Predicted Off-targets for siRNA "aagguguuguugauaccgaug" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

3 hits were found for GGUGUUGUUGAUACCGAUG (2 guide strand hits and 1 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_031277 RNF17 1629 1647 GGaGUUGUUGAUACCcAUG54 2 12 c false   <90%   5120
NM_173827 COX18 898 916 GGUGUUGaUGAUACCaAUu6 3 7 c false   <90%   4523


Hits to Sense strand


AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_024867 FLJ23577 1753 1771 gAgCGGaAUCAACAACACC12 3 12 bc false   <90%   5651


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1682
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_032105PPP1R12B3
NM_002481PPP1R12B3
NM_005840SPRY33
NM_0011096893
NM_021061ZNF2503
NM_030806C1orf213
NM_139057ADAMTS173
NM_002336LRP63
NM_021101CLDN13
NM_014840NUAK12
NM_001259CDK62
NM_015020PHLPPL2
NM_001360DHCR72
NM_020433JPH22
NM_033360KRAS2
NM_031469SH3BGRL22
NM_0011132392
NM_022740HIPK22
NM_020918GPAM2
XM_001125827LOC7278202
NM_001167BIRC42
NM_181701QSOX22
NM_152482C19orf252
NM_014292CBX62
NM_023068SIGLEC12
NM_022491SUDS32
NM_007271STK382
NM_020778ALPK32
NM_002098GUCA1B2
NM_003873NRP12
XM_001129224ITGB52
NM_001083314CHMP1A2
NM_002768CHMP1A2
NM_015299KIAA03232
NM_080797DIDO12
NM_153718NUP622
NM_012346NUP622
NM_153719NUP622
NM_016553NUP622
NM_001048198SNHG3-RCC12
NM_001048197SNHG3-RCC12
NM_001048195RCC12
NM_001269RCC12
NM_001048194RCC12
NM_001048199SNHG3-RCC12
NM_138572TBN2
XM_001130409LOC7294882
NM_017658KLHL282
NM_024947PHC32
XM_001134215PDPR2
NM_017990PDPR2
NM_005683GPR552
NM_002760PRKY2
NM_000663ABAT2
NM_020686ABAT2
NM_017650PPP1R9A2
NM_005158ABL22
NM_007314ABL22
NM_0011001082
NM_015291DNAJC162
NM_017590ZC3H7B2
NM_003017SFRS32
NM_148571MRPL272
NM_020718USP312
NM_001008710RBPMS2
NM_001008711RBPMS2
NM_006867RBPMS2
NM_007030TPPP2
NM_031908C1QTNF22
NM_0121942
NM_207577MAP62
NM_014661FAM53B2
NM_003808TNFSF132
NM_172088TNFSF132
NM_172087TNFSF132
NM_172089TNFSF12-TNFSF132
NM_001033047NPNT2
NM_018979WNK12
XM_928464LOC1465172
NM_194071CREB3L22
NM_004296RGS62
NM_012214MGAT4A2
NM_015995KLF132
NM_012316KPNA62
NM_005955MTF12
NM_018700TRIM362
NM_001040102TMEM102
NM_033207TMEM102
NM_001040103TMEM102
NM_0245242
NM_001830CLCN42
NM_0011003902
NM_152558IQCE2
NM_001634AMD12
NM_001033059AMD12
NM_000875IGF1R2
NM_139015SPPL32
NM_052909KIAA19092
NM_006990WASF22
XM_001127417LOC6479092
NM_020825CRAMP1L2
NM_006749SLC20A22
NM_153442GPR262
NM_021137TNFAIP12
NM_001003891PCQAP2
NM_015889PCQAP2
NM_001001938C9orf472
NM_004976KCNC12
NM_001106ACVR2B2
NM_018941CLN82
NM_182526C14orf832
NM_004852ONECUT22
NM_002501NFIX2
NM_005324H3F3B2
NM_022726ELOVL42
NM_018045BSDC12
XM_001129116MGC396062
XM_001127817MGC396062
NM_014820TOMM70A2
NM_001034852SMOC12
NM_022137SMOC12
NM_014906PPM1E1
NM_003994KITLG1
NM_000899KITLG1
NM_002923RGS21
NM_001007229SPOP1
NM_001007230SPOP1
NM_001007226SPOP1
NM_003563SPOP1
NM_001007228SPOP1
NM_001007227SPOP1
NM_020151STARD71
NM_000237LPL1
NM_152676FBXO151
NM_018003UACA1
NM_001008224UACA1
XM_928632LOC6456191
XM_001132080LOC7310071
NM_006876B3GNT11
NM_207446LOC4004511
NM_016337EVL1
NM_018362LIN7C1
NM_001040649ACP11
NM_144706C2orf151
NM_004975KCNB11
NM_004823KCNK61
NM_033081DIDO11
NM_001080427THSD7B1
XM_937523KIAA16791
NM_014096SLC43A31
NM_199329SLC43A31
NM_017611SLC43A31
NM_014844KIAA03291
NM_025188TRIM451
NM_145810CDCA71
NM_031942CDCA71
NM_139276STAT31
NM_003150STAT31
NM_213662STAT31
NM_032832LRP111
NM_0011008291
NM_170724PKHD11
NM_022783DEPDC61
NM_014056HIGD1A1
NM_0010996681
NM_0010996691
NM_004370COL12A11
NM_080645COL12A11
NM_002048GAS11
NM_032312YIPF41
NM_003629PIK3R31
NM_207390FLJ459101
NM_006901MYO9A1
NM_004767GPR37L11
NM_020880ZNF5301
NM_000276OCRL1
NM_001587OCRL1
NM_006814PSMF11
NM_178578PSMF11
