Predicted Off-targets for siRNA "aagacugaugaagcucagccu" Using siRNA SpecificityServer

Specificity Server [Result page v1.0]


SpecificityServer - An siRNA design program for determining siRNA specificity

Automatic recommendation
OK - siRNA is specific for both sense and antisense (guide) strands

29 hits were found for GACUGAUGAAGCUCAGCCU (11 guide strand hits and 18 sense strand hits.)

Hits to Guide strand

AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_015914 TXNDC11 1942 1960 cACUGAUGAAGCUCAcCCU71 2 14 c false   <90%   3047
NM_173642 FAM80A 549 567 GAuUGAUGAAGCUgAGCCc55 3 10 c false   <90%   1525
NM_139289 AKAP4 2205 2223 cugUGAUGAAGCUCuGCCU42 4 11 c false   <90%   2867
NM_003886 AKAP4 2232 2250 cugUGAUGAAGCUCuGCCU42 4 11 c false   <90%   2881
NM_005778 RBM5 1426 1444 GACUGAgGAAGCaCAGCCU23 2 6   false   <90%   3135
NM_173549 C8orf47 583 601 aAaUGcUGAAGCUCAGCCU15 3 13 bc false   <90%   1550
XR_017070 LOC646083 379 397 GACUGAUGuAGCUCAGggg8 4 8 c false   <90%   1894
XR_018644 LOC646083 379 397 GACUGAUGuAGCUCAGggg8 4 8 c false   <90%   2002
XM_001132454 SLCO3A1 1228 1246 uggUGAaGAAGCUCAGCCU0 4 12 bc false   <90%   2522
NM_013272 SLCO3A1 1419 1437 uggUGAaGAAGCUCAGCCU0 4 12 bc false   <90%   2740
XM_001132480 SLCO3A1 1151 1169 uggUGAaGAAGCUCAGCCU0 4 12 bc false   <90%   4829


Hits to Sense strand



















AccessionGeneStartEndDetails of mismatchesSpec.
Score
MismatchesContiguousJackson style
specificity
Hits similar
gene
HSP
Score
HSP %
Identity
HSP lengthGene Length
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
NM_153045 C9orf91 1091 1109 AGaCUGAGCUUCAUCAGcu72 3 14 c false   <90%   3699
NM_014858 TMCC2 2159 2177 uGaCUGAGCUUCAUCAGaa70 4 14 c false   <90%   3792
NM_001045 SLC6A4 516 534 uGGCUGAGCUUCAUCAagg66 4 15 ac false   <90%   2775
NM_018943 TUBA8 1591 1609 AcaCUGAGCUUCAUCAGgC66 3 14 c false   <90%   2018
XM_001132853 C3orf49 867 885 AuGCUGAGCUUCAaCAGUg64 3 11 c false   <90%   1045
XM_001132201 C3orf49 867 885 AuGCUGAGCUUCAaCAGUg64 3 11 c false   <90%   1045
NM_024805 C18orf22 709 727 uaGCUGAGCUUgAUCAGUu47 4 9   false   <90%   1419
XM_934796 LOC653566 335 353 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1202
XM_944485 LOC653566 335 353 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1202
NM_014752 SPCS2 515 533 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1370
XM_934797 LOC653566 547 565 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1414
XM_944490 LOC653566 547 565 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1414
NM_001080536 LOC653566 564 582 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1431
XM_940181 LOC653566 564 582 AaGCUGAcCUUCAUCAGUg21 3 10 bc false   <90%   1431
NM_001040432 ZCWPW2 384 402 AGuCUcAGCUUCAUCAGUg12 3 12 bc false   <90%   1752
XM_001127975 FAM66C 642 660 AGGaUGAaCUUCAUCAGUa-3 3 10 bc false   <90%   914
NM_024993 LRRTM4 39 57 gcuCUGAGCaUCAUCAGUC-15 4 9 bc false   <90%   3616
NM_014747 RIMS3 418 436 AGGCUcAGaUUCAUCAGUu-28 3 9 bc false   <90%   7233


