Predicted Off-targets for siRNA "uccuauggaaaucccuggu" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
Warning - siRNA is specific for only the antisense (guide) strand

17 hits were found for UCCUAUGGAAAUCCCUGGU (11 guide strand hits and 6 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_012395 PFTK1 2890 2908 UCCUAUGGAAAUaCCUuug58 4 12   false   <90%   4953
NM_018367 PHCA 3103 3121 UuuUAUGGAAAUCaCUGGU49 3 10 c false   <90%   3471
NM_001024210 S100A13 383 401 UCCaAUGGAAAUCCaUGGU38 2 10 c false   <90%   951
NM_000138 FBN1 1501 1519 UCCUAUGGuAAUuCCUGGg24 3 8   false   <90%   11626
NM_016290 UIMC1 1858 1876 aCCUcUGuAAAUCCCUGGU-15 3 11 bc false   <90%   2656
NM_058188 C21orf67 910 928 UCCUcUGGAcAUCCCUGGg-39 3 8 bc false   <90%   1071
NM_153823 GSG1 545 563 UCCUAUGGuuAUCCCUGGg-47 3 8 bc false   <90%   1942
NM_001080555 GSG1 658 676 UCCUAUGGuuAUCCCUGGg-47 3 8 bc false   <90%   2055
NM_031289 GSG1 669 687 UCCUAUGGuuAUCCCUGGg-47 3 8 bc false   <90%   2066
NM_001080554 GSG1 782 800 UCCUAUGGuuAUCCCUGGg-47 3 8 bc false   <90%   2179
NM_014945 ABLIM3 1781 1799 UCCUAUGcAgAUCCCUGGa-49 3 8 bc false   <90%   4256


Hits to Sense strand







AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_173489 FLJ40243 4899 4917 gCCAGGGAUUUCuAUAGGc82 3 11   false   <90%   5255
NM_024617 ZCCHC6 4161 4179 uCaAGGGAUUUCCAaAGGA53 3 11 c false   <90%   5648
NM_002996 CX3CL1 2525 2543 ACCAGGGAUUUCCAUgaug42 4 15 c false   <90%   3304
NM_144626 TMEM125 1358 1376 AuCAaGGAUUUCCAUAGGg32 3 13 bc false   <90%   1655
NM_001885 CRYAB 370 388 uCCAGGGAgUUCCAcAGGA13 3 7 c false   <90%   691
NM_030766 BCL2L14 916 934 uCCAGGGuUUUCCAcAGGA11 3 6 c false   <90%   2039


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1466
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_014388C1orf1073
NM_033505SELI3
XM_942780SYNPO23
NM_0010984843
NM_003759SLC4A43
XM_001128311LOC7314493
XM_001129750LOC7289993
XM_001125734LOC7277813
NM_000074CD40LG2
NM_0010996522
NM_199421SOCS42
NM_080867SOCS42
NM_014924KIAA08312
NM_005324H3F3B2
NM_020826SYT132
NM_198480ZNF6152
NM_003048SLC9A22
NM_024798SNX222
NM_001003407ABLIM12
NM_001003408ABLIM12
NM_002313ABLIM12
NM_006720ABLIM12
NM_025146NAT132
NM_152455ZSCAN292
NM_006628ARPP-192
NM_024577SH3TC22
NM_005504BCAT12
NM_001040665STEAP22
NM_152999STEAP22
NM_004742MAGI12
NM_005902SMAD32
NM_032826SLC35B42
NM_004852ONECUT22
NM_001024843TNRC6B2
NM_015088TNRC6B2
XM_001132080LOC7310072
NM_203464AK3L12
NM_013410AK3L12
NM_001005353AK3L12
XM_928632LOC6456192
NM_014848SV2B2
NM_001037325CCDC462
NM_145036CCDC462
NM_003412ZIC12
NM_0011013962
NM_001018058TFEC2
NM_012252TFEC2
NM_173598KSR22
NM_182515ZNF7142
NM_001037535SCML12
NM_001037540SCML12
NM_006746SCML12
NM_001037536SCML12
NM_015385SORBS12
NM_001034954SORBS12
NM_001034957SORBS12
NM_001034955SORBS12
NM_001034956SORBS12
NM_006434SORBS12
NM_024991SORBS12
NM_013411AK22
NM_014982PCNX2
NM_032900ARHGAP192
NM_000390CHM2
NM_024103SLC25A232
NM_003262TLOC12
NM_019593KIAA14342
NM_003474ADAM122
NM_153183NUDT102
NM_005431XRCC22
NM_022898BCL11B2
NM_138576BCL11B2
NM_018841GNG122
NM_032594INSM22
NM_001017980LOC2035472
NM_003966SEMA5A2
NM_001008537KIAA20222
NM_181489ZNF4452
NM_004171SLC1A22
NM_005440RND22
NM_014710GPRASP12
NM_0010994102
NM_0010994112
NM_024627C22orf292
NM_032737LMNB22
NM_024841FLJ142132
NM_005160ADRBK22
NM_013372GREM12
XM_001126144LOC7305102
XM_942958LOC6422362
