Predicted Off-targets for siRNA "aaccuacaccugaagaaccag" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

22 hits were found for CCUACACCUGAAGAACCAG (19 guide strand hits and 3 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_207414 FLJ43860 3600 3618 CCUACACCUGAAGgACCAa75 2 13 c false   <90%   4164
NM_000885 ITGA4 105 123 CCUACACCUGAAaAACaAG66 2 12   false   <90%   6082
NM_023085 CAPN10 817 835 gCUcCACCUGAAGgACCAG41 3 9 c false   <90%   2161
NM_023083 CAPN10 817 835 gCUcCACCUGAAGgACCAG41 3 9 c false   <90%   2626
NM_080414 VPS16 355 373 gCUgCACCUGAAGAACgAG37 3 12 c false   <90%   1301
NM_080413 VPS16 1350 1368 gCUgCACCUGAAGAACgAG37 3 12 c false   <90%   2337
NM_022575 VPS16 1782 1800 gCUgCACCUGAAGAACgAG37 3 12 c false   <90%   2769
NM_002836 PTPRA 107 125 gCUgCACCUGAAGAACgAG37 3 12 c false   <90%   3637
NM_032797 AIFM2 466 484 gaUAgACCUGAAGAACCAG35 3 14 bc false   <90%   3240
NM_178555 FLJ25770 1659 1677 uuUACAgCUGAAGAACCAa15 4 11 bc false   <90%   1931
NM_001042784 FLJ25770 3399 3417 uuUACAgCUGAAGAACCAa15 4 11 bc false   <90%   3626
NM_033438 SLAMF9 673 691 CCUACACCUGcAGAgCCAa9 3 10 c false   <90%   1137
XR_017291 LOC646773 1703 1721 gCUACACgUGAAGAAaCAG9 3 7 c false   <90%   1750
NM_000087 CNGA1 156 174 uCUACAuCUGAAGAAuCAG5 3 8 c false   <90%   2532
NM_031366 COL4A3 4252 4270 ggcACACCUGgAGAACCAG5 4 8 c false   <90%   7420
NM_031365 COL4A3 4252 4270 ggcACACCUGgAGAACCAG5 4 8 c false   <90%   7630
NM_031362 COL4A3 4252 4270 ggcACACCUGgAGAACCAG5 4 8 c false   <90%   7923
NM_000091 COL4A3 4252 4270 ggcACACCUGgAGAACCAG5 4 8 c false   <90%   8096
NM_153697 ANKRD44 1066 1084 uuaACACCUuAAGAACCAG-15 4 9 bc false   <90%   3686


Hits to Sense strand




AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_052900 CSMD3 7379 7397 gauGUUCUUCAGGUGUAuG64 4 14 c false   <90%   12643
NM_198124 CSMD3 7583 7601 gauGUUCUUCAGGUGUAuG64 4 14 c false   <90%   13042
NM_198123 CSMD3 7691 7709 gauGUUCUUCAGGUGUAuG64 4 14 c false   <90%   13150


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 999
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_032189ATP11A4
NM_015205ATP11A4
NM_031309SCRT13
NM_003028SHB3
NM_003221TFAP2B2
XM_925864LOC6423252
XM_001130526LOC7286362
XM_001130555LOC7286362
XM_001130543LOC7286362
XM_001130536LOC7286362
XM_001129399LOC6423462
XM_928707LOC6423462
XM_925879LOC6423462
NM_001031804MAF2
NM_001004439ITGA112
NM_172367TUSC52
NM_014228SLC6A72
NM_021101CLDN12