3 prime UTR Seed matches

Hits to same gene : 0
Hits to other genes : 1431
View matched accessions

3 prime seed match details

AccessionGene nameHits to this gene
NM_005596NFIB3
NM_015471NSL13
NM_001042549NSL13
NM_173214NFAT53
NM_006599NFAT53
NM_138714NFAT53
NM_0011131783
NM_138713NFAT53
NM_004738VAPB3
NM_013989DIO23
NM_001007023DIO23
NM_000793DIO23
NM_020782KLHDC52
NM_006241PPP1R22
NM_0209082
NM_005078TLE32
NM_0011051922
NM_145808MTPN2
NM_014309RBM92
NM_001082576RBM92
NM_001082577RBM92
NM_001031695RBM92
NM_001082578RBM92
NM_001082579RBM92
NM_001918DBT2
NM_001009554MFAP3L2
NM_021647MFAP3L2
NM_014423AFF42
NM_1735692
NM_033133CNP2
NM_014388C1orf1072
NM_024512LRRC22
NM_014141CNTNAP22
NM_018373SYNJ2BP2
XM_379078FLJ414812
XM_944401FLJ414812
NM_005472KCNE32
NM_020774MIB12
NM_004666VNN12
NM_018638ETNK12
NM_006301MAP3K122
NM_006265RAD212
NM_198461LONRF22
NM_172037RDH102
XM_001129796LOC6455132
NM_014222NDUFA82
NM_153711FAM26E2
NM_173632ZNF7762
NM_207422FLJ446352
NM_0011026082
NM_173598KSR22
NM_016026RDH112
NM_057175NARG12
NM_005822DSCR1L12
NM_005068SIM12
NM_000555DCX2
NM_178152DCX2
NM_178153DCX2
NM_178151DCX2
NM_014381MLH32
NM_001040108MLH32
NM_001008539SLC7A22
NM_003046SLC7A22
NM_024779PIP5K2C2
NM_016052RRP152
NM_145278C1orf1502
NM_004727SLC24A12
NM_005036PPARA2
NM_001001928PPARA2
NM_003921BCL102
NM_006517SLC16A22
NM_182527CABP72
NM_181846ZSCAN222
NM_005759ABI22
XM_001126750ABI22
NM_001030060SAMD52
NM_001077691ALG92
NM_001077692ALG92
NM_024740ALG92
NM_001077690ALG92
NM_007175ERLIN22
NM_174953ATP2A32
NM_174956ATP2A32
NM_174954ATP2A32
NM_174957ATP2A32
NM_005173ATP2A32
NM_016204GDF22
NM_005828WDR682
NM_032023RASSF42
NM_014155ZBTB442
NM_0011004172
NM_175748C14orf1302
NM_0330262
NM_032147USP442
NM_001042403USP442
NM_001010851ZNF7662
NM_014947FOXJ32
NM_033225CSMD12
NM_004748CCPG12
NM_020739CCPG12
NM_018665DDX432
NM_144498OSBPL22
NM_014835OSBPL22
NM_199162ADPRHL11
NM_015948SLC35B31
NM_002033FUT41
NM_152666PLD51
NM_0010994131
NM_0010994121
NM_006766MYST31
NM_006054RTN31
NM_201429RTN31
NM_201428RTN31
NM_201430RTN31
NM_0010853681
NM_001009960ZNF6551
NM_0010839561
NM_138494ZNF6551
NM_015989CSAD1
NM_020817KIAA14071
NM_006275SFRS61
NM_017705PAQR51
NM_0011045541
NM_006654FRS21
NM_001042555FRS21
NM_173582PGM2L11
NM_001025073C3orf171
NM_015412C3orf171
NM_001025072C3orf171
NM_003272GPR137B1
NM_017775TTC191
NM_145261DNAJC191
NM_020468SNX141
NM_153816SNX141
NM_022757CCDC141
NM_015289VPS391
NM_001006657WDR351
NM_020779WDR351
NM_183397PXMP41
NM_007238PXMP41
NM_001546ID41
NM_001017408GOPC1
NM_020399GOPC1
NM_032042C5orf211
NM_152590IFLTD11
NM_173533TDRD51
NM_020726NLN1
NM_194282LIN541
NM_0011031471
NM_0011031481
NM_0011031461
NM_015575TNRC151
NM_003633ENC11
NM_001031689PLAA1
NM_004253PLAA1
NM_018092NETO21
NM_001040020FAM3C1
NM_014888FAM3C1
NM_020940KIAA16001
NM_001004342TRIM671
NM_024813C1orf821
NM_001661ARL4D1
NM_153487MDGA11
NM_001188BAK11
NM_000405GM2A1
NM_018128TSR11
NM_144781PDCD21
NM_030920ANP32E1
NM_0010996911
NM_003236TGFA1
NM_005495SLC17A41
NM_0010988161
NM_032818C9orf1001
NM_019027FLJ202731
NM_0010986341
NM_003017SFRS31
NM_203447DOCK81
NM_000084CLCN51
NM_001415EIF2S31
NM_004124GMFB1
NM_021629GNB41
NM_002242KCNJ131
NM_194434VAPA1
NM_003574VAPA1
NM_207339PAGE21
NM_001015038PAGE2B1
NM_002736PRKAR2B1
NM_005191CD801
NM_001969EIF51
NM_183004EIF51
NM_006497HIC11
NM_0010982021
NM_006927ST3GAL21
XM_927936LOC6448411
XM_935685LOC6419331
XM_938176LOC6448411
NM_024596MCPH11
NM_018242FLJ108471
NM_015840ADAR1
NM_015841ADAR1
NM_001025107ADAR1
NM_001111ADAR1
NM_018566YOD11
NM_004707ATG121
NM_002349LY751
NM_152678FAM116A1
XM_001132771FAM116A1
NM_133445GRIN3A1
NM_0011111131
NM_005339HIP21
NM_0011111121
NM_000235LIPA1
NM_001025369VEGFA1
NM_001025370VEGFA1
NM_001025368VEGFA1
NM_001025366VEGFA1
NM_001025367VEGFA1
NM_003376VEGFA1
NM_004626WNT111
NM_004844SH3BP51
NM_001018009SH3BP51
NM_004850ROCK21
NM_006815TMED21
NM_052943FAM46B1
NM_017644KLHL241
NM_001273CHD41
NM_000181GUSB1
NM_183386ACOT81
NM_005469ACOT81
NM_001776ENTPD11
NM_0010981751
NM_031482ATG101
NM_019087ARL151
NM_0010992201
NM_133499SYN11
NM_006393NEBL1
NM_012328DNAJB91
