Predicted Off-targets for siRNA "guuugccauaaagccaggu" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

13 hits were found for GUUUGCCAUAAAGCCAGGU (4 guide strand hits and 9 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_175727 IL5RA 1700 1718 aUUUGCCAUgAAGCCAGug7 4 8 c false   <90%   1956
NM_175724 IL5RA 1768 1786 aUUUGCCAUgAAGCCAGug7 4 8 c false   <90%   2024
NM_000285 PEPD 967 985 GggUGCCAUgAAGCCAGGU-13 3 9 bc false   <90%   1888
NM_014149 HSPC049 2747 2765 cUUUGCCAUggAGCCAGGU-46 3 8 c false   <90%   3179


Hits to Sense strand










AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_006675 TSPAN9 4245 4263 uCCUGGCUUUAUGGaAcAC49 3 13 c false   <90%   4338
NM_020839 WDR48 2757 2775 uCCUGGCUUUgUGGCAAcC34 3 9 c false   <90%   3705
NM_001033520 WIPI2 2806 2824 gguUGGCUUUAcGGCAAAC33 4 8   false   <90%   4295
NM_001033519 WIPI2 2913 2931 gguUGGCUUUAcGGCAAAC33 4 8   false   <90%   4402
NM_016003 WIPI2 2946 2964 gguUGGCUUUAcGGCAAAC33 4 8   false   <90%   4435
NM_001033518 WIPI2 2967 2985 gguUGGCUUUAcGGCAAAC33 4 8   false   <90%   4456
NM_015610 WIPI2 3000 3018 gguUGGCUUUAcGGCAAAC33 4 8   false   <90%   4489
NM_032888 COL27A1 4689 4707 ACCUGGCUUgAUGGgAAAg-12 3 9 c false   <90%   5583
NM_144490 AKAP11 5275 5293 ACCUGGCUUgAUGGCAuuu-13 4 9 c false   <90%   5947


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1688
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_024915GRHL24
NM_006546IGF2BP13
NM_001017440CALN13
NM_031468CALN13
NM_001023567GOLGA8B3
NM_025222TMEM1133
NM_001776ENTPD13
NM_0010981753
NM_014286FREQ3
NM_003681PDXK3
NM_181489ZNF4453
NM_003324TULP33
NM_173598KSR23
NM_002417MKI673
XM_928464LOC1465173
NM_153184CADM22
NM_002293LAMC12
NM_198560LHFPL42
NM_004614TK22
NM_020673RAB22A2
NM_000994RPL322
NM_001007074RPL322
NM_001007073RPL322
NM_015352POFUT12
NM_006283TACC12
XM_929433LOC6440062
XM_939111LOC6500202
NM_002938RNF42
NM_001037165FOXK12
NM_138999NETO12
NM_212558LOC4014982
NM_022459XPO42
NM_002677PMP22
NM_052966FAM129A2
NM_001003652SMAD22
NM_005901SMAD22
NM_170740ALDH5A12
NM_001080ALDH5A12
NM_018658KCNJ162
NM_170742KCNJ162
NM_170741KCNJ162
NM_014432IL20RA2
NM_207446LOC4004512
NM_005933MLL2
NM_007011ABHD22
NM_152924ABHD22
NM_004430EGR32
XM_001130047EGR32
NM_020655JPH32
NM_182767SLC6A152
NM_001026213CYP11B12
NM_000497CYP11B12
NM_015071ARHGAP262
NM_004386NCAN2
NM_0147222
NM_024817THSD42
XM_941380UNC13C2
NM_001080534UNC13C2
NM_006731FCMD2
NM_001079802FCMD2
NM_033389SSH22
NM_012301MAGI22
NM_001025077CUGBP22
NM_022748TNS32
NM_018375SLC39A92
NM_016255FAM8A12
NM_003131SRF2
NM_018048FLJ102922
NM_182551LYCAT2
NM_001002257LYCAT2
XM_001130884LOC7296392
XM_001130664LOC7317562
NM_018085IPO92
NM_001025079CD472
NM_001777CD472
NM_198793CD472
NM_080669SLC46A12
NM_130830LRRC152
NM_015385SORBS12
NM_001034954SORBS12
NM_001034957SORBS12
NM_001034955SORBS12
NM_001034956SORBS12
NM_006434SORBS12
NM_024991SORBS12
NM_001012423GOLGA8E2
NM_001012452FLJ326792
NM_001012420GOLGA8G2
XM_928167LOC6451372
XM_926998LOC6436992
XM_001126392LOC7279092
XM_001126407LOC7279092
XM_001126378LOC7279092
XM_001126877LOC7280472
XM_001126928LOC7280472
XM_001126912LOC7280472
XM_001126904LOC7280472
XM_001127034LOC7280802
XM_001127051LOC7280802
XM_001127002LOC7280802
XM_001127022LOC7280802
NM_004992MECP22
NM_001669ARSD2
NM_005442EOMES2
XM_930496LOC6457522
XM_933066LOC6436962
XM_929030LOC1615272
XM_925864LOC6423252
NM_181077GOLGA8A2
XM_370876LOC6536432
NM_018652GOLGA2
XM_496076LOC6536412
NM_001038640GOLGA62
NM_198181LOC4402952
XM_001130526LOC7286362
XM_001130555LOC7286362
XM_001130543LOC7286362
XM_001130536LOC7286362
XM_001129399LOC6423462
XM_928707LOC6423462
XM_925879LOC6423462
NM_005336HDLBP2
NM_203346HDLBP2
NM_001766CD1D2
NM_0146922
NM_139279MCFD22
NM_014181HSPC1592
NM_018976SLC38A22
NM_006166NFYB2
NM_183240TMEM372
NM_021962ABR2