NM_177999ASB62
NM_017873ASB62
NM_000578SLC11A12
NM_030981RAB1B2
NM_012309SHANK22
NM_002657PLAGL22
NM_001035513SDHC2
NM_001035512SDHC2
NM_003001SDHC2
NM_006614CHL12
NM_003441ZNF1412
NM_017523XAF12
NM_199139XAF12
NM_014911AAK12
NM_002064GLRX2
NM_052861MGC216752
NM_003913PRPF4B2
NM_014810CEP3502
NM_021734SLC25A192
NM_005197CHES12
NM_0010854712
NM_001008539SLC7A22
NM_003046SLC7A22
NM_004102FABP32
NM_153347TMEM86A2
NM_001008494ISX2
NM_004028AQP42
NM_001650AQP42
XM_209227LOC6534642
NM_178828C9orf791
NM_003099SNX11
NM_152826SNX11
NM_148955SNX11
NM_006628ARPP-191
NM_0011013961
NM_053023ZFP911
NM_002737PRKCA1
NM_004079CTSS1
NM_016006ABHD51
XM_378312LOC2831431
XM_943773LOC2831431
NM_017740ZDHHC71
NM_004845PCYT1B1
NM_198150ARSK1
NM_145167PIGM1
NM_032228MLSTD21
NM_004262TMPRSS11D1
NM_004090DUSP31
NM_016107ZFR1
NM_198715PTGER31
NM_199418PRCP1
NM_005040PRCP1
NM_0011004251
NM_015314KIAA08951
NM_001024688NBN1
NM_002485NBN1
NM_002243KCNJ151
NM_170736KCNJ151
NM_170737KCNJ151
XM_001129337LOC7313581
XM_001131925LOC7299711
NM_004863SPTLC21
NM_198968DZIP11
NM_014934DZIP11
NM_014790JAKMIP21
NM_003200TCF31
NM_0010853751
NM_006011ST8SIA21
NM_021954GJA31
NM_001921DCTD1
NM_001012732DCTD1
XM_001133559LOC6446341
NM_002508NID11
XM_929714LOC6467621
XM_935722LOC6467621
XM_938418LOC6467621
NM_004286GTPBP11
NM_032741AGPAT11
NM_006411AGPAT11
NM_006708GLO11
NM_003411ZFY1
NM_000362TIMP31
NM_031244SIRT51
NM_001010853ACY1L21
NM_032432ABLIM21
NM_031366COL4A31
NM_000091COL4A31
NM_031365COL4A31
NM_031362COL4A31
NM_153442GPR261
NM_033150COL2A11
NM_001844COL2A11
XM_937045LOC6479881
NM_018652GOLGA1
XM_496076LOC6536411
NM_001038640GOLGA61
XM_930496LOC6457521
XM_370876LOC6536431
XM_929030LOC1615271
XM_933066LOC6436961
NM_198181LOC4402951
NM_001023567GOLGA8B1
NM_181077GOLGA8A1
NM_001012420GOLGA8G1
XM_926998LOC6436991
XM_001126392LOC7279091
XM_001126407LOC7279091
XM_001126378LOC7279091
XM_001126877LOC7280471
XM_001126928LOC7280471
XM_001126912LOC7280471
XM_001126904LOC7280471
XM_001126349LOC7279091
XM_001127034LOC7280801
XM_001127051LOC7280801
XM_001127002LOC7280801
XM_001127022LOC7280801
XM_928167LOC6451371
NM_001012452FLJ326791
NM_001012423GOLGA8E1
NM_144576COQ10A1
NM_0010993371
XM_926071LOC6425921
NM_0010996921
NM_001970EIF5A1
NM_003916AP1S21
NM_182935MOBP1
NM_007325GRIA31
NM_000828GRIA31
NM_032638GATA21
NM_020119ZC3HAV11
NM_024807TREML21
NM_013238DNAJC151
NM_053279C8orf131
NM_001082534CA101
NM_020178CA101