NM_032900ARHGAP191
NM_144667FLJ328941
NM_020954KIAA16181
NM_018303EXOC21
NM_199053FLJ127161
NM_021942FLJ127161
NM_020871LRCH21
NM_0011024061
NM_025144ALPK11
NM_198081SCML41
NM_030937CCNL21
NM_001039577CCNL21
XM_001126014LOC7278771
XM_001125845LOC7303911
XM_001127758LOC7285551
NM_004442EPHB21
NM_017449EPHB21
NM_014521SH3BP41
NM_145250RNASE111
NM_025054VCPIP11
NM_182749N6AMT11
NM_013240N6AMT11
NM_198715PTGER31
XM_928464LOC1465171
NM_201437TCEA11
NM_006756TCEA11
NM_207009FAM45A1
XM_001130983LOC7318321
NM_018472FAM45B1
NM_015679TRUB21
NM_025188TRIM451
NM_001627ALCAM1
NM_021912GABRB31
NM_000814GABRB31
NM_207044ENSA1
NM_207043ENSA1
NM_207047ENSA1
XM_939123LOC4014971
XM_376822LOC4014971
NM_006924SFRS11
NM_001078166SFRS11
NM_198485FAM79B1
NM_006212PFKFB21
NM_022121PERP1
NM_025099C17orf681
NM_012158FBXL31
NM_001003702FLJ436921
XM_941810LOC2840231
XM_929835LOC2840231
NM_023000ARID4A1
NM_023001ARID4A1
NM_002892ARID4A1
NM_015163TRIM91
XM_001130009LOC7315451
XM_001129842LOC7292851
NM_014373GPR1601
NM_001024680LOC5542511
NM_005668ST8SIA41
NM_015076CDC2L61
NM_173469UBE2Q21
NM_017412FZD31
NM_001014812FAM96A1
NM_001440EXTL31
NM_199487C20orf441
NM_018244C20orf441
NM_153365TAPT11
NM_054022GOSR21
NM_004287GOSR21
NM_001008408RBM331
NM_053043PRR81
NM_003772JRKL1
NM_024567HMBOX11
NM_198686RAB151
NM_005156ROD11
NM_203395IYD1
NM_178509STXBP41
NM_004157PRKAR2A1
NM_006372SYNCRIP1
NM_198274SMYD11
NM_152275TTC30A1
NM_014729TOX1
NM_014899RHOBTB31
NM_0010996661
NM_015375RIPK51
NM_199462RIPK51
NM_032717MAG11
NM_016006ABHD51
NM_015419MXRA51
NM_020918GPAM1
NM_012096APPL11
NM_000724CACNB21
NM_201596CACNB21
NM_201571CACNB21
NM_201593CACNB21
NM_201590CACNB21
NM_201572CACNB21
NM_201597CACNB21
NM_201570CACNB21
NM_024670SUV39H21
NM_080760DACH11
NM_080759DACH11
NM_004392DACH11
NM_015346ZFYVE261
NM_004049BCL2A11
NM_031904FKSG441
NM_198682GYPE1
NM_015432PLEKHG41
XM_001133760ZNF5191
NM_024702ZNF7501
NM_001030001RPS291
NM_007137ZNF811
NM_018700TRIM361
NM_012333MYCBP1
NM_021925C2orf431
XM_939366LOC2835851
XM_375099LOC2835851
NM_002497NEK21
NM_012125CHRM51
NM_013235RNASEN1
NM_0011004121
NM_032320BTBD101
NM_018453EAPP1
NM_004283RAB3D1
NM_020772NUFIP21
NM_052862RCSD11
NM_018400SCN3B1
NM_001040151SCN3B1
XM_930505LOC6456761
XM_941520LOC6456761
NM_016577RAB6B1
NM_002612PDK41
NM_020799STAMBPL11
XM_001133708LOC7297381
XM_001133805LOC7320461
NM_175861TMTC11
NM_005813PRKD31
NM_005665EVI51
NM_001610ACP21
NM_013252CLEC5A1
NM_0209101
NM_016535ZNF5811
XM_937000LOC1476451
XM_085831LOC1476451
NM_014554SENP11
NM_014035SNX241
NM_173492PIP5KL11
NM_000961PTGIS1
NM_001038707CDC42SE11
NM_020239CDC42SE11
NM_0010996941
NM_013255MKLN11
NM_020200PRTFDC11
NM_003412ZIC11
NM_016464TMEM1381
NM_013348KCNJ141
NM_170720KCNJ141
NM_001010879ZIK11
NM_002040GABPA1
NM_025136OPA31
NM_000682ADRA2B1
NM_019044CCDC931
NM_004711SYNGR11
NM_003430ZNF911
NM_004286GTPBP11
NM_212559XKRX1
NM_007021C10orf101
NM_145010C10orf631
NM_024969FAM130A21
NM_001039661TIRAP1
NM_006310NPEPPS1
XM_001132288LOC7287161
XM_001134292LOC7322201
NM_005658TRAF11
NM_0010992891
NM_014636RALGPS11
NM_031467SLC4A91
NM_014376CYFIP21
NM_001037332CYFIP21
NM_001037333CYFIP21
NM_024761MOBKL2B1
NM_006425SLU71
NM_203412UBL4B1
NM_000844GRM71
NM_181874GRM71
NM_003246THBS11
NM_198990NAPE-PLD1
NM_005121THRAP11
NM_018361AGPAT51
NM_014246CELSR11
NM_005234NR2F61
NM_001080437SNED11
XM_940984SNED11
NM_0011001641
NM_0011001661
NM_014721PHACTR21
NM_0011001651
NM_001077654TNFAIP81
NM_014350TNFAIP81
NM_000918P4HB1
NM_017628KIAA15461
NM_145648SLC15A41
NM_016132MYEF21
NM_020348CNNM11
NM_022118RBM261
NM_001941DSC31
NM_024423DSC31
NM_138473SP11
NM_001007525NWD11
NM_001012393OPCML1
NM_002545OPCML1
NM_001024668LETMD11
NM_015416LETMD11
NM_019084CCNJ1
NM_015047KIAA00901
NM_000605IFNA21
NM_003269NR2E11
NM_018374TMEM106B1
NM_032300TCHP1
NM_001029858SLC35F11
NM_0011055731
NM_012400PLA2G2D1
NM_032447FBN31
NM_006371CRTAP1
NM_003559PIP5K2B1
NM_032683FKSG241
NM_001305CLDN41
NM_030925CAB39L1
NM_001079670CAB39L1
NM_017621ALKBH41
NM_004955SLC29A11
NM_001078176SLC29A11
NM_001078175SLC29A11
NM_001078177SLC29A11
NM_001078174SLC29A11
NM_003177SYK1
NM_033397KIAA17541