XM_943005LOC6422362
NM_018247TMEM30A2
NM_018294CWF19L12
XM_001125756LOC7277882
NM_001018065NTRK22
NM_001018066NTRK22
NM_007361NID21
NM_006633IQGAP21
NM_001076682NCAM11
NM_017993ENOX11
NM_181776SLC36A21
XM_929714LOC6467621
XM_938418LOC6467621
XM_935722LOC6467621
NM_013256ZNF1801
NM_023929ZBTB101
NM_0011055391
XM_930931ZDHHC11B1
NM_015338ASXL11
NM_018353C14orf1061
NM_0333901
NM_020297ABCC91
NM_000912OPRK11
NM_033437PDE5A1
NM_001083PDE5A1
NM_033430PDE5A1
NM_004844SH3BP51
NM_001018009SH3BP51
NM_003093SNRPC1
NM_018452C6orf351
NM_0011110391
NM_152736ZNF1871
NM_001023560ZNF1871
NM_005096ZMYM31
NM_201599ZMYM31
NM_003034ST8SIA11
NM_001017924LRRC221
NM_005909MAP1B1
NM_006598SLC12A71
NM_182757IBRDC21
NM_001024660KALRN1
NM_007064KALRN1
NM_020150SAR1A1
NM_020796SEMA6A1
NM_012419RGS171
NM_030805LMAN2L1
NM_016575NT5DC31
NM_018361AGPAT51
NM_032013NDRG31
NM_022477NDRG31
NM_203371LOC3877581
NM_002025AFF21
NM_017662TRPM61
NM_198057TSC22D31
NM_001015881TSC22D31
NM_004089TSC22D31
NM_018157RIC8B1
NM_019044CCDC931
NM_004597SNRPD21
NM_177542SNRPD21
NM_0334031
NM_021637TMEM351
NM_016617UFM11
NM_015251ASCIZ1
NM_134325SLC26A91
NM_052934SLC26A91
XM_001126406LOC7279221
XM_001126391LOC7279221
XM_001126417LOC7279221
NM_054016FUSIP11
NM_015336ZDHHC171
NM_198836ACACA1
NM_198837ACACA1
NM_198834ACACA1
NM_198838ACACA1
NM_198839ACACA1
NM_001025233CLLU11
NM_015908ARS21
NM_182800ARS21
NM_020772NUFIP21
NM_0011031471
NM_0011031481
NM_0011031461
NM_015575TNRC151
NM_004444EPHB41
NM_203329CD591
NM_203331CD591
NM_203330CD591
NM_000611CD591
NM_001037165FOXK11
NM_001201BMP31
NM_153620HOXA11
NM_005522HOXA11
NM_000840GRM31
NM_015520MAGI11
NM_001033057MAGI11
NM_024080TRPM81
NM_006331EMG11
NM_1522831
NM_003626PPFIA11
NM_003451ZNF1771
NM_015450POT11
NM_001042594POT11
NM_176081TRDMT11
NM_004412TRDMT11
NM_176083TRDMT11
NM_001044722CSNK1G31
NM_001031812CSNK1G31
NM_001044723CSNK1G31
NM_004384CSNK1G31
NM_005156ROD11
NM_003189TAL11
NM_170606MLL31
NM_014079KLF151
NM_022832USP461
NM_018121C10orf61
NM_0011016761
NM_001039396MPEG11
NM_007249KLF121
NM_002843PTPRJ1
NM_014048MKL21
NM_023943TMEM1081
NM_0011045861
NM_024744ALS2CR81
NM_002182IL1RAP1
NM_152665TCTEX1D11
NM_153688ZFP11
NM_198153TREML41
NM_033631LUZP11
NM_016132MYEF21
NM_012479YWHAG1
NM_030641APOL61
NM_198181LOC4402951
XM_001129399LOC6423461
XM_928707LOC6423461
XM_925879LOC6423461
XM_001130526LOC7286361
XM_001130555LOC7286361
XM_001130543LOC7286361
XM_001130536LOC7286361
XM_925864LOC6423251
XM_929030LOC1615271
XM_933066LOC6436961
XM_940430LOC6488521
NM_004438EPHA41
NM_006329FBLN51
NM_004100EYA41
NM_172105EYA41
NM_172103EYA41
NM_000621HTR2A1
NM_177948ARMCX31
NM_177947ARMCX31
NM_016607ARMCX31
XM_001131068LOC7296961
XM_001129643LOC7314351
NM_153051MTMR31
NM_021090MTMR31
NM_153050MTMR31
NM_003161RPS6KB11
NM_030791SGPP11
NM_181643C1orf881
XM_934649C1orf341
XM_945958C1orf341
NM_033170B3GALT51
NM_033173B3GALT51
NM_033171B3GALT51
NM_006057B3GALT51
NM_033172B3GALT51
NM_012474UCK21
NM_0011004171
NM_175748C14orf1301
NM_017410HOXC131
NM_017637BNC21
NM_000240MAOA1
NM_001004342TRIM671
NM_001080391SP1001
NM_000849GSTM31
NM_152253CHKB1
NM_198698KRTAP12-41
NM_001007024GOSR11
NM_001007025GOSR11
NM_004871GOSR11
NM_001006656ZNF4731
NM_015428ZNF4731
NM_152866MS4A11
NM_021950MS4A11
NM_016606REEP21
NM_152670C2orf511
NM_023068SIGLEC11
NM_175872ZNF7921
NM_138715MSR11
NM_138716MSR11
NM_002998SDC21
XM_001130012LOC7315471
