7286241
XM_934038LOC2847011
XM_001132979LOC7289241
XM_001129698LOC7292181
NM_013249ZNF2141
NM_001010883FAM102B1
NM_198281GPRIN31
NM_018403DCP1A1
NM_003632CNTNAP11
NM_014736KIAA01011
NM_001029989KIAA01011
NM_013322SNX101
NM_003431ZNF1241
XM_001124749LOC7304151
NM_022555HLA-DRB31
NM_133460ZNF4181
NM_014763MRPL191
XM_932285LOC6446521
XM_930805LOC6424261
NM_152369SLC44A31
NM_000647CCR21
XM_001133430LOC7292301
NM_181443BTBD31
NM_014962BTBD31
NM_031918KLF161
NM_001008784CD200R21
NM_014460CSDC21
NM_175862CD861
NM_006889CD861
NM_003458BSN1
NM_001110ADAM101
NM_198479TPRX11
NM_152237GAS2L11
NM_032319C2orf71
NM_014930ZNF5101
XM_941892LOC6542441
XM_930446LOC6536981
NM_0011050791
NM_001091ABP11
NM_152586USP541
NM_198181LOC4402951
XM_001130526LOC7286361
XM_001130555LOC7286361
XM_001130543LOC7286361
XM_001130536LOC7286361
XM_001129399LOC6423461
XM_928707LOC6423461
XM_925879LOC6423461
NM_014048MKL21
NM_001013618LOC913531
NM_133265AMOT1
NM_001040214TCBA11
NM_002083GPX21
NM_022343C9orf191
NM_021976RXRB1
NM_014573TMEM971
NM_024607PPP1R3B1
NM_033064ATCAY1
XM_929181CCDC351
XM_940957CCDC351
NM_001039771CBLN31
XM_942780SYNPO21
NM_001030288SPN1
NM_003123SPN1
NM_021574BCR1
NM_004327BCR1
NM_198841FAM120AOS1
NM_001247ENTPD61
NM_212558LOC4014981
NM_001002265MARCH81
NM_145021MARCH81
NM_001002266MARCH81
NM_001083621ZBTB401
NM_014870ZBTB401
NM_000334SCN4A1
NM_018995MOV10L11
NM_033305VPS13A1
NM_001018037VPS13A1
XM_933066LOC6436961
XM_929030LOC1615271
XM_925864LOC6423251
NM_139125MASP11
NM_019096GTPBP21
NM_017823DUSP231
NM_002508NID11
NM_003732EIF4EBP31
NM_020690MASK-BP31
XM_001129292MBOAT21
NM_138799MBOAT21
NM_139057ADAMTS171
NM_005126NR1D21
XM_001130839NR1D21
XM_001128716STX51
NM_003164STX51
NM_015912C8ORFK321
NM_001017392SFRS141
NM_000801FKBP1A1
NM_052968APOA51
NM_153223CCDC1001
NM_130463ATP6V1G21
NM_138282ATP6V1G21
NM_017812CHCHD31
NM_0010997761
NM_006731FCMD1
NM_001079802FCMD1
NM_203497COMMD61
NM_203495COMMD61
NM_000346SOX91
NM_015317PUM21
NM_000262NAGA1
NM_018343RIOK21
NM_014942ANKRD61
NM_201520SLC25A351
XM_001128367LOC4399491
XM_001129241LOC4399491
NM_012291ESPL11
NM_001321CSRP21
NM_144607CYB5D11
NM_018362LIN7C1
NM_020778ALPK31
NM_024884L2HGDH1
NM_005599NHLH21
NM_0011110611
NM_003121SPIB1
XM_001132928LOC7289691
NM_004807HS6ST11
NM_198462DCDC51
NM_152678FAM116A1
XM_001132771FAM116A1
NM_022131CLSTN21
NM_024794ABHD91
NM_020772NUFIP21
NM_020909EPB41L51
NM_000195HPS11
NM_014939KIAA10121
NM_001035518CEP2501
NM_007186CEP2501
XM_934619LOC2845771
XM_945015LOC2845771
NM_0024581
NM_178190ATPIF11
NM_178191ATPIF11
NM_016201AMOTL21
XM_001125898LOC7277621
NM_005933MLL1
NM_001083591CUGBP21
NM_001025077CUGBP21
NM_006561CUGBP21
NM_001025076CUGBP21
NM_033557YIF1B1
NM_001039671YIF1B1
NM_001039672YIF1B1
NM_001039673YIF1B1
NM_003441ZNF1411
NM_173354SNF1LK1
NM_198271LMOD31
NM_033510DISP21
XM_944564MGC158851
XM_378517MGC158851
NM_000383AIRE1
NM_000658AIRE1
NM_004475FLOT21
NM_148960CLDN191
NM_032547SCOC1
XM_001131395LOC7298101
XM_001126629LOC7306341
NM_002602PDE6G1
NM_016433GLTP1
NM_199050C21orf251
NM_015500C21orf251
NM_005864EFS1
NM_032459EFS1
XM_001133211LOC7290031
NM_024056TMEM106C1
NM_152442RAD9B1
NM_133637DQX11
XM_936312LOC6421601
NM_000878IL2RB1
NM_001001389CD441
NM_001001390CD441
NM_001001391CD441
NM_001001392CD441
NM_000610CD441
NM_198150ARSK1
NM_144963FAM91A11
NM_022048CSNK1G11
NM_020808SIPA1L21
NM_000448RAG11
NM_003399XPNPEP21
NM_002048GAS11
NM_144696C1orf1251
NM_182766C1orf1251