NM_001082533CA101
NM_001005505CACNA2D21
NM_006030CACNA2D21
XM_001129630CCS1
NM_003881WISP21
NM_199334THRA1
NM_032276RHBDD11
NM_020863ZFAT11
NM_017671C20orf421
NM_005029PITX31
NM_152523CCNYL11
NM_012437SNAPAP1
NM_015564LRRTM21
NM_006687ACTL7A1
NM_153015TMEM741
NM_001018100Gcom11
NM_152451Gcom11
NM_001029939ZFAT11
NM_014752SPCS21
NM_0010843931
NM_006108SPON11
NM_153034ZNF4881
NM_015064ERC11
NM_178039ERC11
NM_178040ERC11
NM_178038ERC11
NM_178037ERC11
NM_001080978LILRB21
NM_005874LILRB21
NM_007274ACOT71
NM_181865ACOT71
NM_181866ACOT71
NM_181864ACOT71
NM_003636KCNAB21
NM_172130KCNAB21
XM_941280LOC6489801
XM_933701LOC6441651
NM_021574BCR1
NM_004327BCR1
XM_001129467LOC7284681
NM_032287LDOC1L1
NM_020431TMEM63C1
NM_000719CACNA1C1
NM_018687LOC559081
NM_147192DMBX11
NM_172225DMBX11
NM_001039770FLJ450321
NM_001002034FAM109B1
NM_000918P4HB1
NM_003403YY11
NM_001610ACP21
NM_144717IL20RB1
NM_001024941TRIM171
NM_001024940TRIM171
NM_016102TRIM171
NM_033020TRIM331
NM_015906TRIM331
NM_144679C17orf561
NM_020375C12orf51
NM_0011024021
NM_021213PCTP1
NM_002430MN11
NM_022461AZI21
NM_005466MED61
NM_006726LRBA1
NM_024531GPR172A1
NM_015686TMEM281
XM_001133935LOC7318351
NM_0011110191
NM_145117NAV21
NM_182964NAV21
NM_0011110181
NM_003125SPRR1B1
XM_001127680SPRR1B1
XM_001134351LOC7301851
NM_0011046471
NM_018155SLC25A361
NM_004938DAPK11
XM_939083TTC281
XM_929318TTC281
NM_024607PPP1R3B1
NM_004274AKAP61
NM_206925CA121
NM_001218CA121
NM_022169ABCG41
XM_371461KIAA16711
NM_000276OCRL1
NM_001587OCRL1
NM_020828ZFP281
NM_153023SPATA131
NM_052907TMEM132B1
NM_018201TBC1D131
NM_001003674C18orf11
NM_181483C18orf11
NM_181481C18orf11
NM_001003675C18orf11
NM_004338C18orf11
NM_181482C18orf11
NM_001201BMP31
NM_016535ZNF5811
NM_144719CCDC131
NM_0204591
NM_022898BCL11B1
NM_138576BCL11B1
NM_021924MUPCDH1
NM_031264MUPCDH1
NM_001001662ZNF7821
NM_001079691CG0181
NM_0153511
NM_01444476P1
NM_207378SERPINA131
NM_016059PPIL11
NM_138460CMTM51
NM_001037288CMTM51
NM_032853MUM11
NM_018355ZNF4151
NM_014877HELZ1
NM_014880CD3021
XM_936831IQSEC31
NM_015321CRTC11
NM_0010984821
NM_001042576RRBP11
NM_004587RRBP11
NM_001080410FBXO411
XM_001133261FBXO411
NM_201544LGALS81
NM_006499LGALS81
NM_201545LGALS81
NM_201543LGALS81
NM_014696GPRIN21
NM_130463ATP6V1G21
NM_138282ATP6V1G21
NM_032569N-PAC1
NM_181798KCNQ11
NM_000218KCNQ11
NM_130446KLHL61
NM_174968ST3GAL31
NM_174971ST3GAL31
NM_174964ST3GAL31
NM_174963ST3GAL31
NM_174969ST3GAL31
NM_174965ST3GAL31