XM_001128030LOC7284111
NM_005938MLLT71
NM_000345SNCA1
NM_004985KRAS1
NM_017438SETD41
NM_024770METTL81
NM_024512LRRC21
NM_021135RPS6KA21
NM_001006932RPS6KA21
NM_002253KDR1
NM_001007525NWD11
NM_152307C14orf1721
NM_170774RASSF21
NM_014737RASSF21
NM_207459FLJ357671
NM_182972IRF2BP21
NM_001077397IRF2BP21
NM_033102SLC45A31
NM_000617SLC11A21
NM_006139CD281
NM_031417MARK41
NM_007146VEZF11
NM_005934MLLT11
NM_000343SLC5A11
NM_144969ZDHHC151
NM_018921PCDHGA91
NM_018923PCDHGB21
NM_018929PCDHGC51
NM_002588PCDHGC31
NM_018917PCDHGA41
NM_018918PCDHGA51
NM_032088PCDHGA81
NM_018915PCDHGA21
NM_018922PCDHGB11
NM_003736PCDHGB41
NM_018927PCDHGB71
NM_018924PCDHGB31
NM_018914PCDHGA111
NM_018920PCDHGA71
NM_018913PCDHGA101
NM_018916PCDHGA31
NM_018926PCDHGB61
NM_003735PCDHGA121
NM_032403PCDHGC31
NM_032092PCDHGA111
NM_018912PCDHGA11
NM_018919PCDHGA61
NM_018925PCDHGB51
NM_018928PCDHGC41
NM_172128CAMK2D1
NM_172127CAMK2D1
NM_001638APOF1
NM_003417ZNF2641
NM_004491GRLF11
NM_020766PCDH191
NM_0011052431
NM_198081SCML41
NM_005368MB1
NM_203378MB1
NM_203377MB1
NM_032291SGIP11
NM_021922FANCE1
NM_020533MCOLN11
NM_002604PDE7A1
NM_025204TRABD1
NM_177924ASAH11
NM_004315ASAH11
NM_020805KLHL141
NM_0011055671
NM_0011055661
NM_022113KIF13A1
NM_000310PPT11
NM_002356MARCKS1
NM_170665ATP2A21
NM_001681ATP2A21
NM_005156ROD11
NM_020886USP281
NM_020714ZNF4901
NM_175736FMNL31
NM_198900FMNL31
NM_022898BCL11B1
NM_138576BCL11B1
XM_001133760ZNF5191
NM_017602OTUD51
NM_003155STC11
NM_0011049251
NM_018257PCMTD21
NM_015077SARM11
NM_031480RIOK11
NM_153005RIOK11
NM_152424FAM123B1
NM_022058SLC4A101
NM_005776CNIH1
NM_138484SGOL11
NM_001012412SGOL11
NM_001012410SGOL11
NM_198995C18orf341
NM_0011055281
NM_032590FBXL101
NM_001005366FBXL101
NM_000212ITGB31
NM_004215EBAG91
NM_198120EBAG91
NM_012239SIRT31
NM_001017524SIRT31
NM_001037631CTLA41
NM_005214CTLA41
NM_001171ABCC61
NM_030969TMEM14B1
NM_203463LASS61
NM_030780SLC25A321
NM_053055THEM41
NM_000800FGF11
NM_033137FGF11
NM_033136FGF11
XM_001128037LOC7286541
XM_001129553LOC7314131
NM_017831RNF1251
XM_945536LOC4009601
XM_934552LOC4009601
NM_025081KIAA13051
NM_198460GBP61
NM_015898ZBTB7A1
NM_003288TPD52L21
NM_199359TPD52L21
NM_199362TPD52L21
NM_199360TPD52L21
NM_199363TPD52L21
NM_199361TPD52L21
NM_173664ARL101
NM_001029870ANKRD561
NM_201574SLC4A31
NM_005070SLC4A31
NM_198315LOH11CR2A1
NM_145013C11orf451
NM_001004317LIN28B1
NM_020781ZNF3981
NM_170686ZNF3981
NM_005011NRF11
NM_001040110NRF11
NM_021195CLDN61
NM_018106ZDHHC41
NM_005785RNF411
NM_194359RNF411
NM_194358RNF411
NM_001144AMFR1
NM_014874MFN21
NM_203327SLC23A21
NM_005116SLC23A21
NM_003956CH25H1
NM_001001396ATP2B41
NM_001684ATP2B41
NM_024293C2orf171
NM_001841CNR21
NM_002062GLP1R1
NM_001012427FOXP41
NM_138457FOXP41
NM_001012426FOXP41
NM_014647KIAA04301
NM_014636RALGPS11
NM_138473SP11
NM_004597SNRPD21
NM_177542SNRPD21
NM_003371VAV21
NM_001079911DMP11
NM_004407DMP11
NM_016382CD2441
NM_015568PPP1R16B1
XM_001133503LOC6450271
NM_182925FLT41
NM_012089ABCB101
NM_002033FUT41
NM_002404MFAP41
NM_000112SLC26A21
NM_012179FBXO71
NM_001033024FBXO71
NM_197958LARP61
NM_017987RUFY21
NM_014767SPOCK21
NM_001080421UNC13A1
NM_024569MPZL11
NM_003953MPZL11
NM_013989DIO21
NM_001007023DIO21
NM_000793DIO21
NM_004295TRAF41
NM_032983CASP21
XM_001134423C9orf1441
NM_021629GNB41
XM_001125918LOC7278721
NM_001607ACAA11
NM_005829AP3S21
NM_001012642GRAMD21
NM_001002909GPATCH81
NM_022470ZMAT31
NM_152240ZMAT31
NM_013332HIG21
NM_0010987861
NM_182587C2orf211
NM_016645NGRN1
NM_001033088NGRN1
NM_004829NCR11
NM_152624DCP21
NM_006888CALM11
XM_001129290STARD91
XM_001129482STARD91
NM_144636CHCHD41
NM_0010985021
NM_014946SPAST1
NM_199436SPAST1
NM_001046SLC12A21
NM_006624ZMYND111
NM_033055HIAT11
NM_181502SPINLW11
NM_020398SPINLW11