NM_001092ABR2
NM_019008SMCR7L2
NM_001627ALCAM2
NM_001010924C10orf382
NM_000512GALNS2
NM_030806C1orf212
NM_003603SORBS22
NM_021069SORBS22
NM_017413APLN2
NM_018315FBXW72
NM_033632FBXW72
NM_001013415FBXW72
NM_000912OPRK12
NM_006224PITPNA2
NM_001040285PAPD52
NM_001040284PAPD52
NM_001039770FLJ450322
NM_001037164ARL4A2
NM_005738ARL4A2
NM_212460ARL4A2
NM_0010986242
NM_033290MID12
NM_000381MID12
NM_030664PTER2
NM_001001484PTER2
NM_024730FLJ226552
NM_001011705LECT11
NM_007015LECT11
NM_001080950MYO1C1
NM_033375MYO1C1
NM_001080779MYO1C1
NM_016023OTUD6B1
NM_024813C1orf821
NM_019903ADD31
NM_016824ADD31
NM_001121ADD31
NM_000683ADRA2C1
NM_001042399CCDC411
NM_016122CCDC411
NM_024090ELOVL61
NM_018379FAM63A1
NM_152309PIK3AP11
NM_001452FOXF21
NM_0010853571
NM_181780BTLA1
NM_003921BCL101
NM_012081ELL21
NM_014299BRD41
NM_017778WHSC1L11
NM_203459CAMSAP1L11
NM_005253FOSL21
NM_017848FAM120C1
NM_003794SNX41
NM_001002926TWISTNB1
NM_0011055291
NM_006095ATP8A11
NM_018482DDEF11
NM_001035518CEP2501
NM_007186CEP2501
NM_015149RGL11
NM_005497GJA71
NM_001080383GJA71
NM_001017916CYB5611
NM_001915CYB5611
NM_001017917CYB5611
NM_005187CBFA2T31
NM_175931CBFA2T31
NM_014580SLC2A81
XM_001129527KLF111
NM_003597KLF111
NM_024881SLC35E11
NM_0011050781
NM_005241EVI11
NM_0011050771
NM_021215C20orf771
NM_015116LRCH11
NM_024624SMC61
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_016131RAB101
NM_018299UBE2W1
NM_001001481UBE2W1
NM_006654FRS21
NM_001042555FRS21
NM_0151881
NM_000744CHRNA41
NM_001076786QSER11
NM_145913SLC5A81
NM_176816CCDC1251
NM_133464ZNF4831
NM_015236LPHN31
NM_198686RAB151
NM_206933USH2A1
NM_080591PTGS11
NM_000962PTGS11
NM_020828ZFP281
XM_930750LOC6423661
XM_943652LOC6423661
NM_015064ERC11
NM_178038ERC11
NM_178037ERC11
NM_024607PPP1R3B1
NM_017856GEMIN81
NM_001042479GEMIN81
NM_001042480GEMIN81
NM_005868BET11
NM_001077199SFRS121
NM_139168SFRS121
NM_133264WIPF21
NM_181714C6orf1521
NM_000843GRM61
NM_006294UQCRB1
NM_0011003981
NM_015085GARNL41
NM_212471PRKAR1A1
NM_212472PRKAR1A1
NM_002734PRKAR1A1
NM_004434EML11
NM_001008707EML11
NM_024408NOTCH21
XM_001133349NOTCH21
NM_012250RRAS21
NM_0011026691
NM_015931C3orf321
NM_152450FAM81A1
NM_001042573FLJ218651
NM_153235TXLNB1
NM_000405GM2A1
NM_013372GREM11
NM_004845PCYT1B1
NM_021194SLC30A11
NM_002940ABCE11
NM_001040876ABCE11
NM_015226KIAA03501
NM_138810TAGAP1
NM_003417ZNF2641
NM_020148SPIRE11
NM_020746VISA1
NM_015713RRM2B1
NM_005158ABL21
NM_007314ABL21
NM_0011001081
NM_007027TOPBP11
NM_002056GFPT11
NM_001003760KLHL311
XM_943522LOC4410051
XM_498961LOC4410051
NM_001040665STEAP21
NM_152999STEAP21
NM_001039580MAP91
NM_015545PTCD11
NM_0011102201
NM_0011102211
NM_006783GJB61
NM_0011102191
NM_031287SF3B51
NM_0010992251
NM_144609CCDC431
NM_130468CHST141
NM_012125CHRM51
NM_007332TRPA11
NM_017662TRPM61
NM_019116UBFD11
XM_943478LOC3385881
XM_378207LOC3385881
NM_014773KIAA01411
NM_152376UBXD31
NM_012300FBXW111
NM_033644FBXW111
NM_033645FBXW111
NM_031473IFT811
NM_178120DLX11
NM_001038493DLX11
NM_016621PHF21A1
NM_0011018021
NM_005095ZMYM41
NM_001039396MPEG11
NM_012164FBXW21
NM_183419RNF191
NM_015435RNF191
NM_001556IKBKB1
NM_0010988011
NM_152352C18orf191
XM_065166KIAA19571
XM_939576KIAA19571
NM_002652PIP1
NM_030583MATN21
NM_002380MATN21
NM_024653PRKRIP11
NM_032342C9orf1251
NM_001040710FLJ308511
XM_001127419FLJ308511
XM_001130207FLJ308511
XM_942958LOC6422361
XM_943005LOC6422361
NM_130391PTPRD1
NM_130393PTPRD1
NM_130392PTPRD1
NM_002839PTPRD1
NM_001040712PTPRD1
NM_080652TMEM41A1
NM_004928C21orf21
NM_018036C14orf1031
NM_032918RERG1
NM_018398CACNA2D31
NM_014744TBC1D51
NM_000567CRP1
NM_032421CLIP21
NM_003388CLIP21
NM_001005463EBF31
NM_182832PLAC41
NM_147129ALS2CL1
NM_182775ALS2CL1
NM_001001436LOC3882721
NM_004572PKP21
NM_001005242PKP21
NM_152511DUSP181
NM_005334HCFC11
NM_207428C11orf551
NM_001018057DKK31