NM_174966ST3GAL31
NM_174970ST3GAL31
NM_006279ST3GAL31
NM_174967ST3GAL31
NM_005639SYT11
XM_001130364LOC7284171
XM_001130184LOC7308431
XM_379273FLJ141861
NM_145206VTI1A1
NM_032242PLXNA11
NM_021083XK1
NM_001421ELF41
NM_024946NIP301
NM_198098AQP11
NM_0010129941
NM_032808LINGO11
NM_024040CUEDC21
NM_130438DYRK1A1
NM_101395DYRK1A1
NM_130437DYRK1A1
NM_015326SRGAP21
NM_139075TPCN21
NM_024779PIP5K2C1
NM_020951ZNF5291
NM_020975RET1
NM_015011MYO161
NM_182757IBRDC21
NM_001009922RCHY11
NM_001008925RCHY11
NM_015436RCHY11
NM_002662PLD11
NM_057170GIT21
NM_057169GIT21
NM_014776GIT21
NM_053031MYLK1
NM_053025MYLK1
NM_053032MYLK1
NM_053028MYLK1
NM_053026MYLK1
NM_053027MYLK1
NM_014601EHD21
NM_152666PLD51
XM_931447SETD51
XM_944298SETD51
XM_944295SETD51
XM_931444SETD51
NM_173793LOC1289771
NM_001042574CRTC31
NM_022769CRTC31
NM_000387SLC25A201
XM_001133926SLC25A201
XM_001132353FLJ444501
XM_001133195FLJ444501
NM_153711FAM26E1
NM_053053TADA1L1
NM_001035511SDHC1
NM_005159ACTC11
NM_006772SYNGAP11
NM_172069PLEKHH21
NM_0011006071
NM_016186SERPINA101
NM_002161IARS1
NM_013417IARS1
NM_014961RUFY31
NM_014647KIAA04301
NM_006918SC5DL1
NM_001024956SC5DL1
NM_004454ETV51
NM_005734HIPK31
NM_001048200HIPK31
NM_003617RGS51
NM_001713BHMT1
NM_175053KRT741
NM_031490LONP21
NM_173635FLJ402351
NM_001024647RAB3IP1
NM_022456RAB3IP1
NM_175624RAB3IP1
NM_175625RAB3IP1
NM_175623RAB3IP1
NM_014256B3GNT31
NM_001386DPYSL21
NM_003227TFR21
NM_0209111
NM_194286KIAA18531
NM_031215CABLES21
NM_002885RAP1GAP1
NM_178173CCDC361
NM_004776B4GALT51
NM_002242KCNJ131
NM_022138SMOC21
NM_004408DNM11
NM_001005336DNM11
NM_012219MRAS1
NM_0010850491
NM_181877ZSCAN21
NM_001001669FLJ416031
NM_001931DLAT1
NM_015275KIAA10331
NM_148170CTSC1
NM_033389SSH21
NM_015282CLASP11
NM_203464AK3L11
NM_013410AK3L11
NM_001005353AK3L11
XM_001132080LOC7310071
XM_928632LOC6456191
NM_007249KLF121
NM_005086SSPN1
NM_006080SEMA3A1
NM_007175ERLIN21
XM_001125827LOC7278201
NM_020161DKFZp547H0251
NM_004119FLT31
NM_014562OTX11
XM_376795FLJ458721
XM_940037FLJ458721
XM_938268TBX181
NM_001080508TBX181
NM_007256SLCO2B11
NM_033210ZNF5021
NM_017924C14orf1191
XM_939547ZNF6971
NM_001080470ZNF6971
NM_000452SLC10A21
NM_001011885BTBD11
NM_025238BTBD11
NM_004780TCEAL11
NM_001006640TCEAL11
NM_001006639TCEAL11
NM_003369UVRAG1
NM_001009909LUZP21
NM_015186VPS13A1
NM_138773SLC25A461
NM_182558C12orf361
NM_0209101
XM_944198LOC4002361
XM_378472LOC4002361
NM_206921C6orf2041
NM_015457ZDHHC51
NM_001003652SMAD21