NM_014982PCNX1
NM_0011003971
NM_007023RAPGEF41
NM_017709FAM46C1
NM_182578THEM51
NM_032940POLR2C1
XM_499022LOC4411241
NM_020531C20orf31
NM_022758C6orf1061
NM_024294C6orf1061
NM_033259CAMK2N21
NM_004992MECP21
NM_001087AAMP1
NM_177457LYNX11
NM_177477LYNX11
NM_177476LYNX11
NM_024587TMEM531
NM_002466MYBL21
NM_015285WDR71
NM_052834WDR71
NM_153367C10orf561
NM_133646ZAK1
NM_006885ATBF11
NM_001077706LFDH1
NM_198686RAB151
NM_004050BCL2L21
NM_145176SLC2A121
NM_030578MGC40931
NM_016272TOB21
NM_153711FAM26E1
NM_145230ATP6V0E21
NM_0011005921
NM_015317PUM21
NM_000128F111
NM_144717IL20RB1
NM_003421ZNF37A1
NM_001007094ZNF37A1
NM_006534NCOA31
NM_181659NCOA31
NM_002187IL12B1
NM_078483SLC36A11
NM_001012418LOC3401561
NM_001942DSG11
NM_004291CARTPT1
NM_033389SSH21
NM_003034ST8SIA11
NM_032505KBTBD81
NM_025130HKDC11
NM_080876DUSP191
NM_006203PDE4D1
NM_0011046311
NM_013336SEC61A11
NM_015042ZNF6091
NM_004497FOXA31
XM_945080LOC6436231
XM_932892LOC6436231
NM_005779LHFPL21
NM_000378WT11
NM_024424WT11
NM_024425WT11
NM_024426WT11
NM_015387PREI31
NM_199482PREI31
NM_0011008191
NM_207436FLJ429571
XM_042978FRMPD31
XM_937007FRMPD31
NM_032558HIATL11
NM_018313PBRM11
NM_181042PBRM11
NM_018165PBRM11
NM_002968SALL11
NM_153263ZNF5491
NM_001042576RRBP11
NM_004587RRBP11
XM_941810LOC2840231
XM_929835LOC2840231
NM_001025073C3orf171
NM_015412C3orf171
NM_001025072C3orf171
NM_015447CAMSAP11
NM_015284KIAA04671
NM_174913C14orf211
NM_000259MYO5A1
XM_376247LOC4010741
NM_000574CD551
NM_003108SOX111
NM_000351STS1
NM_0010985121
NM_006258PRKG11
XM_001128311LOC7314491
XM_001129750LOC7289991
XM_001132378PTP4A21
XM_001132367PTP4A21
XM_001132372PTP4A21
XM_001132369PTP4A21
XM_001132357PTP4A21
NM_017728TMEM1041
NM_016061YPEL51
NM_001025252TPD521
NM_001025253TPD521
NM_005079TPD521
NM_001007097NTRK21
NM_032167RUNDC2A1
NM_001080414KIAA15091
XM_496003KIAA15091
XM_941642KIAA15091
NM_0190661
NM_017896C20orf111
NM_024308MGC41721
NM_018440PAG11
NM_001682ATP2B11
NM_001001323ATP2B11
NM_007011ABHD21
NM_152924ABHD21
NM_006931SLC2A31
NM_052907TMEM132B1
NM_003211TDG1
NM_019022TXNDC101
NM_021826FASTKD51
NM_153246MGC454911
NM_0011055651
XM_166203SMTNL11
NM_177999ASB61
NM_017873ASB61
NM_173683XKR61
NM_022819PLA2G2F1
XM_001132091LOC7312081
NM_018566YOD11
NM_019072SGTB1
NM_001079536ART51
NM_053017ART51
NM_001042697ZSWIM71
NM_001042698ZSWIM71
NM_005546ITK1
NM_031845MAP21
NM_031847MAP21
NM_001039538MAP21
NM_002374MAP21
NM_001007156NTRK31
NM_000256MYBPC31
NM_024745SHCBP11
NM_000302PLOD11
NM_182832PLAC41
NM_006725CD61
NM_024311MFSD111
NM_012471TRPC51
NM_000578SLC11A11
NM_001818AKR1C41
NM_175884FLJ360311
NM_002390ADAM111
NM_001005361DNM21
NM_004945DNM21
NM_001005362DNM21
NM_001005360DNM21
NM_015553PIP3-E1
NM_000579CCR51
NM_0011001681
NM_0011055361
NM_018181ZNF5321
NM_020348CNNM11
NM_153675FOXA21
NM_021784FOXA21
NM_013999MEOX11
NM_004527MEOX11
NM_001040002MEOX11
NM_012424RPS6KC11
NM_001508GPR391
NM_024017HOXB91
NM_032817ITIH51
NM_030569ITIH51
NM_001005609EDA1
NM_001399EDA1
NM_003392WNT5A1
NM_032039ITFG31
XM_001125719LOC7277511
XM_001125942LOC7278491
NM_001013649LOC3889691
NM_199131VAX11
XM_065166KIAA19571
XM_939576KIAA19571
NM_0153021
NM_032801JAM31
NM_032373PCGF51
NM_001008493ENAH1
NM_018212ENAH1
NM_020957PCDHB161
NM_0011111131
NM_005339HIP21
NM_0011111121
NM_001077497PRR31
NM_025263PRR31
NM_0333901
NM_007014WWP21
NM_199424WWP21
NM_021067GINS11
NM_138434C7orf291
NM_020375C12orf51
NM_145185MAP2K71
NM_001040647RCP91
NM_001040648RCP91
NM_014478RCP91
NM_052855ANKRD401
NM_1449931
NM_014685HERPUD11
NM_001010990HERPUD11
NM_001010989HERPUD11
NM_015070ZC3H131
NM_017749FLJ202941
NM_007203PALM2-AKAP21
NM_147150PALM2-AKAP21
NM_001004065AKAP21
NM_003750EIF3S101
NM_021964ZNF1481
NM_198261RSRC21
NM_198262RSRC21
NM_023012RSRC21