NM_013253DKK31
NM_015881DKK31
NM_182503DEADC11
NM_001748CAPN21
NM_0011004271
NM_021159RAP1GDS11
NM_0011004281
NM_0011004291
NM_0011004261
NM_0011004301
NM_014506TOR1B1
NM_015691WWC31
NM_003115UAP11
NM_182499TDRD101
NM_0010984751
NM_024617ZCCHC61
NM_006547IGF2BP31
NM_001001715FARP11
NM_001742CALCR1
NM_024295DERL11
NM_007237SP1401
NM_032169ACAD111
NM_004707ATG121
NM_001009922RCHY11
NM_001008925RCHY11
NM_015436RCHY11
NM_003204NFE2L11
NM_001025073C3orf171
NM_015412C3orf171
NM_001025072C3orf171
NM_002241KCNJ101
NM_004136IREB21
NM_000550TYRP11
NM_003889NR1I21
NM_022002NR1I21
NM_033013NR1I21
NM_144607CYB5D11
NM_025147COQ10B1
NM_001002295GATA31
NM_002051GATA31
NM_053042KIAA17291
NM_052869TTYH21
NM_032646TTYH21
NM_001010898SLC6A171
NM_003339UBE2D21
NM_181838UBE2D21
NM_153810C10orf461
NM_003462DNALI11
NM_021132PPP3CB1
XM_930062LOC6538081
NM_006548IGF2BP21
NM_001007225IGF2BP21
NM_000390CHM1
NM_015259ICOSLG1
NM_002558P2RX11
NM_000376VDR1
NM_001017535VDR1
NM_014758SNX191
XM_001130340KRTAP4-81
XM_927495KRTAP4-81
NM_033059KRTAP4-141
XM_926590LOC6532401
NM_001001874TPD52L31
NM_171825CAMK2A1
NM_015981CAMK2A1
NM_0010992691
NM_001083913C10orf261
NM_017787C10orf261
NM_025219DNAJC51
NM_020772NUFIP21
NM_001002762DNAJB121
NM_024949WWC21
NM_005819STX61
NM_001001995GPM6B1
NM_194247HNRPA31
NM_000875IGF1R1
NM_001387DPYSL31
NM_031959KRTAP3-21
NM_006943SOX121
NM_017825ADPRHL21
NM_014023WDR371
NM_015144ZCCHC141
NM_198406PAQR61
NM_024897PAQR61
NM_199168CXCL121
XM_942780SYNPO21
NM_015488PNKD1
NM_022572PNKD1
NM_139246C9orf971
NM_003637ITGA101
NM_022737LPPR21
NM_020760HECW21
NM_032825ZNF3821
NM_0010853841
NM_001017961FAM78B1
NM_006045ATP9A1
NM_181443BTBD31
NM_014962BTBD31
NM_138375CABLES11
NM_000727CACNG11
NM_017703FBXL121
NM_139178ALKBH31
NM_015463C2orf321
NM_014408TRAPPC31
NM_015485RWDD31
NM_005839SRRM11
NM_198715PTGER31
NM_003722TP73L1
XM_378661C17orf511
XM_944416C17orf511
NM_005329HAS31
NM_014396VPS411
NM_080631VPS411
NM_173511ALS2CR131
XM_946032LOC6448521
XM_934218LOC6448521
NM_177538CYP20A11
NM_019072SGTB1
NM_015266SLC9A81
NM_207295MBNL11
NM_207293MBNL11
NM_207297MBNL11
NM_207296MBNL11
NM_207294MBNL11
NM_021038MBNL11
NM_207292MBNL11
NM_017919STX171
NM_012294RAPGEF51
NM_030773TUBB11
NM_003463PTP4A11
NM_006238PPARD1
NM_020397CAMK1D1
NM_014957DENND31
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_001124ADM1
NM_003063SLN1
XM_945000LOC6454341
XM_932897LOC6454341
NM_015711GLTSCR11
NM_000916OXTR1
NM_024811FLJ125291
NM_022764MTHFSD1
NM_003181T1
NM_005385NKTR1
NM_176792MRPL431
NM_138328RHBDL31
NM_003855IL18R11
NM_004229CRSP21
XM_001126052CRSP21
NM_020771HACE11
NM_199205KIAA19671
NM_021174KIAA19671
NM_007175ERLIN21
NM_197970BOLL1
NM_033030BOLL1
XM_939208LOC6481491
XM_001133680LOC6481491
NM_138292ATM1
NM_000051ATM1
NM_020940KIAA16001
NM_017723C9orf1671
NM_012429SEC14L21
NM_139012MAPK141
NM_139014MAPK141
NM_001315MAPK141
XM_927767LOC6535051
XM_928338LOC6535981
XM_927706LOC6445911
NM_016041DERL21
NM_019605SERTAD41
NM_025164KIAA09991
NM_016289CAB391
NM_172359CD461
NM_172356CD461
NM_172361CD461
NM_172351CD461
NM_172350CD461
NM_172355CD461
NM_172352CD461
NM_172353CD461
NM_172357CD461
NM_172358CD461
NM_172354CD461
NM_153826CD461
NM_172360CD461
NM_002389CD461
NM_001042383CEP631
NM_001042400CEP631
NM_025180CEP631
NM_173545C2orf131
NM_000217KCNA11
NM_004331BNIP3L1
NM_002069GNAI11
NM_152515CKAP2L1
NM_001004330FLJ466881
NM_148174AZIN11
NM_015878AZIN11
NM_002977SCN9A1
NM_020336KIAA12191
NM_032373PCGF51
NM_005746PBEF11
NM_152688KHDRBS21
XM_941142FTO1
NM_001080432FTO1
NM_014089NUPL11
NM_001008564NUPL11
NM_0010937721
NM_000222KIT1
NM_000314PTEN1
NM_025057C14orf451
NM_020199C5orf151
NM_001361DHODH1
NM_002030FPRL21
NM_052917GALNT131
NM_015147CEP681
NM_002074GNB11
NM_002834PTPN111
NM_153704TMEM671
NM_001395DUSP91
XM_001132127LOC7310611
XM_001130048LOC7283501