XM_001129569LOC7291771
NM_006941SOX101
XM_001128489LOC7285771
NM_033655CNTNAP31
NM_003298NR2C21
NM_000087CNGA11
NM_015686TMEM281
NM_198154TMEM951
NM_025236RNF391
NM_170769RNF391
NM_030660ATXN31
NM_004993ATXN31
NM_004319ASTN11
XM_001132703FLJ410471
XM_001133280FLJ410471
NM_022474MPP51
NM_000744CHRNA41
NM_003245TGM31
NM_015431TRIM581
NM_001033087C20orf1331
NM_080676C20orf1331
NM_078474TM2D31
NM_025141TM2D31
NM_030806C1orf211
NM_015265SATB21
NM_022465IKZF41
NM_0212431
NM_004279PMPCB1
NM_001040424PRDM151
NM_004491GRLF11
NM_033389SSH21
NM_182616C15orf381
NM_180991SLCO4C11
NM_000809GABRA41
XM_001133837LOC7320991
XM_001133987LOC7296811
NM_021994ZNF277P1
NM_000798DRD51
NM_020917ZFP141
NM_030962SBF21
NM_006583RRH1
NM_006080SEMA3A1
NM_018261EXOC11
NM_178237EXOC11
NM_001024924EXOC11
NM_006951TAF51
NM_016541GNG131
NM_032783CBR41
NM_003012SFRP11
NM_017944USP471
NM_012288TRAM21
NM_000031ALAD1
NM_001003945ALAD1
NM_005558LAD11
NM_018313PBRM11
NM_181042PBRM11
NM_018165PBRM11
NM_012400PLA2G2D1
NM_022733SMAP1L1
NM_212467CAPN31
NM_032415CARD111
NM_018196TMLHE1
NM_012320LYPLA31
XM_940667SDC31
NM_005603ATP8B11
NM_032632PAPOLA1
NM_024758AGMAT1
XM_001131702LOC1527421
XM_001128848LOC1527421
NM_024770METTL81
NM_032341DDI21
NM_057175NARG11
NM_020935USP371
NM_001033930UBA521
NM_003333UBA521
NM_022097LOC639281
NM_018933PCDHB131
NM_032446MEGF101
NM_032246RKHD31
NM_032828ZNF5871
NM_152475ZNF4171
NM_001039935ANKRD551
NM_024669ANKRD551
NM_003920TIMELESS1
NM_0011056591
NM_001080412ZBTB381
XM_001133510ZBTB381
NM_004973JARID21
NM_198887NUP431
NM_006564CXCR61
NM_006591POLD31
NM_212479ZMYND111
NM_004494HDGF1
NM_014872ZBTB51
NM_017671C20orf421
NM_207406CCDC41
NM_014181HSPC1591
XM_936869LOC1238761
NM_0011004271
NM_021159RAP1GDS11
NM_0011004281
NM_0011004291
NM_0011004261
NM_0011004301
NM_007057ZWINT1
NM_032997ZWINT1
NM_001005413ZWINT1
NM_003617RGS51
NM_020386HRASLS1
XM_929331LOC6464051
XM_940374LOC6512391
NM_021049MAGEA51
NM_024709C1orf1151
XM_371369MIA31
XM_943876MIA31
XM_943869MIA31
XM_943873MIA31
XM_496436MIA31
XM_932541MIA31
XM_932548MIA31
NM_198551MIA31
NM_005554KRT6A1
NM_021940SMAP11
NM_001044305SMAP11
NM_001526HCRTR21
NM_004857AKAP51
NM_013250ZNF2151
XM_934271LOC3882371
NM_001018122LOC4403501
XM_001132780LOC7287341
XM_001132813LOC7287411
NM_024516C16orf531
NM_001010845LOC1238761
NM_018141MRPS101
NM_032439PHYHIPL1
NM_003274TMEM11
NM_002033FUT41
NM_213598ZNF5431
NM_006915RP21
NM_032731TXNL51
NM_001001561GGA11
XM_001134369LOC7301071
NM_004483GCSH1
XM_945736LOC6540851
NM_001002265MARCH81
NM_145021MARCH81
NM_001002266MARCH81
NM_005596NFIB1
NM_015995KLF131
NM_001039886ZNF8081
NM_001031665ZNF816A1
NM_001008401ZNF7611
NM_001004301ZNF8131
NM_0010996941
NM_030972ZNF6111
NM_001008801ZNF4681
NM_199132ZNF4681
NM_006969ZNF281
NM_152391PQLC31
NM_017705PAQR51
NM_0011045541
XM_001128243LOC7287051
NM_001730KLF51
NM_000139MS4A21
NM_015202KIAA05561
NM_021202TP53INP21
NM_014521SH3BP41
NM_052840BRUNOL61
NM_001017915INPP5D1
NM_005541INPP5D1
NM_001002860BTBD71
NM_002547OPHN11
NM_182724CREM1
NM_182772CREM1
NM_181571CREM1
NM_182853CREM1
NM_182718CREM1
NM_182771CREM1
NM_182722CREM1
NM_183060CREM1
NM_182717CREM1
NM_182770CREM1
NM_182721CREM1
NM_183012CREM1
NM_182719CREM1
NM_182725CREM1
NM_183011CREM1
NM_182850CREM1
NM_182723CREM1
NM_182720CREM1
NM_182769CREM1
NM_183013CREM1
XM_941833LOC901131
XM_291077LOC901131
NM_006722MITF1
NM_000248MITF1
NM_198158MITF1