NM_152409C5orf241
NM_000125ESR11
NM_002056GFPT11
NM_001080498EMR41
NM_014178STXBP61
NM_006773DDX181
NM_032996CASP91
NM_001229CASP91
NM_015025MYT1L1
NM_016641MIR161
XM_936101LOC6420311
NM_001033055AIPL11
NM_001033054AIPL11
NM_014336AIPL11
NM_006778TRIM101
NM_052828TRIM101
XM_001132728LOC7323141
XM_001128520LOC7287991
NM_003648DGKD1
NM_152879DGKD1
NM_152687C5orf291
NM_172107KCNQ21
NM_172106KCNQ21
NM_021823PPCDC1
NM_004302ACVR1B1
NM_001923DDB11
NM_199342CCDC231
NM_014077FAM32A1
NM_139012MAPK141
NM_139014MAPK141
NM_001315MAPK141
NM_178526SLC25A421
NM_153029N4BP11
NM_000168GLI31
NM_001039397FLJ402441
NM_198582KLHL301
NM_014232VAMP21
NM_033018PCTK11
NM_006201PCTK11
NM_013443ST6GALNAC61
NM_005602CLDN111
NM_016185HN11
NM_001002032HN11
NM_001002033HN11
NM_181425FXN1
NM_000144FXN1
NM_000230LEP1
NM_001040458ARTS-11
NM_004698PRPF31
NM_003077SMARCD21
NM_0010984261
NM_017856GEMIN81
NM_001042479GEMIN81
NM_001042480GEMIN81
XM_942780SYNPO21
NM_207307C3orf251
NM_153188TNPO11
NM_002270TNPO11
NM_020792AADACL11
NM_016018PHF20L11
XM_943032LOC6478051
NM_014850SRGAP31
NM_001033117SRGAP31
NM_004788UBE4A1
NM_001406EFNB31
NM_001039029LRTM21
NM_032432ABLIM21
NM_006212PFKFB21
NM_004275TRFP1
NM_145040PRKCDBP1
NM_080661GLYATL11
NM_000651CR11
NM_000573CR11
NM_001033521CSTF11
NM_001033522CSTF11
NM_001324CSTF11
NM_0207091
NM_000991RPL281
NM_030626LRRC271
NM_182485CPEB21
NM_182646CPEB21
NM_001013635LOC3878561
XM_001128921LOC3878561
NM_144580C1orf851
NM_019063EML41
NM_001040100C3orf571
NM_025191EDEM31
NM_153273IHPK11
NM_001006115IHPK11
NM_014747RIMS31
NM_178819AGPAT61
NM_014071NCOA61
NM_001003716RECQL51
NM_001039919ZNF3841
NM_001039917ZNF3841
NM_001039916ZNF3841
NM_001039920ZNF3841
NM_133476ZNF3841
NM_001039918ZNF3841
NM_170740ALDH5A11
NM_001080ALDH5A11
NM_182795NPM21
XM_001127362KIAA05741
NM_005498AP1M21
NM_000434NEU11
NM_152783D2HGDH1
NM_001430EPAS11
NM_058206SPAG11B1
NM_016512SPAG11B1
NM_138328RHBDL31
NM_194452RNF1211
NM_194453RNF1211
NM_018320RNF1211
NM_153605DKFZp667G21101
NM_152362TNFAIP8L11
NM_001007257PRDM21
NM_015866PRDM21
NM_032778MINA1
NM_153182MINA1
NM_001042533MINA1
NM_005467NAALAD21
NM_005408CCL131
NM_013959NRG11
NM_013962NRG11
NM_013961NRG11
NM_013958NRG11
NM_205852CLEC12B1
NM_145685BRF11
NM_001519BRF11
NM_001081461JMJD61
NM_181705LYRM71
NM_005036PPARA1
NM_001001928PPARA1
NM_032012C9orf51
NM_0010997341
NM_024630ZDHHC141
NM_153746ZDHHC141
NM_016065MRPS161
NM_138426GLCCI11
NM_153347TMEM86A1
NM_001006638RAB371
NM_013246CLCF11
NM_0151771
NM_020888KIAA15221
NM_0208481
NM_014282HABP41
NM_001001586ATP1A11
NM_175866UHMK11
NM_139323YWHAB1
NM_003404YWHAB1
NM_017972C14orf1181
NM_017926C14orf1181
NM_198488FAM83H1
NM_178817MRAP1
NM_203395IYD1
NM_144775SMCR81
NM_025099C17orf681
NM_020445ACTR3B1
NM_001040135ACTR3B1
NM_005678SNURF1
NM_006224PITPNA1
NM_002566P2RY111
NM_024327ZNF5761
NM_002359MAFG1
NM_032711MAFG1
NM_199262SP61
NM_173829P18SRP1
NM_004553NDUFS61
XM_001133209LOC6465131
XM_001132717LOC6465131
NM_001039656MTL51
NM_003161RPS6KB11
NM_014570ARFGAP31
NM_020310MNT1
NM_016575NT5DC31
NM_013286RBM15B1
NM_030811MRPS261
NM_207406CCDC41
NM_020429SMURF11
NM_181349SMURF11
NM_001776ENTPD11
NM_0010981751
NM_030795STMN41
NM_016138COQ71
NM_015033FNBP11
NM_015229KIAA06641
NM_005941MMP161
NM_006736DNAJB21
NM_001024660KALRN1
NM_007064KALRN1
NM_031918KLF161
NM_005894CD5L1
NM_024686TTLL71
NM_017656ZNF5621
NM_005197CHES11
NM_0010854711
NM_013242C16orf801
NM_016141DYNC1LI11
NM_006214PHYH1
NM_001037537PHYH1
NM_024636STEAP41
NM_005831CALCOCO21
NM_173598KSR21
NM_013262MYLIP1
NM_024909C6orf1341
NM_016561BFAR1
NM_006080SEMA3A1
NM_006838METAP21
NM_198549FAM73A1
NM_001040274NO1451
XM_001127052LOC7305681
XM_001130247LOC7286061
NM_032351MRPL451
XM_001126219MRPL451