NM_003908EIF2S21
NM_174914UGT3A21
NM_014798PLEKHM11
XM_001128220PLEKHM11
XM_001133151LOC7291991
XM_001133879LOC7319181
NM_032943SYTL21
NM_206929SYTL21
NM_206930SYTL21
NM_206927SYTL21
NM_032379SYTL21
NM_206928SYTL21
XM_001132009LOC6468711
XM_929830LOC6468711
NM_019119PCDHB91
NM_148676DSCR101
NM_003045SLC7A11
NM_006496GNAI31
NM_001010866RP13-15M17.21
XM_001125679LOC7277561
NM_005434MALL1
NM_145044ZNF5011
NM_006203PDE4D1
NM_0011046311
NM_004530MMP21
NM_199054MKNK21
NM_173576MKX1
NM_013975LIG31
NM_214711LOC4011371
NM_005318H1F01
NM_031463HSDL11
NM_203454APOBEC41
NM_144707PROM21
NM_014231VAMP11
NM_016830VAMP11
NM_199245VAMP11
NM_001042682RERE1
NM_012102RERE1
NM_001042681RERE1
NM_004599SREBF21
NM_014924KIAA08311
NM_000578SLC11A11
NM_175921LOC2856361
NM_000922PDE3B1
NM_001039877STRN41
NM_013403STRN41
NM_018159NUDT111
NM_033225CSMD11
NM_002052GATA41
NM_021629GNB41
NM_001005473PLCXD31
NM_002755MAP2K11
NM_005646TARBP11
NM_015101GLT25D21
NM_005226EDG31
NM_000555DCX1
NM_178152DCX1
NM_178153DCX1
NM_178151DCX1
NM_024596MCPH11
NM_005910MAPT1
NM_016841MAPT1
NM_016834MAPT1
NM_016835MAPT1
NM_001042492NF11
NM_000267NF11
NM_020748INTS21
NM_183242BTBD81
NM_004337OSGIN21
NM_012123MTO11
NM_133645MTO11
NM_024913FLJ219861
NM_177967UBAC21
NM_003932ST131
NM_003338UBE2D11
NM_139057ADAMTS171
NM_145259ACVR1C1
NM_0011110311
NM_0011110331
NM_0011110321
NM_001011537FYTTD11
NM_032288FYTTD11
NM_144571CNOT6L1
NM_004827ABCG21
NM_001033578SGK31
NM_013257SGK31
NM_170709SGK31
NM_001001931MTUS11
NM_001001924MTUS11
NM_020749MTUS11
NM_001001925MTUS11
NM_172128CAMK2D1
NM_172127CAMK2D1
NM_139132NUP981
NM_016320NUP981
NM_005333HCCS1
NM_001386DPYSL21
NM_173547TRIM651
NM_198531ATP9B1
NM_033656BRWD11
NM_024689CXorf361
NM_173495PTCHD11
NM_020297ABCC91
NM_014755SERTAD21
NM_004655AXIN21
NM_015097CLASP21
NM_001042599ERBB41
NM_005235ERBB41
NM_013269CLEC2D1
NM_001004419CLEC2D1
NM_198995C18orf341
NM_0011055281
XM_001134414C1orf1331
XM_001134416C1orf1331
NM_030626LRRC271
NM_015112MAST21
NM_145048C4orf281
NM_021949ATP2B31
NM_001001344ATP2B31
NM_005378MYCN1
NM_001039802CDC421
NM_001791CDC421
NM_0010895951
NM_181458PAX31
NM_181460PAX31
NM_181457PAX31
NM_181459PAX31
NM_017902HIF1AN1
NM_000393COL5A21
NM_080671KCNE41
NM_005366MAGEA111
NM_001011544MAGEA111
NM_152787MAP3K7IP31
NM_032860LTV11
NM_018303EXOC21
NM_006407ARL6IP51
NM_015271TRIM21
NM_173167UNC45B1
NM_001033576UNC45B1
NM_016262TUBE11
NM_003579RAD54L1
NM_173514FLJ907091
NM_006210PEG31
NM_000533PLP11
NM_199478PLP11
NM_018416FOXJ21
NM_006064RRAGB1
NM_016656RRAGB1
NM_017523XAF11
NM_199139XAF11
NM_032441ZMAT11
NM_001011657ZMAT11
NM_0010987211
NM_0010987221
NM_004485GNG41
NM_014844KIAA03291
NM_004062CDH161
NM_007047BTN3A21
NM_013348KCNJ141
NM_170720KCNJ141
NM_002628PFN21
NM_053024PFN21
NM_002015FOXO1A1
NM_201280MUTED1
NM_182557BCL9L1
NM_022826MARCH71
NM_206909PSD31
NM_015310PSD31
NM_018407LAPTM4B1
NM_006180NTRK21
NM_001018064NTRK21
NM_024736GSDMDC11
NM_052840BRUNOL61
NM_015264C22orf91
NM_001009880C22orf91
NM_181505PPP1R1B1
NM_032192PPP1R1B1
NM_006489NOVA11
NM_002515NOVA11
NM_002560P2RX41
NM_019044CCDC931
NM_198076FAM36A1
NM_022480KLHL251
NM_030809FAM130A11
NM_006025P111
NM_002336LRP61
NM_0207091
NM_024763WDR781
NM_020935USP371
NM_001076780PKD1L21
NM_007137ZNF811
NM_001003684UCRC1
NM_013387UCRC1
NM_005342HMGB31
NM_003673TCAP1
NM_152622MIER31
NM_207442FLJ397791
NM_206819MYBPC11
NM_206820MYBPC11
NM_002465MYBPC11
NM_206821MYBPC11
NM_003901SGPL11
XM_946142SHANK31
NM_001080420SHANK31
NM_024638QTRTD11
NM_152780MAP7D21
NM_001018111PODXL1
NM_005397PODXL1
NM_003946NOL31
NM_145307PLEKHK11
NM_014080DUOX21
NM_052924RHPN11
NM_004943DMWD1
NM_001029859KCTD211
NM_004906WTAP1
NM_000860HPGD1
NM_133493CD1091
NM_152942TNFRSF81
NM_001243TNFRSF81
NM_153256C10orf471
NM_002095GTF2E21
NM_153045C9orf911
NM_001031849MASP11
NM_0153511