NM_198177MITF1
NM_198178MITF1
NM_198159MITF1
NM_017599VEZT1
NM_005642TAF71
XM_928701LOC6456911
XM_936790LOC6456911
XM_372050HNRPA1P41
XM_939887HNRPA1P41
NM_002136HNRPA11
NM_031157HNRPA11
NM_001024227ARF11
NM_001658ARF11
NM_001024228ARF11
NM_001024226ARF11
NM_001962EFNA51
XM_001128800LOC7283511
XM_001130904LOC7309591
NM_130438DYRK1A1
NM_101395DYRK1A1
NM_130436DYRK1A1
NM_001396DYRK1A1
NM_130437DYRK1A1
NM_198243ASB71
NM_144582TEX2611
NM_001079512LOC7807761
NM_015270ADCY61
NM_020983ADCY61
NM_022126LHPP1
NM_005161AGTRL11
NM_007219RNF241
NM_015353KCTD21
NM_175066DDX511
NM_002731PRKACB1
NM_182948PRKACB1
NM_012243SLC35A31
NM_012317LDOC11
NM_000922PDE3B1
NM_015116LRCH11
NM_004200SYT71
XM_943686SYT71
NM_012448STAT5B1
NM_024943TMEM1561
NM_001081461JMJD61
NM_001008406BCAP291
NM_052898XKR41
NM_002429MMP191
NM_138727ST7L1
NM_138728ST7L1
NM_017744ST7L1
XM_941644LOC3998811
NM_030935TSC22D41
NM_153347TMEM86A1
NM_017594DIRAS21
NM_018970GPR851
NM_001013691LOC4018981
NM_004745DLGAP21
NM_001005337PKP11
NM_000299PKP11
NM_005802TOPORS1
NM_003178SYN21
NM_014777KIAA01331
NM_005664MKRN31
NM_198868TBC1D9B1
NM_015043TBC1D9B1
NM_199050C21orf251
NM_015500C21orf251
XM_032945C21orf251
NM_0208111
NM_006136CAPZA21
NM_001038SCNN1A1
NM_017919STX171
XM_935369LOC6463291
XM_944654LOC6487161
XM_935966LOC6417981
NM_005911MAT2A1
NM_003149STAC1
NM_015892GALNAC4S-6ST1
NM_130466UBE3B1
NM_183415UBE3B1
NM_014828TOX41
XM_001130398LOC7316661
XM_001131009LOC7296801
XM_001125827LOC7278201
NM_017791C14orf581
NM_020462ERGIC11
NM_0010982131
NM_0010982121
NM_000861HRH11
NM_0010982111
NM_133646ZAK1
NM_152424FAM123B1
NM_020342SLC39A101
NM_001259CDK61
NM_001024960ARPC41
NM_005718ARPC41
NM_001024959ARPC41
NM_003319TTN1
NM_133437TTN1
NM_133378TTN1
NM_133432TTN1
NM_004321KIF1A1
NM_144644SPATA41
NM_001008925RCHY11
NM_0011031701
NM_0011031691
NM_0190041
NM_014224PGA51
NM_014942ANKRD61
NM_144949SOCS51
NM_014011SOCS51
NM_006943SOX121
NM_004613TGM21
NM_1449931
NM_018246CCDC251
NM_000599IGFBP51
NM_182537HTR3D1
NM_021642FCGR2A1
NM_003288TPD52L21
NM_199359TPD52L21
NM_199362TPD52L21
NM_199360TPD52L21
NM_199363TPD52L21
NM_199361TPD52L21
NM_012294RAPGEF51
NM_015011MYO161
NM_014448ARHGEF161
NM_006931SLC2A31
NM_031448C19orf121
NM_001031726C19orf121
NM_001012418LOC3401561
NM_144650ADHFE11
NM_018017C10orf1181
NM_182894CHX101
NM_020530OSM1
NM_017851PARP161
NM_178520TMEM1051
NM_001966EHHADH1
NM_001029884PLEKHG11
NM_001040152PEG101
NM_015068PEG101
NM_030643APOL41
NM_145660APOL41
XM_942240LOC6505571
NM_003337UBE2B1
NM_153261TMEM1881
NM_139321ATRN1
NM_001035235SRA11
NM_014746RNF1441
NM_178817MRAP1
NM_032727INA1
NM_030762BHLHB31
NM_152284CHMP4C1
NM_138992BACE21
XM_928866LOC6458951
XM_938922LOC6458951
NM_020732ARID1B1
NM_017519ARID1B1
NM_175863ARID1B1
XM_001133842LOC7294461
NM_022893BCL11A1
NM_006777ZBTB331
NM_017868TTC121
NM_015026MON21
NM_002241KCNJ101
NM_015097CLASP21
NM_005296GPR231
NM_001001664LOC3397451
NM_032780TMEM251
NM_002639SERPINB51
NM_198381ELF51
NM_001422ELF51
NM_014412CACYBP1
NM_001007214CACYBP1
NM_002277KRT311
XM_941142FTO1
NM_001080432FTO1
XM_944838LOC2857331
XM_379432LOC2857331
NM_145013C11orf451
NM_001720BMP8B1
NM_016321RHCG1
NM_178148SLC35B21
NM_001467SLC37A41
NM_001007099SCP21
NM_001007100SCP21
NM_001007250SCP21
NM_002979SCP21
NM_006729DIAPH21
NM_138348FAM105B1
NM_000332ATXN11
NM_022131CLSTN21
NM_018471ZC3H151
NM_004673ANGPTL11
NM_002583PAWR1