NM_005901SMAD21
NM_032214SLA21
NM_175077SLA21
NM_153027FLJ316591
NM_001878CRABP21
NM_007137ZNF811
NM_005069SIM21
NM_014345ZNF3181
NM_017633FAM46A1
NM_153497MAP3K7IP11
NM_014398LAMP31
NM_017944USP471
NM_0010996261
NM_019557FAM54B1
NM_0010996271
NM_0010996251
NM_007127VIL11
XM_001134380LOC4419151
XM_001134064LOC4419151
NM_017875SLC25A381
NM_015935KIAA08591
NM_014955KIAA08591
NM_001007239KIAA08591
NM_052911ESCO11
NM_152219GJC11
NM_007021C10orf101
NM_005475SH2B31
NM_020405PLXDC11
NM_005271GLUD11
NM_012084GLUD21
NM_018146RNMTL11
NM_144571CNOT6L1
NM_032827ATOH81
NM_194318B3GALTL1
NM_016089ZNF5891
NM_000066C8B1
NM_031890CECR61
NM_015253WSCD11
NM_015584POLDIP21
NM_020781ZNF3981
NM_170686ZNF3981
NM_013255MKLN11
NM_001001389CD441
NM_001001390CD441
NM_001001391CD441
NM_001001392CD441
NM_000610CD441
NM_001012511GOSR21
NM_002981CCL11
NM_006020ALKBH11
NM_005487HMG2L11
NM_014250HMG2L11
NM_001003681HMG2L11
NM_024626VTCN11
NM_019067GNL3L1
NM_006827TMED101
NM_1736551
NM_017772TBC1D22B1
NM_006521TFE31
NM_005134PPP4R11
NM_001042388PPP4R11
NM_005225E2F11
NM_020373TMEM16B1
NM_000068CACNA1A1
NM_023035CACNA1A1
XM_001133209LOC6465131
XM_001132717LOC6465131
NM_173065IL28RA1
NM_173064IL28RA1
NM_170743IL28RA1
NM_005047PSMD51
NM_001978EPB491
NM_006943SOX121
NM_002235KCNA61
NM_130459TOR2A1
NM_004355CD741
NM_001025159CD741
NM_001025158CD741
NM_032572RNASE71
NM_017849TMEM1271
NM_018667SMPD31
NM_178457C20orf1741
NM_015379BRI31
NM_014337PPIL21
NM_012420IFIT51
NM_015471NSL11
NM_001042549NSL11
NM_002535OAS21
NM_001042599ERBB41
NM_005235ERBB41
NM_022910NDRG41
NM_020465NDRG41
NM_001039591USP9X1
NM_001039590USP9X1
NM_013975LIG31
NM_020796SEMA6A1
NM_013365GGA11
NM_001001560GGA11
NM_001678ATP1B21
NM_003799RNMT1
NM_001007271DUSP131
NM_001029882AHDC11
NM_005505SCARB11
NM_006194PAX91
NM_002188IL131
NM_001030005CPLX31
NM_032325MGC111021
NM_005063SCD1
NM_152268PARS21
NM_152571C9orf1631
NM_002827PTPN11
NM_001918DBT1
NM_178013PRIMA11
NM_052941GBP41
NM_001032726RAB411
XM_936809LOC3429181
XM_292779LOC3429181
NM_006888CALM11
NM_004427PHC21
NM_198040PHC21
NM_006097MYL91
NM_181526MYL91
NM_144564SLC39A31
XM_942072CPN21
NM_001080513CPN21
NM_001004342TRIM671
NM_019014POLR1B1
NM_016057COPZ11
NM_005439MLF21
NM_000024ADRB21
NM_021049MAGEA51
NM_003387WIPF11
NM_001077269WIPF11
NM_144991C21orf291
NM_012146DUX11
NM_152787MAP3K7IP31
NM_175902FLJ222221
NM_014112TRPS11
NM_000525KCNJ111
NM_032294CAMKK11
NM_172206CAMKK11
NM_001033518WIPI21