NM_001003809DLGAP11
NM_004746DLGAP11
NM_006108SPON11
NM_182508C13orf301
NM_002859PXN1
NM_015316PPP1R13B1
NM_0010994131
NM_0010994121
NM_006766MYST31
NM_002146HOXB31
NM_030755TXNDC11
NM_019054FAM35A1
NM_001845COL4A11
NM_002536TBC1D251
NM_201263WARS21
NM_005065SEL1L1
NM_145244DDIT4L1
NM_004941DHX81
NM_015508TIPARP1
NM_012137DDAH11
NM_177549PRNT1
NM_080862SPSB41
NM_005877SF3A11
NM_001005409SF3A11
NM_000681ADRA2A1
NM_000240MAOA1
NM_020705TBC1D241
NM_000785CYP27B11
NM_007054KIF3A1
NM_000053ATP7B1
NM_001005918ATP7B1
NM_021116ADCY11
NM_138300PYGO21
NM_015107PHF81
NM_022845CBFB1
NM_001755CBFB1
NM_173815FLJ374641
NM_004420DUSP81
NM_003215TEC1
NM_001004125TUSC11
NM_020731AHRR1
NM_001712CEACAM11
NM_001024912CEACAM11
NM_003717NPFF1
NM_012186FOXE31
XM_001132770FOXE31
NM_152424FAM123B1
XM_932309LOC6446941
NM_152722HEPACAM1
NM_0153721
NM_001076682NCAM11
NM_006148LASP11
NM_030579CYB5B1
NM_032044REG41
NM_001520GTF3C11
XM_001130790KIAA18811
NM_001080400KIAA18811
NM_021103TMSB101
NM_000093COL5A11
NM_019060CRCT11
XM_170840LOC2562231
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_002609PDGFRB1
NM_001029885MGC103341
NM_005495SLC17A41
XM_001126853MAML11
XM_942191LOC6446861
NM_030772GJA101
NM_014246CELSR11
NM_133463AMZ11
NM_080836STK351
NM_0010985361
NM_003481USP51
NM_000587C71
NM_152529GPR1551
NM_001033045GPR1551
NM_001039395C9orf681
NM_000675ADORA2A1
NM_207379TMEM1791
NM_002128HMGB11
NM_001005911IHPK21
NM_001005910IHPK21
NM_017660GATAD2A1
NM_001003665C1orf951
XM_939547ZNF6971
NM_001080470ZNF6971
NM_015995KLF131
NM_001033026C19orf61
NM_033420C19orf61
NM_020851ISLR21
NM_145039MGC163851
NM_020713ZNF512B1
NM_139235NOL61
NM_022917NOL61
NM_001040214TCBA11
NM_052861MGC216751
NM_003576STK241
NM_001032296STK241
NM_015282CLASP11
NM_199452ZNF3651
NM_199451ZNF3651
NM_001002909GPATCH81
NM_014388C1orf1071
NM_198269HIPK11
NM_181358HIPK11
NM_198268HIPK11
XM_927654LOC6445251
XM_926123LOC6426691
NM_139280ORMDL31
NM_014553TFCP2L11
NM_003482MLL21
NM_001010895LOC3757481
NM_012214MGAT4A1
NM_005967NAB21
NM_001079803GAA1
NM_001079804GAA1
NM_000152GAA1
NM_014311SMUG11
NM_014289CAPN61
NM_006077CBARA11
NM_172241CTAGE11
NM_001417EIF4B1
NM_006577B3GNT21
NM_145230ATP6V0E21
NM_139321ATRN1
NM_006534NCOA31
NM_181659NCOA31
NM_022341PDF1
NM_032382COG81
NM_207429FLJ458031
NM_152563FAM86C1
NM_018172FAM86C1
NM_0010996531
XM_001129932LOC6453321
NM_015079TBC1D2B1
NM_012399PITPNB1
NM_001001971FAM13C11
NM_198215FAM13C11
NM_181843NUDT81
NM_002062GLP1R1
NM_005109OXSR11
NM_014515CNOT21
XM_001129857PDDC11
NM_182612PDDC11
NM_006420ARFGEF21
NM_019074DLL41
NM_0011045901
NM_0011045891
NM_0011045871
NM_152270SLFN111
NM_0011045881
NM_007131ZNF751
NM_031417MARK41
NM_133261GIPC31
NM_001012515FECH1
NM_000140FECH1
NM_001030288SPN1
NM_003123SPN1
NM_032199ARID5B1
NM_001063TF1
NM_153367C10orf561
NM_052886MAL21
NM_012318LETM11
NM_005028PIP5K2A1
NM_021815SLC5A71
NM_0011056591
NM_144732HNRPUL11
NM_007040HNRPUL11
NM_175861TMTC11
NM_024639ZNF322A1
NM_001042444CAST1
NM_001042440CAST1
NM_001042446CAST1
NM_001042441CAST1
NM_001750CAST1
NM_173063CAST1
NM_001042443CAST1
NM_001042442CAST1
NM_173060CAST1
NM_173061CAST1
NM_001042445CAST1
NM_015311OBSL11
NM_030648SETD71
NM_014839LPPR41
NM_175080P2RX51
NM_002561P2RX51
NM_001007534C3orf561
NM_000629IFNAR11
NM_004575POU4F21
NM_015393DKFZP564O08231
NM_004651USP111
NM_015904EIF5B1
NM_020447C15orf171
NM_022773TMEM1121
NM_173829P18SRP1
NM_152406AFAP1L11
NM_018660ZNF3951
NM_0010992791
NM_199244FOXD4L41
NM_016831PER31
XM_930505LOC6456761
XM_941520LOC6456761
NM_001009569MLLT101
NM_004641MLLT101
NM_015070ZC3H131
NM_173544FAM129C1
NM_207119LRRC201
NM_018239LRRC201
NM_018205LRRC201
NM_017761PNRC21
NM_024046CAMKV1
NM_030929KAZALD11
NM_182853CREM1
NM_182722CREM1
NM_182717CREM1
NM_182721CREM1
NM_183012CREM1
NM_183011CREM1
NM_182723CREM1
NM_182720CREM1
NM_183013CREM1