NM_152395NUDT161
XM_001129439LOC7308771
XM_001127905LOC7281961
XM_938194LOC1276021
XM_059166LOC1276021
NM_019027FLJ202731
NM_0010986341
NM_001033723ZNF7041
NM_020774MIB11
NM_000084CLCN51
NM_017872THG1L1
NM_015836WARS21
NM_201263WARS21
NM_004850ROCK21
NM_005737ARL4C1
NM_000614CNTF1
NM_170768ZFP911
NM_177972TUB1
NM_003320TUB1
NM_207429FLJ458031
NM_015894STMN31
NM_181717HCG271
NM_000429MAT1A1
NM_0155621
NM_012203GRHPR1
NM_198902TSPAN31
NM_005724TSPAN31
NM_015044GGA21
NM_004716PCSK71
XM_001128785LOC7311961
XM_938842LOC6533031
NM_145039MGC163851
XM_001128698LOC7280061
XM_001134366LOC7323251
NM_001001723TMEM11
NM_006861RAB351
XM_927238LOC6439881
XM_936418LOC6473471
NM_004749TBRG41
NM_030900TBRG41
NM_199122TBRG41
NM_014337PPIL21
NM_152988SPPL2B1
NM_001077238SPPL2B1
NM_178006STARD131
NM_178007STARD131
NM_052851STARD131
NM_017583TRIM441
NM_024709C1orf1151
NM_145212MRPL301
NM_002931RING11
NM_007010DDX521
NM_152300DDX521
NM_007259VPS451
NM_005736ACTR1A1
NM_015715PLA2G31
NM_020062SLC2A4RG1
NM_012068ATF51
NM_001007237IGSF31
NM_001542IGSF31
NM_001014797KCNMA11
NM_000159GCDH1
NM_013976GCDH1
XM_929714LOC6467621
XM_935722LOC6467621
XM_938418LOC6467621
NM_080491GAB21
NM_012296GAB21
NM_194356STX21
NM_001980STX21
NM_032408BAZ1B1
NM_004927MRPL491
NM_033631LUZP11
NM_020453ATP10D1
NM_025010KLHL181
NM_017647FTSJ31
NM_0011016671
NM_005440RND21
NM_005877SF3A11
NM_001005409SF3A11
NM_144628TBC1D201
NM_030640DUSP161
NM_004161RAB1A1
NM_002522NPTX11
XM_001132528NPTX11
NM_033225CSMD11
NM_207372SH2D4B1
NM_001083536FGD31
NM_033086FGD31
NM_001006641SLC25A251
NM_001006642SLC25A251
NM_052901SLC25A251
NM_001006643SLC25A251
NM_0011107811
NM_144579SFXN51
NM_005523HOXA111
NM_015690STK361
NM_017736THUMPD11
NM_019009TOLLIP1
NM_001659ARF31
NM_001128AP1G11
NM_001030007AP1G11
NM_033342TRIM71
NM_007157ZXDB1
NM_000110DPYD1
NM_002676PMM11
NM_006374STK251
NM_0011003891
NM_145296CADM41
NM_020782KLHDC51
NM_003107SOX41
NM_031445AMMECR1L1
NM_207337AMN11
NM_148957TNFRSF191
NM_015055SWAP701
NM_002912REV3L1
NM_002052GATA41
NM_002942ROBO21
NM_030671PTPRO1
NM_030670PTPRO1
XM_001133059LOC7287721
XM_001133074LOC7287721
XM_001133066LOC7287721
NM_017699SIDT11
NM_001039999FAM83G1
NM_015264C22orf91
NM_001009880C22orf91
NM_005990STK101
NM_001112ADARB11
NM_003251THRSP1
NM_173832ZFP411
NM_152492CCDC271
NM_012199EIF2C11
NM_012400PLA2G2D1
NM_022138SMOC21
NM_006742PSKH11
NM_182507KRT801
NM_001081492KRT801
NM_002754MAPK131
NM_006547IGF2BP31
NM_006398UBD1
NM_015576ERC21
XM_938779LOC6539721
NM_007276CBX31
NM_016587CBX31
NM_006187OAS31
NM_032405TMPRSS31
NM_018584CAMK2N11
NM_000444PHEX1
NM_144698ANKRD351
NM_016407C20orf431
NM_002657PLAGL21
NM_173582PGM2L11
NM_000560CD531
NM_001040033CD531
NM_001005502CPM1
NM_198320CPM1
NM_001874CPM1
NM_001031746C10orf721
NM_003028SHB1
NM_172207CAMKK11
NM_024919FRMD11
NM_0011016761
NM_001004342TRIM671
NM_018182C17orf631
NM_001077498C17orf631
NM_015288PHF151
NM_019044CCDC931
NM_005211CSF1R1
NM_022896LPIN31
NM_001609ACADSB1
NM_173344ST3GAL11
NM_003033ST3GAL11
NM_001003407ABLIM11
NM_001003408ABLIM11
NM_002313ABLIM11
NM_006720ABLIM11
NM_018303EXOC21
NM_032421CLIP21
NM_003388CLIP21
NM_018689KIAA11991
NM_024866ADM21
NM_014976PDCD111
NM_145912NFAM11
NM_001007033CLEC6A1
NM_153262SYT141
NM_012097ARL5A1
NM_001037174ARL5A1
NM_177985ARL5A1
XM_939663KIAA15531
NM_001080450KIAA15531
NM_152757FLJ303131
NM_031444C22orf131
NM_013358PADI11
NM_020731AHRR1
NM_000818GAD21
NM_015225KIAA03671
NM_003119SPG71
NM_032501ACSS11
NM_080681COL11A21
NM_080680COL11A21
NM_080679COL11A21
NM_016089ZNF5891
NM_022832USP461
NM_002178IGFBP61
NM_144593RHEBL11
NM_147192DMBX11
NM_172225DMBX11
NM_030636KIAA17061
NM_000252MTM11
NM_014238KSR11
NM_006226PLCL11
NM_017540GALNT101
NM_198321GALNT101
NM_198468C6orf1671