NM_198849LOC2835141
NM_004254SLC22A81
NM_020150SAR1A1
NM_031964KRTAP17-11
NM_004227PSCD31
NM_031488L3MBTL21
NM_138972BACE11
NM_012104BACE11
NM_138973BACE11
NM_138971BACE11
XM_001125098LOC7304171
NM_001039479KIAA03171
NM_004491GRLF11
NM_006076HRBL1
NM_005840SPRY31
NM_057170GIT21
NM_057169GIT21
NM_014776GIT21
NM_133274FCAR1
NM_133271FCAR1
NM_002000FCAR1
NM_133273FCAR1
NM_133277FCAR1
NM_133269FCAR1
NM_133278FCAR1
NM_133272FCAR1
NM_152777C14orf481
NM_016022APH1A1
NM_001013642LOC3886101
NM_006553SLMO11
NM_017712PGPEP11
NM_020207C9orf1021
NM_032793MFSD21
NM_0010988331
NM_0202181
NM_032983CASP21
NM_198087ZNF2001
NM_198088ZNF2001
NM_003454ZNF2001
NM_145872ASB41
NM_017798YTHDF11
NM_001167BIRC41
NM_004907IER21
NM_005578LPP1
NM_033107GTPBP101
NM_001042717GTPBP101
NM_032836FIZ11
NM_134445CD99L21
NM_134446CD99L21
NM_031462CD99L21
NM_001010974BCAS41
NM_198799BCAS41
NM_017843BCAS41
NM_002811PSMD71
NM_014058TMPRSS11E1
NM_0010996621
NM_019067GNL3L1
NM_002547OPHN11
NM_001025780FAM108B11
NM_1785611
NM_203355CTAGE51
NM_203354CTAGE51
NM_203356CTAGE51
NM_005930CTAGE51
NM_172241CTAGE11
NM_030568C6orf1481
NM_031469SH3BGRL21
NM_002460IRF41
NM_1829691
NM_015094HIC21
NM_001083620GRIA21
NM_000826GRIA21
NM_001083619GRIA21
NM_000851GSTM51
NM_005546ITK1
NM_018444PPM2C1
NM_000195HPS11
NM_000628IL10RB1
NM_001017440CALN11
NM_031468CALN11
NM_133334WHSC11
NM_018206VPS351
NM_176823S100A7A1
NM_001414EIF2B11
NM_004487GOLGB11
NM_033505SELI1
NM_134265WSB11
NM_015626WSB11
NM_021783EDA2R1
NM_017547FOXRED11
NM_001077663URG41
NM_017920URG41
NM_001077664URG41
NM_183387EML51
NM_018992KCTD51
NM_015328KIAA08281
NM_020784KIAA13441
NM_006330LYPLA11
NM_006624ZMYND111
NM_016529ATP8A21
NM_022496ACTR61
NM_007054KIF3A1
NM_022716PRRX11
NM_006902PRRX11
NM_172071RC3H11
NM_022067C14orf1331
NM_003262TLOC11
NM_024645ZMAT41
NM_014612FAM120A1
NM_020806GPHN1
NM_001024218GPHN1
NM_024557RIC31
NM_020473PIGA1
NM_002641PIGA1
NM_006464TGOLN21
NM_014773KIAA01411
NM_002355M6PR1
NM_194329RNF381
NM_194328RNF381
NM_194330RNF381
NM_022781RNF381
NM_194332RNF381
NM_004617TM4SF41
NM_173552C3orf581
NM_003706PLA2G4C1
NM_018254RCOR31
NM_015087SPG201
NM_153232EID21
NM_006513SARS1
NM_138284IL17D1
NM_001037165FOXK11
NM_153620HOXA11
NM_005522HOXA11
NM_016462TMEM14C1
NM_024971TRPM31
NM_001007471TRPM31
NM_206947TRPM31
NM_206946TRPM31
NM_206944TRPM31
NM_206945TRPM31
NM_020952TRPM31
NM_175767IL6ST1
NM_004434EML11
NM_001008707EML11
NM_152551C6orf1511
NM_003899ARHGEF71
NM_003654CHST11
NM_080862SPSB41
NM_001766CD1D1
NM_003603SORBS21
NM_021069SORBS21
NM_004454ETV51
NM_015336ZDHHC171
NM_003149STAC1
NM_058166TRIM61
NM_001003818TRIM61
NM_002211ITGB11
NM_182485CPEB21
NM_182646CPEB21
NM_138959VANGL11
NM_207303ATRNL11
NM_145177DHRSX1
NM_138353LOC903791
NM_032351MRPL451
XM_001126219MRPL451
NM_007005TLE41
NM_000952PTAFR1
NM_014384ACAD81
NM_017600GOLGA2L11
NM_014758SNX191
NM_032423ZNF5281
NM_005558LAD11
NM_016308CMPK1
NM_005807PRG41
NM_002773PRSS81
NM_030800C15orf441
NM_015666GTPBP51
NM_0011031491
NM_018215FLJ107811
NM_144994ANKRD231
NM_018427RRN31
NM_016376ANKFY11
NM_130391PTPRD1
NM_130393PTPRD1
NM_130392PTPRD1
NM_002839PTPRD1
NM_001040712PTPRD1
NM_022845CBFB1
NM_001755CBFB1
NM_174902LDLRAD31
NM_022755IPPK1
NM_018364RSBN11
NM_145006SUSD31
NM_000038APC1
NM_020771HACE11
NM_032973PCDH11Y1
NM_032968PCDH11X1
NM_032969PCDH11X1
NM_024103SLC25A231
NM_031453FAM107B1
NM_001858COL19A11
NM_006367CAP11
NM_0011055301
NM_001937DPT1
NM_001002926TWISTNB1
NM_201264NRP21
NM_002487NDN1
NM_015836WARS21
NM_201263WARS21
NM_022051EGLN11
NM_174958ATP2A31
NM_174955ATP2A31
NM_0010854601
NM_0010854691
NM_0010854651
NM_0010854661
NM_0010854621
NM_0010854611
NM_0010854581
NM_0010854681
NM_0010854631
NM_0010854671
NM_001331CTNND11
NM_0010854591
NM_0010854641
NM_003224ARFRP11
NM_001009993LOC1300741
NM_022576PDC1
NM_002597PDC1
NM_001012761RGMB1
NM_001079843CASZ11
NM_198076FAM36A1
NM_014629ARHGEF101
NM_003613CILP1
NM_018947CYCS1
NM_003644GAS71
NM_201432GAS71
NM_201433GAS71
NM_153686LCORL1
NM_001010883FAM102B1
NM_023077C1orf1631
NM_001039SCNN1G1
NM_0011045461
NM_024302MMP281
NM_017944USP471
NM_002232KCNA31
NM_138286ZNF6811