NM_005207CRKL1
NM_003014SFRP41
NM_017563IL17RD1
NM_001080973IL17RD1
NM_022361POPDC31
NM_014866KIAA03101
NM_002799PSMB71
NM_025224ZBTB461
NM_004273CHST31
NM_173698RP1-32F7.21
NM_201628FLJ438061
NM_015520MAGI11
NM_001033057MAGI11
NM_138348FAM105B1
NM_152375KLHDC7A1
NM_001978EPB491
NM_004801NRXN11
NM_138735NRXN11
NM_014974DIP2C1
NM_020429SMURF11
NM_181349SMURF11
NM_019892INPP5E1
NM_004455EXTL11
NM_002994CXCL51
NM_058164OLFM21
NM_0011127411
NM_004994MMP91
NM_145861EDARADD1
NM_080738EDARADD1
NM_0209101
NM_014953DIS31
XM_940089FLJ396391
XM_370932FLJ396391
NM_015005KIAA02841
NM_0011127261
NM_024676C1orf1131
NM_018836AJAP11
NM_000734CD2471
NM_198053CD2471
NM_014417BBC31
NM_021216ZNF711
NM_0150211
NM_018981DNAJC101
NM_006918SC5DL1
NM_001024956SC5DL1
NM_002518NPAS21
NM_079423MYL61
NM_021019MYL61
NM_032843FIBCD11
NM_006825CKAP41
NM_052968APOA51
NM_020909EPB41L51
NM_020132AGPAT31
NM_001037553AGPAT31
NM_153688ZFP11
NM_001421ELF41
NM_052885SLC2A131
NM_153341IBRDC31
NM_138415PHF21B1
NM_015254KIF13B1
NM_015042ZNF6091
NM_002950RPN11
NM_013233STK391
NM_003620PPM1D1
NM_194314ZBTB411
NM_001918DBT1
NM_0151771
NM_004394DAP1
NM_0011132391
NM_022740HIPK21
NM_0190041
NM_013438UBQLN11
NM_0146951
NM_001014286FAM48A1
NM_017569FAM48A1
NM_001013629LOC3408431
NM_0010988441
NM_003480MFAP51
NM_006980MTERF1
NM_001030055ARHGAP51
NM_001173ARHGAP51
NM_014701KIAA02561
NM_152744SDK11
NM_005123NR1H41
NM_000663ABAT1
NM_020686ABAT1
NM_173523MAGEB61
NM_012287CENTB21
NM_005406ROCK11
XM_001125808LOC7277581
NM_000486AQP21
NM_016412IGF2AS1
NM_024516C16orf531
NM_133482RAD501
NM_005732RAD501
NM_016206VGLL31
NM_014710GPRASP11
NM_0010994101
NM_0010994111
NM_001004302ZNF7831
NM_001083591CUGBP21
NM_006561CUGBP21
NM_001025076CUGBP21
NM_033446FAM125B1
NM_033210ZNF5021
NM_006415SPTLC11
NM_024496C14orf41
NM_024989PGAP11
NM_001007237IGSF31
NM_001542IGSF31
XM_001127146IL7R1
NM_007347AP4E11
NM_014772KIAA04271
NM_001002800SMC41
NM_005496SMC41
NM_014330PPP1R15A1
NM_032826SLC35B41
NM_004525LRP21
NM_015397WDR40A1
NM_178499CCDC601
NM_006195PBX31
NM_021130PPIA1
NM_020638FGF231
NM_016097IER3IP11
NM_017850C1orf1091
NM_014614PSME41
NM_004262TMPRSS11D1
NM_205855UNQ19401
XM_936878DKFZP781G01191
XM_927284DKFZP781G01191
NM_003713PPAP2B1
NM_177414PPAP2B1
NM_033020TRIM331
NM_015906TRIM331
XM_946240FBXO461
XM_946239FBXO461
XM_934743FBXO461
NM_001080469FBXO461
NM_213566DFFA1
NM_014841SNAP911
NM_031892SH3KBP11
NM_001024666SH3KBP11
NM_030762BHLHB31
XM_495918FLJ132241
XM_938169FLJ132241
NM_181501ITGA11
NM_017847C1orf271
NM_007219RNF241
NM_014674EDEM11
NM_018086FIGN1
NM_001008408RBM331
NM_053043PRR81
NM_001024843TNRC6B1
NM_015088TNRC6B1
NM_019106SEPT31
NM_183416KIF1B1
NM_032785AGBL41
NM_198081SCML41
NM_024515WDR251
NM_001083617RB1CC11
NM_014781RB1CC11
NM_000442PECAM11
NM_173454PDE8A1
NM_002605PDE8A1
NM_005562LAMC21
NM_024841FLJ142131
XM_936831IQSEC31
NM_0011098781
NM_016954TBX221
NM_0011098791
NM_012234RYBP1
NM_000451SHOX1
NM_147189FAM110B1
NM_001802CDR21
NM_005335HCLS11
NM_015447CAMSAP11
NM_015328KIAA08281
NM_015020PHLPPL1
NM_172220CSF31
NM_004642CDK2AP11
NM_003305TRPC31
NM_002716PPP2R1B1
NM_054035UNC1191
NM_005148UNC1191
NM_001045477FAM22G1
NM_006228PNOC1
NM_0010096101
NM_022567NYX1
XM_001126125PGAM51
NM_203463LASS61
NM_000759CSF31
NM_172219CSF31
NM_152637METTL7B1
NM_178191ATPIF11
XM_927228KRTAP7-11
XM_941037KRTAP7-11
NM_001033551TOM1L21
NM_001082968TOM1L21
NM_032108SEMA6B1
NM_173814PRTG1
NM_018711SVOP1
NM_183075CYP2U11
NM_003979GPRC5A1
NM_153018ZFP31
NM_175630DNMT3A1
XM_926382LOC6427551
NM_014015DEXI1
NM_014232VAMP21
NM_052870SNAG11
NM_0011016761
XM_937862LOC6449621
XM_498841LOC4407481
NM_145175FAM84A1
NM_000120EPHX11
NM_178013PRIMA11
NM_015565ZNF2941
NM_017645FAM29A1
NM_178136POLDIP31
NM_032311POLDIP31
XM_001130507LOC7317081
XM_001127823LOC7285731
NM_1449931
NM_005430WNT11