NM_174940TMEM801
NM_001042463TMEM801
NM_148169FBXO171
NM_024907FBXO171
NM_017721CC2D1A1
NM_020982CLDN91
NM_016441CRIM11
NM_017712PGPEP11
NM_024701ASB131
NM_002081GPC11
NM_020163SEMA3G1
NM_0010986241
NM_033290MID11
NM_000381MID11
NM_024513FYCO11
NM_173667FLJ375431
NM_014757MAML11
XM_001126853MAML11
NM_017791C14orf581
NM_017514PLXNA31
NM_014388C1orf1071
NM_002111HD1
NM_020845PITPNM21
NM_198458ZNF4971
NM_003708RDH161
NM_004227PSCD31
NM_001908CTSB1
NM_147781CTSB1
NM_147783CTSB1
NM_147780CTSB1
NM_147782CTSB1
NM_015056RRP1B1
NM_005018PDCD11
NM_001040715LOC6533191
NM_000210ITGA61
NM_001079818ITGA61
XM_934649C1orf341
XM_945958C1orf341
NM_001005404YPEL21
NM_032123KIRREL21
NM_199180KIRREL21
NM_199179KIRREL21
NM_001927DES1
NM_001969EIF51
NM_183004EIF51
NM_001080379PACRG1
NM_001080378PACRG1
NM_152410PACRG1
NM_030911CDADC11
NM_032496ARHGAP91
NM_001080157ARHGAP91
NM_001080156ARHGAP91
NM_182616C15orf381
NM_014049ACAD91
NM_001077418FLJ221671
NM_001077416FLJ221671
NM_001077419FLJ221671
NM_032735BEST31
NM_152439BEST31
NM_015318ARHGEF181
NM_016305SS18L21
NM_000017ACADS1
NM_022473ZFP1061
NM_007208MRPL31
NM_001042498SLC35A21
NM_152699SENP51
NM_015654NAT91
NM_020145SH3GLB21
NM_152372MYOM31
NM_004475FLOT21
NM_017813IMPAD11
XM_941540FLJ900861
XM_371820FLJ900861
NM_015630EPC21
NM_032738FCRLA1
NM_207311CCDC641
NM_001986ETV41
NM_001079675ETV41
NM_020772NUFIP21
NM_005578LPP1
NM_015202KIAA05561
NM_033449FCHSD11
NM_139319SLC17A81
NM_020672S100A141
NM_003861WDR221
NM_032580HES71
NM_015270ADCY61
NM_020983ADCY61
NM_003216TEF1
NM_002576PAK11
NM_139279MCFD21
NM_020993BCL7A1
NM_001024808BCL7A1
NM_080725SRXN11
NM_017798YTHDF11
XM_936833LOC6441961
XM_927389LOC6441961
NM_014160MKRN21
NM_014665LRRC141
NM_001012509SLC45A21
NM_015516TSKU1
NM_005515HLXB91
NM_015035ZHX31
NM_207119LRRC201
NM_018239LRRC201
NM_018205LRRC201
NM_001042682RERE1
NM_012102RERE1
NM_001042681RERE1
NM_003559PIP5K2B1
NM_019884GSK3A1
NM_006772SYNGAP11
NM_052876BTBD14B1
NM_032838ZNF5661
NM_001029863C6orf1201
NM_000801FKBP1A1
NM_015254KIF13B1
NM_006482DYRK21
NM_003583DYRK21
NM_022772EPS8L21
XM_001129221EPS8L21
NM_000330RS11
NM_033262SLC8A31
NM_183002SLC8A31
NM_058240SLC8A31
NM_182936SLC8A31
NM_182932SLC8A31
XM_377073LOC3764751
NM_024028PCYOX1L1
NM_152854CD401
NM_001250CD401
NM_198406PAQR61
NM_024897PAQR61
NM_001011718XKR71
NM_198441FLJ402961
XM_001132957LOC7292401
XM_001132952LOC7292331
XM_001132961LOC7292461
XM_001132965LOC7292501
NM_020342SLC39A101
NM_080671KCNE41
NM_000136FANCC1
NM_017429BCMO11
NM_003035STIL1
NM_001048166STIL1
NM_021809TGIF21
NM_176871PDLIM21
NM_003382VIPR21
NM_017563IL17RD1
NM_001080973IL17RD1
NM_175852TXLNA1
NM_001024599HIST2H2BF1
NM_001026213CYP11B11
NM_000497CYP11B11
NM_000778CYP4A111
NM_018072HEATR11
NM_018129PNPO1
NM_0010988191
NM_0010988181
NM_000923PDE4C1
NM_006011ST8SIA21
NM_012458TIMM131
NM_025222TMEM1131
XM_944029LOC6479791
NM_014969WDR471
NM_004522KIF5C1
NM_004566PFKFB31
NM_032899FAM83A1
NM_003485GPR681
NM_013389NPC1L11
NM_0011016481
NM_0152071
NM_032440LCOR1
NM_015852ZNF1171
NM_001029880SFMBT21
NM_002595PCTK21
NM_015313ARHGEF121
NM_012448STAT5B1
NM_030579CYB5B1
NM_015541LRIG11
NM_004772C5orf131
XM_942191LOC6446861
NM_003724JRK1
NM_001077527JRK1
NM_052962IL22RA21
NM_181309IL22RA21
NM_181310IL22RA21
NM_031243HNRPA2B11
NM_002137HNRPA2B11
NM_000926PGR1
NM_032840SPRYD31
NM_024639ZNF322A1
NM_020981B3GALT11
NM_144571CNOT6L1
NM_001024401SBK11
NM_030978ARPC5L1
NM_001039574KCNC41
NM_004978KCNC41
NM_006313USP151
NM_022091ASCC31
NM_014830ZBTB391
NM_130807MOBKL2A1
NM_001116ADCY91
NM_0152761
NM_0178921
NM_024102WDR771
NM_001018111PODXL1
NM_005397PODXL1
NM_003298NR2C21
NM_003637ITGA101
NM_053282SH2D1B1
NM_017852NLRP21
NM_002351SH2D1A1
NM_031409CCR61
NM_004367CCR61