NM_198596SULF21
NM_018837SULF21
NM_019065EFCBP21
NM_006933SLC5A31
NM_182490ZNF2271
NM_139076CCDC981
NM_032825ZNF3821
NM_020141C1orf1191
XM_001125727LOC7277781
XM_001125757LOC7277781
NM_145753PHLDB21
NM_0011013961
NM_016357LIMA11
NM_012301MAGI21
NM_017773LAX11
NM_015101GLT25D21
NM_018375SLC39A91
NM_006241PPP1R21
NM_007017SOX301
NM_032222FLJ223741
NM_004795KL1
NM_130834OPA11
NM_015560OPA11
NM_130836OPA11
NM_130831OPA11
NM_130832OPA11
NM_130837OPA11
NM_130833OPA11
NM_130835OPA11
NM_015892GALNAC4S-6ST1
NM_145261DNAJC191
NM_000831GRIK31
NM_153033KCTD71
NM_002298LCP11
NM_021187CYP4F111
NM_001025780FAM108B11
NM_003566EEA11
NM_016332SEPX11
NM_012478WBP21
NM_031243HNRPA2B11
NM_002137HNRPA2B11
NM_000272NPHP11
NM_000686AGTR21
NM_177968PPM1B1
NM_016076C1orf1211
NM_0010854811
NM_022818MAP1LC3B1
NM_020717SHROOM41
NM_001977ENPEP1
NM_005513GTF2E11
NM_207351PRRT31
NM_205848SYT61
NM_006895HNMT1
NM_153688ZFP11
NM_002190IL17A1
NM_004028AQP41
NM_001650AQP41
NM_020918GPAM1
NM_080804COL13A11
NM_080807COL13A11
NM_080812COL13A11
NM_080810COL13A11
NM_080802COL13A11
NM_080808COL13A11
NM_080803COL13A11
NM_080809COL13A11
NM_080801COL13A11
NM_080800COL13A11
NM_080815COL13A11
NM_005203COL13A11
NM_080798COL13A11
NM_080814COL13A11
NM_080805COL13A11
NM_080813COL13A11
NM_080799COL13A11
NM_080806COL13A11
NM_080811COL13A11
NM_177483GPLD11
NM_005801EIF11
XM_001133601LOC7293231
XM_001133594LOC7293101
XM_001133600LOC7293211
NM_003272GPR137B1
NM_017791C14orf581
NM_015570AUTS21
NM_198584CA131
NM_001537HSBP11
NM_006577B3GNT21
NM_130469JDP21
NM_182563C16orf791
NM_002990CCL221
NM_032410HOOK31
NM_007067MYST21
NM_178509STXBP41
NM_033046RTKN1
NM_001015055RTKN1
NM_001015056RTKN1
NM_000361THBD1
NM_012306FAIM21
NM_014381MLH31
NM_001040108MLH31
NM_005453ZBTB221
NM_020384CLDN21
NM_006299ZNF1931
NM_032457PCDH71
NM_000407GP1BB1
NM_002688SEPT51
XM_001128324LOC7280461
NM_000368TSC11
NM_014393STAU21
NM_052909KIAA19091
NM_138395MARS21
NM_003342UBE2G11
NM_005727TSPAN11
NM_002547OPHN11
NM_005337NCKAP1L1
NM_004774PPARBP1
NM_000891KCNJ21
NM_021777ADAM281
NM_002571PAEP1
NM_001018049PAEP1
NM_005114HS3ST11
NM_052918SORCS11
NM_001013031SORCS11
NM_024700SNIP11
NM_016052RRP151
NM_005506SCARB21
NM_032499C15orf411
NM_177948ARMCX31
NM_177947ARMCX31
NM_016607ARMCX31
NM_000367TPMT1
NM_000015NAT21
NM_003128SPTBN11
NM_201555FHL21
NM_001450FHL21
NM_201557FHL21
NM_001039492FHL21
NM_173607C14orf241
NM_001079519C14orf241
NM_006717SPIN11
NM_012463ATP6V0A21
NM_020870SH3RF11
NM_000720CACNA1D1
NM_016258YTHDF21
NM_000276OCRL1
NM_001587OCRL1
NM_0152951
NM_015949C7orf201
NM_022474MPP51
NM_014860SUPT7L1
NM_004718COX7A2L1
NM_001039877STRN41
NM_013403STRN41
NM_147162IL11RA1
NM_020971SPTBN41
NM_001018075NR3C11
NM_001018077NR3C11
NM_001018076NR3C11
NM_001018074NR3C11
NM_001024094NR3C11
NM_000176NR3C11
NM_001020825NR3C11
NM_005465AKT31
NM_001001701LOC4011521
NM_004694SLC16A61
NM_005504BCAT11
NM_001081755ELN1
NM_001081754ELN1
NM_001081752ELN1
NM_000501ELN1
NM_001081753ELN1
NM_002657PLAGL21
NM_032869NUDCD11
NM_005387NUP981
NM_139131NUP981
XM_926815LOC6434951
XM_941175LOC6434951
NM_014774KIAA04941
NM_001001549GRB101
NM_001001555GRB101
NM_001001550GRB101
NM_005311GRB101
NM_001077445PHF161
NM_014735PHF161
NM_018416FOXJ21
NM_025224ZBTB461
NM_002655PLAG11
XM_001129224ITGB51
NM_030637DDHD11
XM_938268TBX181
NM_001080508TBX181
XM_001133975LOC7299181
NM_000950PRRG11
XM_001134047LOC7321271

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317