NM_017691LRRC491
NM_0142471
NM_007365PADI21
NM_173527REM21
NM_145735ARHGEF71
XM_928252LOC6452121
XM_939117LOC6452121
NM_014435ASAHL1
NM_015341NCAPH1
NM_003074SMARCC11
NM_002928RGS161
NM_024958NRSN21
NM_007271STK381
NM_013989DIO21
NM_001007023DIO21
NM_000793DIO21
NM_001080421UNC13A1
NM_001047605KIR3DX11
NM_004556NFKBIE1
NM_001649SHROOM21
NM_173551ANKS61
NM_001902CTH1
NM_153742CTH1
NM_130847AMOTL11
NM_017811UBE2R21
NM_007232HRH31
NM_004132HABP21
NM_005990STK101
NM_030911CDADC11
NM_018017C10orf1181
NM_016620ZNF6441
NM_201269ZNF6441
NM_032186ZNF6441
NM_020163SEMA3G1
NM_144578C14orf321
NM_004285H6PD1
XM_936833LOC6441961
XM_927389LOC6441961
NM_001618PARP11
NM_023929ZBTB101
NM_0011055391
NM_152837SNX161
NM_152836SNX161
NM_022133SNX161
NM_025187C16orf701
NM_006282STK41
NM_145698ACBD51
NM_001042473ACBD51
NM_182901C11orf171
NM_020642C11orf171
NM_144973MGC240391
NM_182663RASSF51
NM_182664RASSF51
NM_182665RASSF51
NM_001040701FUT61
NM_000150FUT61
NM_002737PRKCA1
NM_001042751STAG21
NM_001042750STAG21
NM_001042749STAG21
NM_006603STAG21
NM_020919ALS21
XM_001126149LOC7279161
XM_001126026LOC7304781
NM_178815ARL5B1
NM_0011024021
NM_021213PCTP1
NM_138287DTX3L1
NM_020817KIAA14071
NM_024959SLC24A61
NM_014667VGLL41
NM_144994ANKRD231
NM_001029839C3orf231
NM_001029840C3orf231
NM_003118SPARC1
NM_002507NGFR1
NM_005750C4orf61
NM_020784KIAA13441
NM_017877C2orf181
XM_001129051LOC7307301
XM_001129085LOC7307301
XM_001129078LOC7307301
NM_001284AP3S11
XM_942952FLJ462841
XM_499123FLJ462841
NM_178844NLRC31
NM_007375TARDBP1
NM_018325C9orf721
NM_001040445ASB11
NM_002618PEX131
NM_001032282KLF101
NM_005655KLF101
NM_005722ACTR21
NM_001005386ACTR21
NM_001214C16orf31
NM_0333901
XM_379194LOC4010681
NM_004549NDUFC21
NM_001037339PDE4B1
NM_002600PDE4B1
NM_001037340PDE4B1
NM_001037341PDE4B1
NM_019845RPRM1
NM_1736011
NM_0010996501
NM_153021PLB11
NM_014906PPM1E1
NM_016598ZDHHC31
NM_024554PGBD51
NM_018957SH3BP11
NM_001039840CHIC11
NM_001009552PPP2CB1
NM_004156PPP2CB1
NM_006379SEMA3C1
NM_0010986381
NM_152453TMCO51
NM_015110SMC51
NM_032818C9orf1001
NM_017415KLHL31
NM_144778MBNL21
NM_207304MBNL21
NM_001871CPB11
NM_152624DCP21
NM_001044370MPPED11
NM_022763FNDC3B1
NM_0251531
XM_001130691LOC7295781
XM_001127109LOC7307611
NM_014663JMJD2A1
NM_004286GTPBP11
NM_007275TUSC21
NM_014730KIAA01521
NM_014520MYBBP1A1
NM_001497B4GALT11
NM_003593FOXN11
NM_003810TNFSF101
NM_006321ARIH21
NM_032454STK191
NM_004197STK191
NM_032117MND11
NM_032731TXNL51
NM_022171TCTA1
NM_153712TTL1
NM_031445AMMECR1L1
NM_025010KLHL181
NM_004487GOLGB11
NM_024561NARG1L1
NM_173468MOBKL1A1
NM_003108SOX111
NM_000368TSC11
NM_173065IL28RA1
NM_173064IL28RA1
NM_170743IL28RA1
NM_182686KIAA0319L1
NM_015111N4BP31
NM_004287GOSR21
XM_001133630LOC6506521
XM_001133005LOC6448601
NM_181847AMIGO21
NM_018602DNAJA41
NM_003012SFRP11
NM_006726LRBA1
NM_012062DNM1L1
NM_001329CTBP21
NM_0010839141
NM_022802CTBP21
NM_019884GSK3A1
NM_015941ATP6V1H1
NM_213620ATP6V1H1
NM_213619ATP6V1H1
NM_013279C11orf91
NM_002064GLRX1
NM_014802KIAA05281
NM_000876IGF2R1
NM_001010867C1orf691
NM_012224NEK11
NM_033326SOX61
NM_017508SOX61
NM_0010087811
XM_936538FAT31
XM_926199FAT31
NM_001547IFIT21
NM_199073C3orf601
NM_199070C3orf601
NM_199417C3orf601
NM_199074C3orf601
NM_199069C3orf601
XM_001131537LOC7319941
XM_001130930LOC7296571
NM_017658KLHL281
NM_152233SNX61
NM_021249SNX61
NM_003766BECN11
NM_017925DENND4C1
NM_130809PRRC11
NM_144582TEX2611
NM_024569MPZL11
NM_003953MPZL11
XM_001130409LOC7294881
NM_003385VSNL11
NM_001040432ZCWPW21
NM_001029864KIAA17551
NM_033285TP53INP11
XM_049078KIAA12391
XM_940885KIAA12391
NM_016089ZNF5891
NM_0155621
NM_012098ANGPTL21
NM_001080510LOC1245121
XM_940962LOC1245121
NM_001037293PALM21
NM_053016PALM21
NM_024329EFHD21
NM_017693BIVM1
NM_020871LRCH21
NM_002076GNS1
NM_001007253ERV31
NM_145167PIGM1
NM_199427ZFP641