NM_001033519WIPI21
NM_015610WIPI21
NM_001033520WIPI21
NM_016003WIPI21
NM_182635C9orf1641
NM_020919ALS21
NM_030667PTPRO1
NM_002848PTPRO1
NM_030668PTPRO1
NM_030669PTPRO1
NM_030671PTPRO1
NM_030670PTPRO1
NM_000321RB11
NM_002444MSN1
NM_012216MID21
NM_052817MID21
NM_0011097541
NM_002837PTPRB1
NM_0529271
NM_014770CENTG11
NM_024095ASB81
NM_001267CHAD1
NM_032822FLJ146681
NM_138813ATP8B31
NM_001079535CPEB11
NM_001079534CPEB11
NM_030594CPEB11
NM_001079533CPEB11
NM_013348KCNJ141
NM_170720KCNJ141
NM_000663ABAT1
NM_020686ABAT1
NM_003854IL1RL21
NM_003549HYAL31
NM_020662MRS2L1
NM_016173HEMK11
NM_031426C9orf581
NM_005259GDF81
NM_003634NIPSNAP11
NM_006546IGF2BP11
XM_001125918LOC7278721
NM_002074GNB11
NM_198484ZNF6211
NM_0010984141
NM_001552IGFBP41
NM_022112P53AIP11
XM_940069PPP1R3E1
XM_927029PPP1R3E1
NM_032538TTBK11
NM_014718CLSTN31
NM_000674ADORA11
NM_001048230ADORA11
NM_000574CD551
NM_017460CYP3A41
NM_002404MFAP41
NM_138278BNIPL1
NM_080545AP1G21
NM_003917AP1G21
NM_012266DNAJB51
XM_001130466DNAJB51
NM_003395WNT9A1
NM_130468CHST141
NM_174902LDLRAD31
NM_001037293PALM21
NM_053016PALM21
NM_001077350C16orf351
NM_001039476C16orf351
NM_020792AADACL11
NM_015508TIPARP1
NM_004913C16orf71
NM_006037HDAC41
NM_017586C9orf71
NM_144570HN1L1
NM_197941ADAMTS61
NM_0010986221
NM_015299KIAA03231
NM_014286FREQ1
NM_001002026CLDN181
NM_016369CLDN181
NM_022821ELOVL11
NM_0011016761
NM_005779LHFPL21
NM_000539RHO1
NM_018899PCDHAC21
NM_018900PCDHA11
NM_018902PCDHA111
NM_031849PCDHA61
NM_018905PCDHA21
NM_018904PCDHA131
NM_031860PCDHA101
NM_018907PCDHA41
NM_018909PCDHA61
NM_018910PCDHA71
NM_018911PCDHA81
NM_018906PCDHA31
NM_018903PCDHA121
NM_018898PCDHAC11
NM_031857PCDHA91
NM_031411PCDHA11
NM_018908PCDHA51
NM_018901PCDHA101
NM_013336SEC61A11
NM_015365AMMECR11
NM_001025580AMMECR11
NM_001025109CD341
NM_001773CD341
NM_033027AXUD11
NM_013286RBM15B1
NM_015332NUDCD31
NM_020347LZTFL11
NM_006830UQCR1
XM_939663KIAA15531
NM_001080450KIAA15531
NM_002351SH2D1A1
NM_177401MIDN1
XM_001132876LOC7288671
XM_001133466LOC7313381
NM_002310LIFR1
NM_173075APBB21
NM_014015DEXI1
NM_148571MRPL271
NM_024625ZC3HAV11
NM_006237POU4F11
NM_017703FBXL121
NM_001447FAT21
NM_022773TMEM1121
NM_001789CDC25A1
NM_201567CDC25A1
NM_198867ALKBH61
NM_001008493ENAH1
NM_018212ENAH1
NM_012465TLL21
NM_001032380RHOBTB11
NM_198225RHOBTB11
NM_014836RHOBTB11
NM_030623SKIP1
NM_031432UCK11
NM_015511C20orf41
NM_018724IL201
NM_152253CHKB1
NM_015527TBC1D10B1
NM_033119NKD11