NM_001008537KIAA20221
NM_145893A2BP11
XM_001134164ETV51
NM_139316AMPH1
NM_001635AMPH1
NM_001040455SIDT21
NM_001003716RECQL51
NM_015409EP4001
NM_001076778FAM107A1
NM_007177FAM107A1
NM_080607C20orf1021
NM_001003652SMAD21
NM_005901SMAD21
NM_198902TSPAN31
NM_005724TSPAN31
NM_013337TIMM221
NM_0208231
NM_005160ADRBK21
NM_024735FBXO311
NM_001039380C10orf251
NM_174900ZFP421
NM_153356TBC1D211
NM_080662PEX11G1
NM_031439SOX71
NM_058192RPUSD11
NM_006145DNAJB11
NM_016580PCDH121
NM_005151USP141
NM_001037334USP141
NM_023079UBE2Z1
NM_025092ATHL11
NM_181705LYRM71
NM_002737PRKCA1
NM_005177ATP6V0A11
NM_020216RNPEP1
NM_000902MME1
NM_007289MME1
NM_007288MME1
NM_007287MME1
NM_033446FAM125B1
NM_173511ALS2CR131
NM_020163SEMA3G1
NM_030891LRRC31
NM_016654GABPB21
NM_005254GABPB21
NM_001271CHD21
NM_001407CELSR31
NM_016217HECA1
NM_0011013871
NM_021645UTP14C1
NM_020809ARHGAP201
NM_0010981991
NM_005279GPR11
NM_014911AAK11
NM_002523NPTX21
NM_053005HCCA21
NM_020125SLAMF81
NM_181312TAZ1
NM_000116TAZ1
NM_181313TAZ1
NM_181311TAZ1
NM_020830WDFY11
NM_001013649LOC3889691
NM_020730DLG31
NM_021120DLG31
NM_020673RAB22A1
NM_005431XRCC21
NM_001009958ZNF6551
NM_0010853671
NM_024061ZNF6551
NM_0010853661
NM_003185TAF41
NM_0245621
NM_207315LOC1296071
NM_017665ZCCHC101
NM_033049MUC131
NM_207497FLJ437521
NM_182526C14orf831
NM_030626LRRC271
NM_201550LRRC101
NM_001079512LOC7807761
NM_001897CSPG41
XM_097977FAM59B1
XM_940578FAM59B1
NM_000461THRB1
NM_015962FCF11
NM_017911FAM118A1
NM_0011045951
NM_006708GLO11
NM_145754KIFC21
NM_001616ACVR2A1
NM_0150381
NM_198887NUP431
NM_0010992721
NM_152733BTBD91
NM_0528931
NM_004729ZBED11
NM_013999MEOX11
NM_004527MEOX11
NM_001040002MEOX11
NM_014644PDE4DIP1
XM_001126245LOC7278931
XM_001126231LOC7278931
XM_001132893LOC7288021
XM_001132890LOC7288021
XM_001132896LOC7288021
XM_001129001LOC7289891
XM_001133119LOC7289201
XM_001133122LOC7289201
XM_001133124LOC7289201
NM_178836LOC2011641
NM_001004439ITGA111
NM_021082SLC15A21
NM_139012MAPK141
NM_139014MAPK141
NM_001315MAPK141
NM_023067FOXL21
NM_002176IFNB11
NM_016733LIMK21
NM_005569LIMK21
NM_001012755MCART61
NM_007047BTN3A21
NM_016118NUB11
NM_148957TNFRSF191
NM_000388CASR1
NM_001002915IGFL21
NM_032800C1orf1981
NM_001040446MTMR121
NM_014448ARHGEF161
XM_375443LOC2841001
NM_003926MBD31
NM_006184NUCB11
NM_033512TSPYL51
NM_014497ZNF6381
NM_001014972ZNF6381
NM_198154TMEM951
XM_941026ING51
XM_001126273LOC7277731
NM_032329ING51
NM_005955MTF11
NM_020832ZNF6871
NM_002608PDGFB1
NM_033016PDGFB1
XM_001134215PDPR1
NM_017990PDPR1
NM_148977PANK11
NM_138316PANK11
NM_148978PANK11
NM_004753DHRS31
NM_018371ChGn1
NM_014021SSX2IP1
NM_005819STX61
NM_015680C2orf241
NM_020448NPAL31
NM_207406CCDC41
NM_016630SPG211
NM_015144ZCCHC141
NM_005201CCR81
NM_172164NASP1
NM_002482NASP1
NM_152298NASP1
NM_015271TRIM21
NM_022445TPK11
NM_001042482TPK11
NM_015257KIAA02861
NM_080681COL11A21
NM_080680COL11A21
NM_080679COL11A21
NM_003405YWHAH1
NM_000821GGCX1
NM_003458BSN1
NM_001080412ZBTB381
XM_001133510ZBTB381
NM_033251RPL131
NM_000977RPL131
NM_024762ZNF5521
NM_017746TEX101
NM_145756ZNF3961
XM_045290LOC1515791
XM_938633LOC1515791
NM_014670BZW11
NM_003112SP41
NM_003451ZNF1771
NM_022899ACTR81
XM_001130903LOC7318071
XM_001127077LOC7282871
NM_022497MRPS251
NM_001002914KCTD111
NM_080876DUSP191
NM_181723EFHA21
NM_130783TSPAN181
NM_001001420SMAD51
NM_001001419SMAD51
NM_005903SMAD51
XM_001129439LOC7308771
XM_001127905LOC7281961
NM_018346RSAD11
NM_006784WDR31
NM_181709FAM101A1
NM_078481CD971
NM_001025160CD971
NM_001784CD971
NM_003295TPT11
NM_198353KCTD81
NM_033224PURB1
NM_000429MAT1A1
NM_018067MAP7D11
NM_004091E2F21
XM_001128799MAP3K21
NM_001032363C1orf1511
NM_018440PAG11
NM_133496SLC30A71
NM_016424CROP1
NM_006107CROP1
NM_030792GDPD51
NM_018683ZNF3131
NM_182898CREB51
NM_004904CREB51
NM_001011666CREB51
NM_182899CREB51
NM_001007224GIMAP61
NM_024711GIMAP61
NM_016474C3orf191
NM_033514LIMS31
NM_020946DENND1A1
XM_938097DKFZP686C22811
XM_927469DKFZP686C22811
NM_0010986271
NM_032643IRF51
NM_002200IRF51
NM_0010986311
NM_0010986291
NM_0010986281
NM_0010986301
NM_021962ABR1
NM_001092ABR1
NM_007042RPP141
NM_0010987831
NM_145168HSPC1051