NM_019022TXNDC101
NM_004831CRSP71
NM_030641APOL61
NM_207012AP3M11
NM_012095AP3M11
NM_139169TRUB11
NM_005465AKT31
NM_006938SNRPD11
NM_004776B4GALT51
NM_001032293ZNF2071
NM_003457ZNF2071
NM_0010985071
NM_004171SLC1A21
NM_016018PHF20L11
NM_145018FLJ254161
NM_020769RGAG11
NM_020340KIAA12441
NM_006930SKP1A1
NM_170679SKP1A1
NM_012253TKTL11
NM_032136TKTL21
NM_003703NOL141
NM_173807C1orf1011
NM_006754SYPL11
NM_182715SYPL11
NM_003474ADAM121
NM_016169SUFU1
NM_014922NLRP11
NM_033006NLRP11
NM_033007NLRP11
NM_033004NLRP11
NM_015092SMG11
NM_033514LIMS31
NM_198141GANC1
XM_001132516LOC7290491
NM_032817ITIH51
NM_030569ITIH51
NM_006187OAS31
NM_005840SPRY31
NM_000852GSTP11
NM_024722ACBD41
NM_000575IL1A1
NM_001024680LOC5542511
NM_022484TMEM1681
NM_016070MRPS231
NM_016645NGRN1
NM_001033088NGRN1
NM_024911GPR1771
NM_002547OPHN11
NM_006011ST8SIA21
NM_015557CHD51
NM_007353GNA121
NM_014604TAX1BP31
NM_024779PIP5K2C1
NM_005828WDR681
NM_052820CORO2A1
NM_003389CORO2A1
NM_020766PCDH191
NM_0011052431
NM_0011051931
NM_0011051951
NM_0011051941
NM_152698FLJ383771
NM_018452C6orf351
NM_012259HEY21
NM_014607UBXD21
NM_015239AGTPBP11
NM_006828ASCC31
NM_021633KLHL121
NM_0010985251
NM_018204CKAP21
NM_144606FLCN1
NM_014616ATP11B1
NM_022755IPPK1
NM_207491MGC486281
NM_078474TM2D31
NM_025141TM2D31
NM_020947KIAA16091
NM_020240CDC42SE21
NM_001038702CDC42SE21
NM_018314UEVLD1
XM_379623FLJ412001
XM_943473FLJ412001
NM_144647CAPSL1
NM_001042625CAPSL1
NM_000831GRIK31
NM_024565CCNJL1
NM_173558FGD21
NM_052962IL22RA21
NM_181309IL22RA21
NM_181310IL22RA21
NM_138458LOC1161431
NM_001801CDO11
NM_178427ARNT1
NM_178426ARNT1
NM_001668ARNT1
NM_152678FAM116A1
XM_001132771FAM116A1
NM_018067MAP7D11
NM_017549EPDR11
NM_005010NRCAM1
NM_001037133NRCAM1
NM_001037132NRCAM1
NM_012448STAT5B1
NM_001303COX101
NM_003687PDLIM41
NM_014840NUAK11
NM_016275SELT1
NM_019091PLEKHA31
NM_001010908C1QL31
NM_003679KMO1
NM_152765C8orf461
NM_012316KPNA61
NM_016183MRTO41
NM_173622CDRT41
NM_144577CCDC1141
XM_001134215PDPR1
NM_017990PDPR1
NM_002909REG1A1
NM_152400C4orf321
NM_144570HN1L1
NM_020873LRRN11
NM_012262HS2ST11
NM_014713LAPTM4A1
NM_002177IFNW11
NM_144628TBC1D201
NM_004248PRLHR1
NM_020776KIAA13281
NM_014504RABGEF11
NM_000738CHRM11
NM_001688ATP5F11
NM_194442LBR1
NM_002296LBR1
NM_032151PCBD21
NM_134447C19orf21
NM_003796C19orf21
NM_015497TMEM87A1
NM_001029866LOC1551001
NM_014406CESK11
NM_020752GPR1581
NM_183246PHACTR31
NM_183244PHACTR31
NM_080672PHACTR31
NM_152443RDH121
NM_001004320FLJ162371
NM_198392TCF211
NM_198399ARPP-211
NM_001025069ARPP-211
NM_001025068ARPP-211
NM_022366TFB2M1
NM_002868RAB5B1
NM_001659ARF31
NM_001040159SPOCK31
NM_016950SPOCK31
NM_020844KIAA14561
NM_0010996771
NM_001004317LIN28B1
NM_001018115FANCD21
NM_014918CHSY11
NM_014877HELZ1
NM_022075LASS21
NM_181746LASS21
NM_020921NIN1
NM_152409C5orf241
NM_014498GOLPH41
NM_0011026031
NM_198893ZNF1601
NM_033288ZNF1601
NM_145207SPATA51
NM_032145FBXO301
NM_203407LOC3406021
NM_020768KCTD161
NM_0207331
NM_004932CDH61
NM_021012KCNJ121
NM_013236ATXN101
NM_012430SEC22A1
NM_021813BACH21
NM_022131CLSTN21
NM_015387PREI31
NM_199482PREI31
NM_0011008191
NM_003221TFAP2B1
XM_001128560LOC7311281
NM_015947ASCC11
NM_022817PER21
NM_020463SMEK21
XM_944290KIAA04921
XM_378914KIAA04921
NM_001077484SLC38A11
NM_030674SLC38A11
NM_015288PHF151
NM_0011046471
NM_018155SLC25A361
NM_018121C10orf61
NM_175872ZNF7921
NM_0011031471
NM_0011031481
NM_0011031461
NM_015575TNRC151
NM_016525UBAP11
NM_002063GLRA21
NM_006802SF3A31
NM_022470ZMAT31
NM_152240ZMAT31
NM_198219ING11
NM_198218ING11
NM_005537ING11
NM_198217ING11
NM_015138RTF11
NM_022349MS4A6A1
NM_138357CCDC109A1
NM_0011097541
NM_002837PTPRB1
NM_144633KCNH81
NM_178864NPAS41
NM_016287HP1BP31
NM_198901SRI1
NM_003130SRI1
NM_001006623WDR331
NM_020341PAK71
NM_177990PAK71

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317