NM_175910ZNF4931
NM_001076678ZNF4931
NM_000916OXTR1
NM_198401ANKRD461
NM_022059CXCL161
NM_001944DSG31
NM_021072HCN11
XM_930224LOC6471901
XM_941815LOC6471901
NM_000554CRX1
NM_133496SLC30A71
NM_001798CDK21
NM_052827CDK21
NM_001543NDST11
NM_194247HNRPA31
NM_002959SORT11
NM_020117LARS1
NM_000439PCSK11
NM_015983UBE2D41
NM_024416OGN1
NM_014057OGN1
NM_033014OGN1
NM_021191NEUROD41
NM_004187JARID1C1
NM_001776ENTPD11
NM_0010981751
NM_000966RARG1
NM_001042728RARG1
NM_001002906XKRY21
NM_004677XKRY1
NM_014184CNIH41
NM_0011025751
NM_018182C17orf631
NM_001077498C17orf631
NM_004167CCL151
NM_032964CCL151
NM_152916EMR21
NM_152918EMR21
NM_152917EMR21
NM_152920EMR21
NM_152921EMR21
NM_013447EMR21
NM_152919EMR21
NM_005538INHBC1
NM_080820DTD11
NM_001083591CUGBP21
NM_001025077CUGBP21
NM_006561CUGBP21
NM_001025076CUGBP21
NM_031442TMEM471
NM_018161NADSYN11
NM_176824BBS71
NM_015002FBXO211
NM_033624FBXO211
NM_144721THAP61
NM_001004308ZCCHC161
NM_017769KIAA13331
NM_001080412ZBTB381
XM_001133510ZBTB381
NM_000419ITGA2B1
NM_000310PPT11
NM_020742NLGN4X1
NM_181332NLGN4X1
XM_379228LOC4010931
XM_944985LOC4010931
NM_001012720RGR1
NM_002921RGR1
NM_001012722RGR1
NM_016563RASL121
NM_014289CAPN61
NM_000210ITGA61
NM_001079818ITGA61
XM_001133294LOC7290851
NM_198468C6orf1671
NM_024522FAM77C1
NM_004256SLC22A131
NM_001018111PODXL1
NM_005397PODXL1
NM_016485VTA11
NM_001024455RGAG41
NM_021813BACH21
NM_020148SPIRE11
NM_015343DULLARD1
NM_001010887ASAH3L1
NM_0010986241
NM_033290MID11
NM_000381MID11
NM_017410HOXC131
NM_152686DNAJC181
NM_001076787TP53I111
NM_006034TP53I111
NM_001081755ELN1
NM_001081754ELN1
NM_001081752ELN1
NM_000501ELN1
NM_001081753ELN1
NM_006426DPYSL41
NM_174975SEC14L31
NM_145230ATP6V0E21
NM_0011005921
NM_006420ARFGEF21
NM_207340ZDHHC241
NM_016474C3orf191
NM_020956PRX1
NM_172214CAMKK21
NM_172215CAMKK21
XM_001133170LOC7288241
XM_001129120LOC7290341
NM_000345SNCA1
NM_007308SNCA1
NM_172071RC3H11
NM_133369UNC5A1
NM_016019LUC7L21
NM_017826SOHLH21
NM_032866CGNL11
NM_020715PLEKHH11
NM_016357LIMA11
NM_057749CCNE21
XM_941810LOC2840231
XM_929835LOC2840231
NM_181714C6orf1521
NM_006345SLC30A91
NM_030641APOL61
NM_022060ABHD41
NM_203394E2F71
NM_001042705IQCJ1
NM_032414PROK11
NM_052862RCSD11
NM_173598KSR21
NM_018440PAG11
NM_021229NTN41
NM_022367SEMA4A1
NM_144770RBM111
NM_001924GADD45A1
NM_207361FREM21
NM_001011708GTPBP91
NM_013341GTPBP91
NM_130901OTUD7A1
NM_015354NUP1881
NM_005909MAP1B1
NM_000033ABCD11
NM_145245EVI5L1