NM_007203PALM2-AKAP21
NM_147150PALM2-AKAP21
NM_001004065AKAP21
NM_004655AXIN21
NM_152673MUC201
NM_0010985161
NM_015020PHLPPL1
XM_001132378PTP4A21
XM_001132367PTP4A21
XM_001132372PTP4A21
XM_001132369PTP4A21
XM_001132357PTP4A21
XM_001133565LOC7314401
NM_2073601
NM_002086GRB21
NM_203506GRB21
NM_015328KIAA08281
NM_194457UBE2J21
NM_194315UBE2J21
NM_058167UBE2J21
NM_194458UBE2J21
NM_019072SGTB1
NM_001001938C9orf471
NM_006750SNTB21
NM_006850IL241
NM_181339IL241
NM_203451LOC4001201
NM_133478SLC4A51
NM_016373WWOX1
NM_006549CAMKK21
NM_153499CAMKK21
NM_153500CAMKK21
NM_172216CAMKK21
NM_172226CAMKK21
NM_005502ABCA11
NM_017650PPP1R9A1
NM_005048PTHR21
NM_024639ZNF322A1
NM_000686AGTR21
NM_031215CABLES21
NM_000834GRIN2B1
NM_001010971SAMD131
NM_001206KLF91
NM_005857ZMPSTE241
NM_004093EFNB21
NM_001618PARP11
NM_203437AFTPH1
NM_001002243AFTPH1
NM_017657AFTPH1
NM_018062FANCL1
NM_015352POFUT11
NM_004795KL1
XM_039733KIAA09531
XM_940464KIAA09531
NM_139012MAPK141
NM_139014MAPK141
NM_001315MAPK141
NM_138426GLCCI11
NM_002853RAD11
NM_133377RAD11
NM_020319ANKMY21
NM_0153061
NM_198990NAPE-PLD1
NM_005204MAP3K81
NM_005257GATA61
NM_002539ODC11
NM_012395PFTK11
NM_001987ETV61
NM_198271LMOD31
NM_053053TADA1L1
XM_379100LOC4009581
XM_945436LOC4009581
NM_001039570KREMEN11
NM_001039571KREMEN11
XM_945019LOC6434411
XM_933124LOC6434411
NM_024759NPAL21
NM_014438IL1F81
NM_014892RBM161
NM_002906RDX1
NM_001031711ERGIC11
NM_052896CSMD21
NM_014411NAG81
NM_019558HOXD81
NM_020526EPHA81
NM_005933MLL1
NM_000369TSHR1
NM_194434VAPA1
NM_003574VAPA1
NM_016173HEMK11
NM_017563IL17RD1
NM_001080973IL17RD1
NM_152574C9orf521
NM_005531IFI161
NM_000351STS1
NM_004391CYP8B11
NM_018509LRRC591
NM_018200HMG20A1
NM_003286TOP11
NM_014959CARD81
NM_020400GPR921
NM_138619GGA31
NM_014001GGA31
NM_199124C11orf631
NM_014167CCDC591
NM_003819PABPC41
NM_005180BMI11
NM_001080437SNED11
XM_940984SNED11
NM_018082POLR3B1
NM_004736XPR11
NM_001082959SCARB11
NM_005505SCARB11
NM_017644KLHL241
NM_005220DLX31
XM_941807NHSL11
XM_496826NHSL11
NM_003558PIP5K1B1
NM_145286STOML31
NM_152573RASEF1
NM_020909EPB41L51
NM_014646LPIN21
NM_002718PPP2R3A1
NM_181897PPP2R3A1
NM_182557BCL9L1
NM_020546ADCY21
NM_148170CTSC1
NM_181505PPP1R1B1
NM_032192PPP1R1B1
NM_152860SP71
NM_032242PLXNA11
NM_007073BVES1
NM_147147BVES1
NM_021625TRPV41
NM_147204TRPV41
NM_001018046YSK41
NM_025052YSK41
NM_017759FLJ203091
NM_017641KIF21A1
NM_012328DNAJB91
NM_001077440BCLAF11
NM_001077441BCLAF11
NM_014739BCLAF11
NM_018351FGD61
XM_001126090LOC7281461
XM_001129423LOC7291371
XM_001129476LOC2864341
NM_139248LIPH1
NM_203463LASS61
NM_015185ARHGEF91
NM_001007097NTRK21
NM_024873TNIP31
NM_012384GMEB21
NM_206933USH2A1
XM_942428DUSP271
NM_001080426DUSP271
NM_000125ESR11
NM_153712TTL1
NM_024674LIN281
NM_000157GBA1
NM_001005742GBA1
NM_001005749GBA1
NM_001005750GBA1
NM_001005741GBA1
NM_0010987901
NM_021242MID1IP11
NM_0010987911
NM_014918CHSY11
NM_138771CCDC1261
NM_000354SERPINA71
NM_001106ACVR2B1
NM_015568PPP1R16B1
NM_052853ADCK21
NM_001031681CTNS1
NM_004937CTNS1
NM_138383ABBA-11
NM_024052C17orf391
NM_198510ITIH5L1
XM_929242LOC6463011
NM_152588TMTC21
NM_181435C1QTNF31
NM_030945C1QTNF31
XM_001130627LOC7295591
NM_018383WDR331
NM_030648SETD71
NM_052837SCAMP31
NM_005698SCAMP31
NM_0010853771
NM_002387MCC1
NM_016272TOB21
NM_000429MAT1A1
NM_002158FOXN21
NM_207372SH2D4B1
NM_016298FBXO401
NM_016605FAM53C1
NM_0010853681
NM_001009960ZNF6551
NM_0010839561