NM_001005267C15orf211
NM_001005268C15orf211
NM_001005266C15orf211
NM_001005269C15orf211
NM_173609C15orf211
NM_145313RASGEF1A1
NM_014271IL1RAPL11
NM_000314PTEN1
NM_207299PRG-31
NM_017753PRG-31
NM_207295MBNL11
NM_207293MBNL11
NM_207297MBNL11
NM_207296MBNL11
NM_207294MBNL11
NM_021038MBNL11
NM_207292MBNL11
NM_175569XG1
NM_052896CSMD21
NM_000230LEP1
NM_177454KIAA19461
NM_002042GABRR11
NM_017415KLHL31
NM_031476CRISPLD21
NM_005328HAS21
NM_000280PAX61
NM_001604PAX61
NM_022124CDH231
NM_001001549GRB101
NM_001001555GRB101
NM_001001550GRB101
NM_005311GRB101
NM_020205OTUD7B1
NM_0155661
NM_001078173FAM127C1
NM_201544LGALS81
NM_006499LGALS81
NM_201545LGALS81
NM_201543LGALS81
NM_000376VDR1
NM_001017535VDR1
NM_015282CLASP11
NM_001025100MBP1
NM_025027ZNF6061
XM_001125928LOC2838041
XM_001126277LOC6489131
NM_170665ATP2A21
NM_001681ATP2A21
NM_016608ARMCX11
NM_203301FBXO331
NM_001031711ERGIC11
NM_012345NUFIP11
NM_197964HSPC2681
NM_153271SH3PX31
NM_152391PQLC31
NM_018941CLN81
NM_020225STOX21
NM_012399PITPNB1
NM_001077196PDE11A1
NM_001077197PDE11A1
NM_016953PDE11A1
NM_0011055181
NM_017673C1orf261
NM_021136RTN11
NM_206852RTN11
NM_206857RTN11
NM_001025RPS231
NM_018420SLC22A151
NM_030756TCF7L21
NM_017982SUSD41
XM_001125875LOC7278181
NM_024789TMEM1801
NM_152751C10orf301
NM_025160WDR261
NM_001003800BICD21
NM_015250BICD21
NM_004840ARHGEF61
NM_018012KIF26B1
NM_012219MRAS1
NM_0010850491
NM_004052BNIP31
NM_004441EPHB11
NM_001001664LOC3397451
NM_001718BMP61
NM_017879ZNF4161
NM_018686CMAS1
NM_015726WDR42A1
NM_021045ZNF2481
NM_015686TMEM281
NM_015635GAPVD11
NM_001124ADM1
NM_004469FIGF1
NM_003948CDKL21
NM_000875IGF1R1
NM_004111FEN11
NM_004171SLC1A21
NM_020903USP291
NM_207118GTF2H51
XM_933935LOC6467781
XM_943239LOC6467781
NM_153369KIAA19191
NM_152756RICTOR1
NM_173167UNC45B1
NM_001033576UNC45B1
NM_001018050POLR3H1
NM_138338POLR3H1
NM_001018052POLR3H1
NM_024569MPZL11
NM_003953MPZL11
NM_003438ZNF1371
NM_205852CLEC12B1
NM_022473ZFP1061
NM_001035513SDHC1
NM_001035512SDHC1
NM_003001SDHC1
NM_001035511SDHC1
NM_005482PIGK1
NM_206909PSD31
NM_015310PSD31
NM_018970GPR851
NM_030918SNX271
NM_001042371LOC2838711
NM_004302ACVR1B1
NM_006306SMC1A1
NM_198968DZIP11
NM_014934DZIP11
NM_019089HES21
NM_016929CLIC51
NM_001039693FLJ379531
NM_022832USP461
NM_018401STK32B1
NM_138417KTI121
NM_016184CLEC4A1
NM_194450CLEC4A1
NM_194447CLEC4A1
NM_194448CLEC4A1
NM_017801CMTM61
NM_018429BDP11
NM_080604TJAP11
NM_0153511
NM_144717IL20RB1
NM_000719CACNA1C1
NM_004737LARGE1
NM_133642LARGE1
NM_016096ZNF7061
NM_001042511ZNF7061
NM_001042510ZNF7061
NM_0011006241
NM_173505ANKRD291
NM_001008493ENAH1
NM_018212ENAH1
NM_001083924C1orf1161
NM_023938C1orf1161
XM_001134426C12orf371
XM_001134418C12orf371
NM_018243SEPT111
NM_001037293PALM21
NM_053016PALM21
NM_001018003SORBS31
NM_005775SORBS31
NM_000368TSC11
NM_006390IPO81
NM_014872ZBTB51
NM_173807C1orf1011
NM_017596KIF21B1
XM_933066LOC6436961
XM_925864LOC6423251
XM_929030LOC1615271
XM_001130526LOC7286361
XM_001130555LOC7286361
XM_001130543LOC7286361
XM_001130536LOC7286361
XM_001129399LOC6423461
XM_928707LOC6423461
XM_925879LOC6423461
NM_030647JHDM1D1
NM_001419ELAVL11
NM_001010867C1orf691
NM_005990STK101
NM_020718USP311
NM_000809GABRA41
NM_019058DDIT41
NM_000891KCNJ21
NM_053003SIGLEC121
NM_033329SIGLEC121
NM_006861RAB351
NM_172373ELF11
NM_020374C12orf41
NM_002783PSG71
NM_014937INPP5F1
NM_015215CAMTA11
NM_000351STS1
NM_001017370LOC3879211
NM_001012754LOC3879211
NM_021229NTN41
NM_152345ANKRD13B1
NM_004776B4GALT51
NM_001081976ADORA31
NM_020683ADORA31
NM_020133AGPAT41
NM_005207CRKL1
NM_001025249DUT1
NM_001025248DUT1
NM_001948DUT1
NM_001037954DIXDC11
NM_033425DIXDC11
NM_023927GRAMD31
NM_001080529WIPF31
NM_214711LOC4011371
NM_005124NUP1531
NM_018367PHCA1
NM_018957SH3BP11
NM_003281TNNI11
NM_002264KPNA11
NM_004796NRXN31
NM_0011052501
NM_138970NRXN31
NM_0010988191
NM_0010988181
NM_000923PDE4C1
NM_201252AFAR31
NM_015879ST8SIA31
NM_145307PLEKHK11
NM_022340ZFYVE201
NM_003379VIL21
NM_0011110771
NM_014220TM4SF11
NM_017563IL17RD1
NM_001080973IL17RD1
NM_178129P2RY81
XM_498841LOC4407481
NM_172128CAMK2D1
NM_172127CAMK2D1
NM_021205RHOU1
NM_014709USP341