NM_174918C19orf591
NM_015545PTCD11
NM_002213ITGB51
NM_206595ESRRG1
NM_001438ESRRG1
NM_206594ESRRG1
NM_0010994361
NM_020776KIAA13281
NM_022480KLHL251
NM_014233UBTF1
NM_001076683UBTF1
NM_001076684UBTF1
NM_003968UBE1C1
NM_198195UBE1C1
NM_003070SMARCA21
NM_139045SMARCA21
NM_003362UNG1
NM_080911UNG1
NM_001400EDG11
NM_019008SMCR7L1
NM_032336GINS41
NM_001083112GPD21
NM_000408GPD21
NM_144626TMEM1251
NM_012257HBP11
NM_030899ZNF3231
NM_145909ZNF3231
NM_203329CD591
NM_203331CD591
NM_203330CD591
NM_000611CD591
NM_022749RAI161
NM_024836ZNF6721
XM_001129932LOC6453321
NM_080706TRPV11
NM_018727TRPV11
NM_080704TRPV11
NM_080705TRPV11
NM_024007EBF11
NM_001031684SFRS71
XM_001134338LOC7322421
XM_001126914LOC7303941
XM_001126890LOC7303941
XM_001130168LOC7283401
XM_001130198LOC7283401
XM_001130208LOC7283401
XM_001126931LOC7303941
XM_931515TNRC91
XM_941030TNRC91
NM_012215MGEA51
NM_0010992811
NM_0010992801
NM_152263TPM31
NM_006397RNASEH2A1
NM_0010994551
NM_018340FLJ111511
NM_171825CAMK2A1
NM_015981CAMK2A1
NM_016235GPRC5B1
NM_006591POLD31
NM_003048SLC9A21
NM_012398PIP5K1C1
NM_024753TTC21B1
NM_001417EIF4B1
NM_004747DLG51
NM_015332NUDCD31
NM_004441EPHB11
NM_007275TUSC21
NM_138621BCL2L111
NM_006538BCL2L111
NM_001800CDKN2D1
NM_079421CDKN2D1
NM_173214NFAT51
NM_006599NFAT51
NM_138714NFAT51
NM_0011131781
NM_138713NFAT51
NM_0011001591
NM_133371MYOZ31
NM_001080497MEGF91
XM_936860MEGF91
XM_943029LOC3890431
XM_374012LOC3890431
NM_203459CAMSAP1L11
NM_198461LONRF21
NM_003045SLC7A11
NM_181489ZNF4451
NM_213566DFFA1
NM_133330WHSC11
NM_001042424WHSC11
NM_133331WHSC11
NM_133335WHSC11
NM_001457FLNB1
NM_023016ANKRD571
NM_016340RAPGEF61
NM_001024948FNBP1L1
NM_017737FNBP1L1
NM_005656TMPRSS21
NM_178438LCE5A1
NM_022845CBFB1
NM_001755CBFB1
NM_080650ATPBD41
NM_016079VPS241
NM_001005753VPS241
NM_016127TMEM661
NM_005124NUP1531
NM_033285TP53INP11
NM_024884L2HGDH1
NM_133279FCAR1
NM_006134TMEM50B1
NM_152380TBX151
NM_015137KIAA01431
NM_021064HIST1H2AG1
XM_939259ZNF4691
XM_001125745ZNF4691
NM_152407GRPEL21
NM_001204BMPR21
NM_017411SMN21
NM_022875SMN21
NM_022877SMN21
NM_022876SMN21
NM_000344SMN11
NM_022874SMN11
NM_014048MKL21
NM_012258HEY11
NM_001040708HEY11
NM_006996SLC19A21
NM_0011112831
NM_000618IGF11
NM_0011112841
NM_001804CDX11
NM_022733SMAP1L1
NM_004274AKAP61
NM_001387DPYSL31
NM_001042574CRTC31
NM_022769CRTC31
NM_194282LIN541
NM_016542MST41
NM_001042452MST41
NM_001042453MST41
NM_001011645AR1
NM_000044AR1
NM_173698RP1-32F7.21
NM_002906RDX1
NM_004448ERBB21
NM_001005862ERBB21
XM_001134096LOC7299641
XM_001134032LOC7321421
NM_018319TDP11
NM_001008744TDP11
NM_001826CKS1B1
NM_130446KLHL61
NM_001939DRP21
NM_003685KHSRP1
NM_033227TRIM231
NM_001656TRIM231
NM_033228TRIM231
NM_006965ZNF241
NM_001003698RREB11
NM_001003699RREB11
NM_002955RREB11
NM_024408NOTCH21
XM_001133349NOTCH21
NM_020820PREX11
NM_024861FLJ226711
NM_0010854371
NM_031486ZNF4841
NM_001007101ZNF4841
NM_198904GABRG21
NM_002126HLF1
NM_175875SIX51
NM_001001701LOC4011521
NM_001395DUSP91
NM_001039547GK51
NM_005458GABBR21
NM_030571NDFIP11
NM_003900SQSTM11
NM_000533PLP11
NM_199478PLP11
NM_005491CXorf61
NM_001987ETV61
XM_939296MGA1
NM_001080541MGA1
XM_932727MGA1
XM_944092MGA1
NM_001024688NBN1
NM_002485NBN1
NM_000705ATP4B1
XM_001131702LOC1527421
XM_001128848LOC1527421
NM_001004304ZNF7401
NM_145263SPATA181
NM_002742PRKD11
NM_002092GRSF11
NM_0010984771
NM_1735951
NM_0011055431
NM_001760CCND31
NM_001044SLC6A31
NM_182503DEADC11
NM_006315PCGF31
NM_024726IQCA1
NM_033419PERLD11
NM_000831GRIK31
NM_152224PPEF11
NM_152226PPEF11
NM_006240PPEF11
NM_153712TTL1
NM_198560LHFPL41
NM_001806CEBPG1
NM_007274ACOT71
NM_181865ACOT71
NM_181866ACOT71
NM_181864ACOT71
NM_016577RAB6B1
NM_024761MOBKL2B1
NM_207309UAP1L11
NM_004393DAG11
NM_173644C20orf1971