NM_138494ZNF6551
NM_006690MMP241
NM_020845PITPNM21
NM_006212PFKFB21
NM_020205OTUD7B1
NM_024029YIPF21
NM_001197BIK1
NM_020786PDP21
NM_005688ABCC51
NM_145059FUK1
NM_020802KIAA13771
NM_014381MLH31
NM_001040108MLH31
NM_014482BMP101
NM_003503CDC71
NM_176877INADL1
NM_152765C8orf461
NM_001904CTNNB11
NM_0010982091
NM_012089ABCB101
NM_020453ATP10D1
NM_000748CHRNB21
NM_002399MEIS21
NM_172316MEIS21
NM_170674MEIS21
NM_170677MEIS21
NM_172315MEIS21
NM_152412ZNF5721
NM_020792AADACL11
XM_037557KIAA09841
XM_939476KIAA09841
NM_002842PTPRH1
NM_002444MSN1
NM_001146ANGPT11
NM_175736FMNL31
NM_198900FMNL31
NM_020422TMEM1591
NM_022166XYLT11
XM_001125986LOC2838241
NM_052966FAM129A1
NM_001010867C1orf691
NM_007283MGLL1
NM_001003794MGLL1
NM_014395DAPP11
NM_0324531
NM_016169SUFU1
NM_006801KDELR11
NM_002357MXD11
NM_024587TMEM531
NM_001010924C10orf381
XM_931774LOC6437491
XM_944444LOC6437491
NM_018046AGGF11
NM_203404AMPD21
NM_139156AMPD21
NM_004037AMPD21
NM_004124GMFB1
NM_016289CAB391
NM_006918SC5DL1
NM_001024956SC5DL1
NM_175856CHSY-21
NM_153703PODN1
NM_022170EIF4H1
NM_031992EIF4H1
NM_207015NAALADL21
NM_001024611LOC3399771
NM_024676C1orf1131
NM_001009997C10orf621
NM_0149871
NM_052870SNAG11
NM_005474HDAC51
NM_001015053HDAC51
NM_012121CDC42EP41
NM_001330CTF11
NM_0808261
NM_006470TRIM161
NM_001037330TRIM16L1
NM_000092COL4A41
NM_006348COG51
NM_181733COG51
NM_006282STK41
NM_020405PLXDC11
NM_177986DSG41
NM_020770CGN1
NM_133477SYNPO21
XM_942776SYNPO21
XM_936336SYNPO21
NM_004468FHL31
NM_014636RALGPS11
NM_001033910TRAF51
NM_145759TRAF51
NM_004619TRAF51
NM_144963FAM91A11
NM_013365GGA11
NM_001001560GGA11
NM_005904SMAD71
NM_203282ZNF2541
NM_080725SRXN11
NM_000103CYP19A11
NM_031226CYP19A11
NM_001424EMP21
NM_178457C20orf1741
NM_138817SLC7A131
NM_015070ZC3H131
NM_0010996661
NM_052910SLITRK11
NM_001040450FAM63B1
NM_001040453FAM63B1
NM_147202C9orf251
NM_032873STS-11
NM_016620ZNF6441
NM_201269ZNF6441
NM_032186ZNF6441
NM_001042669ARHGAP241
NM_001025616ARHGAP241
NM_031305ARHGAP241
NM_080664C14orf1261
NM_017949CUEDC11
NM_002751MAPK111
NM_006974ZNF33A1
NM_006954ZNF33A1
NM_006955ZNF33B1
NM_032174TOMM40L1
NM_001017440CALN11
NM_031468CALN11
NM_033410ZNF7641
NM_014402UQCRQ1
NM_001561TNFRSF91
NM_004694SLC16A61
NM_032052PATZ11
NM_014634PPM1F1
NM_014903NAV31
NM_004285H6PD1
NM_182758WDR721
NM_001012642GRAMD21
NM_012214MGAT4A1
NM_015227POFUT21
NM_133634POFUT21
NM_133635POFUT21
NM_203394E2F71
NM_013352DSE1
NM_001080976DSE1
NM_001037293PALM21
NM_053016PALM21
NM_002009FGF71
XM_001132771FAM116A1
NM_152678FAM116A1
NM_020872CNTN31
NM_001336CTSZ1
NM_0010985271
NM_006605RFPL21
NM_001077484SLC38A11
NM_030674SLC38A11
NM_004035ACOX11
NM_007292ACOX11
NM_015049TRAK21
NM_006590USP391
NM_007175ERLIN21
NM_012219MRAS1
NM_0010850491
NM_006725CD61
NM_020834HOMEZ1
NM_017645FAM29A1
NM_000168GLI31
NM_002118HLA-DMB1
NM_000084CLCN51
NM_015035ZHX31
NM_002993CXCL61
NM_033656BRWD11
XM_001128998BRUNOL41
NM_020180BRUNOL41
NM_145025C6orf1991
NM_015888HOOK11
NM_0175521
NM_001009993LOC1300741
NM_0151881
NM_019600KIAA13701
NM_152785GCET21
NM_001008756GCET21
NM_002048GAS11
NM_138444KCTD121
NM_014299BRD41
NM_000681ADRA2A1
NM_014023WDR371
NM_025047ARL141
NM_174934SCN4B1
NM_007315STAT11
NM_020859SHROOM31
NM_024328THTPA1
NM_015062PPRC11
NM_003348UBE2N1
NM_032206NLRC51
NM_207325DPY19L31
NM_001042601TTC141
NM_004155SERPINB91
NM_0010994081
NM_001889CRYZ1
NM_016422RNF1411
NM_178586PPP2R5C1