NM_002978SCNN1D1
NM_0010087811
XM_936538FAT31
XM_926199FAT31
NM_206853QKI1
NM_206854QKI1
NM_206855QKI1
NM_005756GPR641
NM_001079859GPR641
NM_001079858GPR641
NM_001079860GPR641
NM_015913TXNDC121
NM_001939DRP21
NM_001002811PDE4DIP1
NM_001002812PDE4DIP1
XM_001126165LOC7279271
NM_002855PVRL11
NM_020731AHRR1
NM_002376MARK31
NM_207315LOC1296071
NM_014925R3HDM21
NM_001029875RGS7BP1
XM_001132928LOC7289691
NM_004807HS6ST11
NM_022153C10orf541
NM_025015HSPA12A1
NM_001103ACTN21
XM_001128627LOC7281831
XM_001133612LOC7318731
NM_015481ZNF3851
XM_001132728LOC7323141
XM_001128520LOC7287991
NM_015226KIAA03501
NM_153188TNPO11
NM_002270TNPO11
NM_013262MYLIP1
NM_018509LRRC591
NM_145007NLRP111
NM_001081686G6PC21
NM_021176G6PC21
NM_003882WISP11
NM_031466NIBP1
NM_198896RAB6A1
NM_002869RAB6A1
NM_001077637LOC1507861
NM_014233UBTF1
NM_001076683UBTF1
NM_001076684UBTF1
NM_001033053NLRP11
NM_024415DDX41
NM_014763MRPL191
NM_152635OIT31
NM_1449931
NM_024837ATP8B41
NM_001044722CSNK1G31
NM_001031812CSNK1G31
NM_001044723CSNK1G31
NM_004384CSNK1G31
NM_001677ATP1B11
NM_016235GPRC5B1
NM_006534NCOA31
NM_181659NCOA31
XM_941162LOC4009501
XM_376049LOC4009501
NM_016376ANKFY11
NM_006203PDE4D1
NM_0011046311
NM_013354CNOT71
NM_152996ST6GALNAC31
NM_003621PPFIBP21
NM_006606RBBP91
NM_020367PARP111
NM_198846SIGLEC61
NM_001295CCR11
NM_018178GOLPH3L1
NM_000450SELE1
NM_006300ZNF2301
NM_001040177AKR1CL21
NM_144578C14orf321
NM_000926PGR1
NM_0177821
NM_033397KIAA17541
NM_153235TXLNB1
NM_198476C19orf541
NM_001042413GLIS31
NM_152629GLIS31
NM_207442FLJ397791
NM_005376MYCL11
NM_015042ZNF6091
NM_016083CNR11
NM_033181CNR11
NM_144974CCDC1221
NM_020129LGALS141
NM_203471LGALS141
NM_138419FAM54A1
NM_0010992861
NM_015058KIAA05641
NM_147180PPP3R21
NM_153690FAM43A1
XM_086001LOC1480031
XM_942526LOC6511021
NM_198485FAM79B1
NM_0208461
NM_017754C6orf1071
NM_005482PIGK1
NM_001039580MAP91
NM_003269NR2E11
NM_032521PARD6B1
NM_0011013391
NM_015554GLCE1
NM_033426KIAA17371
NM_014809KIAA03191
NM_0010129671
NM_020935USP371
NM_020714ZNF4901
NM_002103GYS11
NM_207672GRIPAP11
NM_177538CYP20A11
NM_001039772LOC6439231
NM_004730ETF11
NM_013268LGALS131
NM_174900ZFP421
NM_007146VEZF11
NM_004293GDA1
NM_014897ZNF6521
NM_017682BEST21
NM_182515ZNF7141
NM_001080497MEGF91
XM_936860MEGF91
XM_001134423C9orf1441
NM_182898CREB51
NM_004904CREB51
NM_001011666CREB51
NM_182899CREB51
NM_002731PRKACB1
NM_182948PRKACB1

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317