NM_198995C18orf341
NM_0011055281
NM_0011006261
NM_006459ERLIN11
NM_001732BTN1A11
NM_024408NOTCH21
XM_001133349NOTCH21
NM_002886RAP2B1
NM_019050USP531
NM_078483SLC36A11
NM_017791C14orf581
NM_014238KSR11
NM_0010985041
NM_030881DDX171
NM_0010985051
NM_006386DDX171
NM_005604POU3F21
NM_001039770FLJ450321
NM_004879EI241
NM_001007277EI241
NM_0146921
NM_003927MBD21
NM_080669SLC46A11
NM_012423RPL13A1
NM_003012SFRP11
NM_001003788LYK51
NM_001003787LYK51
NM_153335LYK51
NM_001003786LYK51
NM_001010922C1orf1781
NM_014382ATP2C11
NM_012215MGEA51
NM_016467ORMDL11
NM_023925CAPRIN21
NM_032156CAPRIN21
NM_001002259CAPRIN21
NM_022351EFCBP11
NM_014763MRPL191
NM_172337OTX21
NM_021728OTX21
NM_001005611EDA1
NM_001483GBAS1
NM_198458ZNF4971
NM_001040613TMEM701
NM_017866TMEM701
NM_203390RBM12B1
NM_0011004271
NM_021159RAP1GDS11
NM_0011004281
NM_0011004291
NM_0011004261
NM_0011004301
NM_001014797KCNMA11
NM_032424KIAA18261
NM_006228PNOC1
NM_000462UBE3A1
NM_130839UBE3A1
NM_130838UBE3A1
NM_000340SLC2A21
NM_016540GPR831
NM_001010923C6orf1901
NM_016470C20orf1111
NM_005100AKAP121
NM_144497AKAP121
NM_017831RNF1251
NM_001204BMPR21
NM_020640DCUN1D11
NM_031431COG31
NM_001974EMR11
NM_002906RDX1
NM_024900PHF171
NM_005746PBEF11
NM_033426KIAA17371
NM_199133LOC1341451
NM_003410ZFX1
NM_017643MBTD11
NM_004277SLC25A271
NM_033058TRIM551
NM_184085TRIM551
NM_184086TRIM551
NM_184087TRIM551
XM_001131501FLJ902311
NM_001080407GLB1L31
NM_138736GNAO11
NM_002356MARCKS1
NM_006577B3GNT21
NM_002398MEIS11
NM_001083591CUGBP21
NM_001025077CUGBP21
NM_006561CUGBP21
NM_001025076CUGBP21
NM_033227TRIM231
NM_001656TRIM231
NM_033228TRIM231
NM_181435C1QTNF31
NM_030945C1QTNF31
NM_015344LEPROTL11
NM_001033723ZNF7041
NM_000210ITGA61
NM_001079818ITGA61
NM_014646LPIN21
XM_001133559LOC6446341
NM_173470TMEM321
XM_001126195LOC7279421
NM_001007245IFRD11
NM_001550IFRD11
NM_001077700MIER11
NM_001077701MIER11
NM_020948MIER11
NM_001128AP1G11
NM_001030007AP1G11
NM_001007097NTRK21
NM_0010988321
NM_032837FAM104A1
NM_198859PRICKLE21
NM_030959OR12D31
NM_172208TAPBP1
NM_006071PKDREJ1
NM_003747TNKS1
NM_033285TP53INP11
NM_153611CYBASC31
NM_015359SLC39A141
NM_030911CDADC11
NM_018452C6orf351
NM_052845MMAB1
NM_139167SGCZ1
NM_024855ACTR51
NM_006635ZNF4601
NM_198219ING11
NM_198218ING11
NM_005537ING11
NM_198217ING11
NM_153035C1orf831
NM_205846PRELID21
NM_138492PRELID21
NM_182960PRELID21
NM_019018FAM105A1
NM_000170GLDC1
NM_006694JTB1
NM_033409C20orf541
XM_209227LOC6534641
NM_017759FLJ203091
NM_018662DISC11
NM_001012957DISC11
NM_021133RNASEL1
NM_018660ZNF3951
NM_007170TESK21
NM_0331871
NM_024680E2F81
NM_139281WDR361
NM_000399EGR21
NM_005028PIP5K2A1
NM_014848SV2B1
NM_198128RNF1381
NM_016271RNF1381
NM_198468C6orf1671
NM_024792FAM57A1
NM_007350PHLDA11
NM_007197FZD101
NM_001031680RUNX31
NM_004350RUNX31
NM_175918CRIPAK1
NM_001412EIF1AX1
NM_001516GTF2H31
NM_000745CHRNA51
NM_001001974PLEKHA11
NM_021622PLEKHA11
NM_001012756ZNF2601
NM_001329CTBP21
NM_0010839141
NM_022802CTBP21
NM_017656ZNF5621
NM_001083617RB1CC11
NM_014781RB1CC11
NM_004782SNAP291
NM_018200HMG20A1
NM_013377PDZRN41
NM_152399TMEM1551
NM_001083621ZBTB401
NM_014870ZBTB401
NM_020766PCDH191
NM_0011052431
NM_015450POT11
NM_001042594POT11
NM_020949SLC7A141
XM_001129292MBOAT21
NM_139239TA-NFKBH1
NM_020947KIAA16091
NM_016575NT5DC31
NM_018227UBE1L21
NM_182597FLJ395751
NM_173799VSIG91
NM_015727TACR11
XM_001131234LOC7303381
XM_001126530LOC7305481
NM_001892CSNK1A11
NM_001025105CSNK1A11
NM_178581HM131
NM_030789HM131
NM_178580HM131
NM_018434RNF1301
NM_001018058TFEC1
NM_012252TFEC1
NM_020859SHROOM31
NM_001880ATF21
NM_015198COBL1
NM_152415VPS37A1
NM_001080391SP1001
NM_002620PF4V11
NM_006809TOMM341
NM_014850SRGAP31
NM_001033117SRGAP31
NM_032487ARPM11
NM_003713PPAP2B1
NM_177414PPAP2B1
NM_032132HORMAD11
NM_000909NPY1R1
NM_006482DYRK21
NM_003583DYRK21
NM_003298NR2C21
NM_032373PCGF51
NM_001008496PIWIL31
NM_014830ZBTB391
NM_001077440BCLAF11
NM_001077441BCLAF11
NM_014739BCLAF11
NM_006818MLLT111
NM_031284ADPGK1
NM_007007CPSF61
NM_001717BNC11
NM_015443KIAA12671
NM_001024596ZNF7721
NM_032458PHF61
NM_001015877PHF61
NM_025224ZBTB461
NM_002709PPP1CB1
NM_206876PPP1CB1