NM_002719PPP2R5C1
NM_003131SRF1
NM_005831CALCOCO21
NM_015569DNM31
NM_145698ACBD51
NM_001042473ACBD51
NM_198545C1orf1871
NM_022091ASCC31
NM_014765TOMM201
NM_003394WNT10B1
NM_023075MPPE11
NM_006857RY11
NM_173359EIF4E31
NM_014309RBM91
NM_001082576RBM91
NM_001082577RBM91
NM_001031695RBM91
NM_001082578RBM91
NM_001082579RBM91
NM_017785CCDC991
NM_021045ZNF2481
NM_002736PRKAR2B1
NM_021130PPIA1
NM_0011111131
NM_005339HIP21
NM_0011111121
NM_001040402DCUN1D41
NM_015115DCUN1D41
NM_017741C4orf301
NM_207337AMN11
NM_032025EIF2A1
NM_182898CREB51
NM_004904CREB51
NM_001011666CREB51
NM_182899CREB51
NM_198829RAC11
NM_006908RAC11
NM_018890RAC11
NM_000318PXMP31
NM_001079867PXMP31
NM_004206SEC22C1
NM_006922SCN3A1
NM_001081677SCN3A1
NM_001081676SCN3A1
NM_172000TEDDM11
NM_002424MMP81
NM_015278SASH11
NM_198686RAB151
NM_015033FNBP11
NM_080669SLC46A11
NM_001039770FLJ450321
NM_002242KCNJ131
NM_015221DNMBP1
NM_002775HTRA11
NM_021035ZNFX11
NM_001663ARF61
NM_005047PSMD51
NM_152373ZNF6841
NM_001009909LUZP21
NM_004067CHN21
NM_001039936CHN21
NM_207380FLJ433391
NM_001018075NR3C11
NM_001018077NR3C11
NM_001018076NR3C11
NM_001018074NR3C11
NM_001024094NR3C11
NM_000176NR3C11
NM_001020825NR3C11
NM_183230IKZF31
NM_183229IKZF31
NM_183231IKZF31
NM_183228IKZF31
NM_183232IKZF31
NM_012481IKZF31
NM_001037232DKFZp779O1751
NM_004403DFNA51
NM_005149TBX191
NM_014733ZFYVE161
NM_0011052511
NM_001033925TIAL11
NM_003252TIAL11
NM_198276TMEM171
NM_152851MS4A6A1
NM_152852MS4A6A1
NM_032800C1orf1981
NM_002514NOV1
NM_0011004111
NM_024581C6orf601
NM_003590CUL31
XM_001127757LOC7309281
XM_001126412LOC7280401
NM_173851SLC30A81
NM_000596IGFBP11
NM_182833GDPD41
NM_006674HCP51
NM_001025108AFF31
NM_002285AFF31
NM_004654USP9Y1
NM_024997ATF7IP21
NM_003748ALDH4A11
NM_001076552ACSS21
NM_018677ACSS21
NM_0207091
NM_130459TOR2A1
NM_001938DR11
NM_0152761
NM_080876DUSP191
NM_020988GNAO11
NM_005346HSPA1B1
NM_001040146CTF81
NM_001039690CTF81
NM_001040144CTF81
NM_020240CDC42SE21
NM_001038702CDC42SE21
NM_203446SYNJ11
NM_003895SYNJ11
NM_001879MASP11
NM_003314TTC11
NM_020724RNF1501
NM_002616PER11
NM_032818C9orf1001
NM_007231SLC6A141
NM_017966VPS37C1
NM_0010997841
NM_016376ANKFY11
NM_003909CPNE31
NM_018238AGK1
NM_001605AARS1
NM_005266GJA51
NM_181703GJA51
NM_178011LRRTM31
NM_152780MAP7D21
NM_001676ATP12A1
NM_173799VSIG91
NM_014607UBXD21
NM_014005PCDHA91
NM_006809TOMM341
NM_017506OR7A51
NM_0124011
NM_198467RSBN1L1
NM_152624DCP21
NM_001024680LOC5542511
NM_021629GNB41
XM_001130409LOC7294881
NM_000348SRD5A21
NM_080743SRrp351
NM_004888ATP6V1G11
NM_015570AUTS21
NM_152519FLJ238611
NM_170768ZFP911
NM_003452ZNF1891
NM_197977ZNF1891
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_0011132391
NM_022740HIPK21
NM_001024380TM2D21
NM_078473TM2D21
NM_001024381TM2D21
NM_031940TM2D21
NM_000216KAL11
NM_000217KCNA11
NM_014757MAML11
XM_001126853MAML11
NM_138999NETO11
NM_173484KLF171
NM_018364RSBN11
NM_013231FLRT21
NM_144775SMCR81
NM_014421DKK21
NM_207440FLJ264431
NM_198274SMYD11
NM_153048FYN1
NM_002037FYN1
NM_153047FYN1
NM_001284AP3S11
NM_199169TMEPAI1
NM_199170TMEPAI1
NM_199171TMEPAI1
NM_020182TMEPAI1
NM_001010980C1orf1301
XM_936831IQSEC31
NM_005216DDOST1
NM_018048FLJ102921
NM_145893A2BP11
NM_145892A2BP11
NM_145891A2BP11
NM_021116ADCY11
NM_006328RBM141
NM_018440PAG11
XM_939663KIAA15531
NM_001080450KIAA15531
NM_030813CLPB1
NM_014763MRPL191
NM_001334CTSO1
NM_001010879ZIK11
NM_152496MANEAL1