NM_015892GALNAC4S-6ST1
NM_002032FTH11
NM_014686KIAA03551
NM_016316REV11
NM_001037872REV11
NM_005366MAGEA111
NM_001011544MAGEA111
NM_000355TCN21
NM_030820COL21A11
NM_006371CRTAP1
NM_004115FGF141
NM_175929FGF141
NM_201266NRP21
NM_003872NRP21
NM_201279NRP21
NM_153810C10orf461
NM_003194TBP1
XM_001130815LOC6478591
XM_001127102LOC6478591
NM_032866CGNL11
NM_001001734ATP1A41
NM_144699ATP1A41
NM_001374DNASE1L21
XM_497648LOC4418691
XM_001126121LOC4418691
NM_016424CROP1
NM_004748CCPG11
NM_020739CCPG11
NM_012405ICMT1
NM_001761CCNF1
NM_152233SNX61
NM_021249SNX61
NM_014431KIAA12741
NM_022716PRRX11
NM_006902PRRX11
NM_006047RBM121
NM_152838RBM121
NM_024833ZNF6711
NM_001005463EBF31
NM_018036C14orf1031
NM_017953C1orf1811
NM_015141GPD1L1
NM_004730ETF11
NM_207366FLJ440601
NM_005796NUTF21
NM_001018057DKK31
NM_013253DKK31
NM_015881DKK31
NM_004807HS6ST11
XM_001132928LOC7289691
NM_153045C9orf911
NM_007117TRH1
NM_020116FSTL51
NM_025179PLXNA21
NM_001080543C19orf291
NM_021216ZNF711
NM_178582HM131
NM_006936SUMO31
NM_022489C14orf1731
NM_001031714C14orf1731
NM_013337TIMM221
NM_000702ATP1A21
NM_138468ICA1L1
NM_080741NEU41
NM_001077394DPH51
NM_001077395DPH51
NM_015958DPH51
XM_927706LOC6445911
NM_145167PIGM1
NM_000332ATXN11
NM_016131RAB101
NM_002868RAB5B1
NM_001002860BTBD71
NM_212481ARID5A1
NM_017768LRRC401
NM_006239PPEF21
NM_199324OTUD41
NM_0011026531
NM_001010922C1orf1781
NM_001012393OPCML1
NM_002545OPCML1
NM_002519NPAT1
NM_173666DTWD21
NM_030980ISG20L21
NM_001033518WIPI21
NM_001033519WIPI21
NM_015610WIPI21
NM_001033520WIPI21
NM_016003WIPI21
NM_014911AAK11
NM_032933C18orf451
NM_182705FAM101B1
NM_004091E2F21
NM_022748TNS31
NM_015282CLASP11
NM_015150RFTN11
NM_017637BNC21
NM_001044387ZNF5571
NM_024341ZNF5571
NM_001044388ZNF5571
NM_002855PVRL11
NM_004507HUS11
NM_130847AMOTL11
XM_378661C17orf511
XM_944416C17orf511
NM_006823PKIA1
NM_181839PKIA1
NM_001040157KIAA17121
NM_004907IER21
NM_004598SPOCK11
NM_022154SLC39A81
NM_002581PAPPA1
NM_016021UBE2J11
NM_018229C14orf1081
XM_934287LOC1448171
XM_945225LOC1448171
XM_944900LOC6437701
XM_931792LOC6437701
NM_198513PHF20L11
NM_004734DCLK11
NM_001018000KIAA10261
NM_001017999KIAA10261
NM_001018001KIAA10261
NM_015209KIAA10261
NM_152391PQLC31
NM_006252PRKAA21
NM_173515CNKSR31
NM_002045GAP431
NM_001420ELAVL31
NM_032281ELAVL31
NM_000448RAG11
NM_002577PAK21
NM_007067MYST21
NM_0010988161
NM_020394ZNF6951
NM_017415KLHL31
XM_001129694LOC7288681
NM_000719CACNA1C1
NM_017982SUSD41
NM_004575POU4F21
NM_024733ZNF6651
NM_001037165FOXK11
NM_006930SKP1A1
NM_001005747CACNB41
NM_000726CACNB41
NM_001005746CACNB41
NM_014912CPEB31
NM_178013PRIMA11
NM_020919ALS21
NM_013261PPARGC1A1
NM_021215C20orf771
NM_0010988321
NM_032837FAM104A1
NM_001040875GDAP11
NM_018972GDAP11
NM_002473MYH91
NM_006496GNAI31
NM_005552KLC11
XM_001127604NFATC2IP1
NM_032815NFATC2IP1
NM_080592C2orf281
NM_016085C2orf281
NM_032867MICALCL1
NM_001649SHROOM21
NM_183395NLRP31
NM_004895NLRP31
NM_001079821NLRP31
NM_005873RGS191
NM_001039467RGS191
NM_006321ARIH21
NM_033267IRX21
XM_001132002LOC7321481
XM_001129370LOC7291221
NM_030787CFHR51
NM_000161GCH11
NM_014809KIAA03191
NM_001001709FLJ455371
XM_939981LOC6469761
XM_929947LOC6469761
NM_020437ASPHD21
NM_024692CLIP41
NM_003934FUBP31
XM_001125825FUBP31
XM_001128545FUBP31
XM_001134350LOC7301811
XM_001133934LOC7318241
NM_174902LDLRAD31
NM_001001665FLJ160081
NM_145244DDIT4L1
NM_018486HDAC81
NM_198849LOC2835141
NM_030641APOL61
NM_138972BACE11
NM_012104BACE11
NM_138973BACE11
NM_138971BACE11
NM_012071COMMD31
NM_015247CYLD1
NM_001042412CYLD1
NM_001042355CYLD1
NM_182970RIMS41
NM_033274ADAM191
XM_939919LOC6508321
NM_002756MAP2K31
NM_145109MAP2K31
NM_178554KY1
NM_001083621ZBTB401
NM_014870ZBTB401

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317