Immunostimulatory motif search results


UGUGU - Judge et al. Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol. 2005 Apr;23(4):457-62. (PMID: 15778705)
No Immunostimulatory motif found (UGUGU).

GUCCUUCAA - Hornung et al. Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7. Nat Med. 2005 Mar;11(3):263-70. Epub 2005 Feb 20. (PMID: 15723075)
No Immunostimulatory motif found (GUCCUUCAA).



Settings used for search

Scores were calculated using scoring scheme SS1
Using AVG scoring mode.

Hit scores

ParameterSpec. Score cut-offColourComment
Hit to same geneColourHits to the same accession or genes with 100 percent identity (i.e. likely transcript variants). It is advisable to always check the genes hit.
High scoring hit≥80ColourHits are very likely to cause an off-target effect
Medium scoring hit<80¸≥40ColourHits with a small chance of causing an off target effect.
Low scoring hitColourHits very unlikely to cause an off-target effect

The mismatches are colour coded based on the weighting of that position.

Cut-offColour
MatchColour
Wobble base pairs (G-U)Colour
Critical bases (none)Colour
0.6 bitsColour
0.4 bitsColour
0.2 bitsColour

About SpecificityServer

SpecificityServer is designed to help you identify potential non-specific matches to your siRNA. It incorporates the latest information about non-specific matches (sequence-specific only).

Designed by: Alistair Chalk, Quan Du, Zicai Liang and Erik L.L. Sonnhammer


For more details about the algorithm "siRNA specificity searching incorporating mismatch tolerance data" Bioinformatics (2008) 24 (10): 1316-1317