NM_001031740MANEAL1
NM_175883OR7D21
NM_016453NCKIPSD1
NM_184231NCKIPSD1
NM_014504RABGEF11
NM_001031804MAF1
NM_020933ZNF3171
NM_016651DACT11
NM_001079520DACT11
NM_004057S100G1
NM_213602CD33L31
NM_007271STK381
NM_025009CEP1351
NM_012465TLL21
NM_002111HD1
NM_007086WDHD11
NM_001008396WDHD11
NM_138967SCAMP51
NM_003740KCNK51
NM_031954KCTD101
NM_199328CLDN81
NM_175747OLIG31
NM_004947DOCK31
NM_032440LCOR1
NM_032741AGPAT11
NM_006411AGPAT11
NM_152900MAGI31
NM_020429SMURF11
NM_181349SMURF11
NM_020122KCMF11
XM_001133393KCMF11
NM_001706BCL61
NM_138931BCL61
NM_014165C6orf661
NM_001690ATP6V1A1
NM_152687C5orf291
NM_016571GLULD11
NM_016626RKHD21
NM_005915MCM61
NM_018027FRMD4A1
NM_004205USP21
NM_153365TAPT11
NM_019114EPB41L4B1
NM_030639BHLHB91
NM_024667VPS37B1
NM_005955MTF11
NM_002594PCSK21
NM_004566PFKFB31
NM_030796ECOP1
XM_001129280LOC7290861
XM_938287LOC6539301
NM_032977CASP101
NM_001230CASP101
NM_005971FXYD31
NM_021910FXYD31
NM_018260ZNF7011
NM_005159ACTC11
NM_001039840CHIC11
NM_138638CFL21
NM_021914CFL21
NM_198513PHF20L11
NM_130847AMOTL11
NM_002310LIFR1
NM_194286KIAA18531
NM_178006STARD131
NM_178007STARD131
NM_052851STARD131
NM_014372RNF111
NM_016946F11R1
NM_013437LRP121
NM_015886PI151
NM_001010883FAM102B1
NM_020957PCDHB161
NM_003070SMARCA21
NM_139045SMARCA21
NM_016943TAS2R31
NM_057749CCNE21
NM_018254RCOR31
NM_001535PRMT21
NM_206962PRMT21
NM_003128SPTBN11
NM_016079VPS241
NM_001005753VPS241
NM_0011004211
NM_0011004201
NM_017447C21orf911
NM_022756C1orf1491
NM_022080NAPB1
NM_015046SETX1
NM_005313PDIA31
NM_133370YTHDC11
NM_001031732YTHDC11
NM_002318LOXL21
NM_001014380KATNAL11
NM_032116KATNAL11
NM_178539FAM19A21
NM_024761MOBKL2B1
NM_152332MTAC2D11
NM_005944CD2001
NM_001004196CD2001
NM_002334LRP41
NM_138793CANT11
NM_152606ZNF5401
NM_001453FOXC11
NM_005177ATP6V0A11
NM_177972TUB1
NM_003320TUB1
NM_003485GPR681
NM_153456HS6ST31
NM_025218ULBP11
NM_007054KIF3A1
NM_001010922C1orf1781
NM_001033047NPNT1
NM_014035SNX241
NM_001468GAGE11
NM_001040663GAGE11
NM_001476GAGE61
NM_001474GAGE41
NM_001477GAGE7B1
NM_012196GAGE81
NM_0010854411
NM_001475GAGE51
NM_001472GAGE21
XM_001130950GAGE12G1
XM_001130758LOC7293961
XM_001130816LOC7294081
XM_001130882LOC7294221
NM_0010984101
NM_0010984081
NM_0010984071
NM_0010984061
XM_001130982LOC7294471
XM_001130966LOC7294421
XM_001130914LOC7294311
NM_0010984181
NM_0010984091
XM_001130991LOC7294471
NM_0010984121
NM_0010984131
NM_0010984111
NM_021809TGIF21
NM_000539RHO1
NM_005276GPD11
NM_001039656MTL51
NM_001003760KLHL311
NM_001776ENTPD11
NM_0010981751
NM_016400HYPK1
NM_006141DYNC1LI21
NM_005551KLK21
NM_001002231KLK21
NM_175061JAZF11
NM_001407CELSR31
NM_004849ATG51
NM_139281WDR361
NM_015564LRRTM21
NM_024795TM4SF201
NM_019107C19orf101
NM_139241FGD41
NM_001031679MSRB31
NM_198080MSRB31
NM_001025247TAF5L1
NM_000771CYP2C91
NM_014996PLCH11
NM_015041CLUAP11
NM_024793CLUAP11
NM_015530GORASP21
NM_006252PRKAA21
NM_004484GPC31
NM_017769KIAA13331
NM_022659EBF21
NM_172241CTAGE11
NM_007360KLRK11
NM_198904GABRG21
NM_004270CRSP91
NM_0011008161
NM_001010862SPIN31
NM_017700FLJ201841
NM_001030059PPAPDC1A1
NM_000811GABRA61
NM_014899RHOBTB31
NM_006315PCGF31
NM_0212141
NM_014912CPEB31
NM_018112TMEM38B1
XM_001126195LOC7279421
NM_018374TMEM106B1
NM_000609CXCL121
XM_001133646LOC7324371
NM_032999GTF2I1
NM_033000GTF2I1
NM_033001GTF2I1
NM_001518GTF2I1
NM_001039029LRTM21

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317