Domain-domain interaction prediction server
  • Home
  • Algorithm
  • Datasets
  • References
  • Developers
  • Contact
  • Important Sites

  • Some of the relevant sites and their usage are described below-

    Site NameDescriptionLink
    PFAMDatabase of protein domain families
    3didDatabase of domain-domain interactions
    Protein Data BankMacromolecular structure database
    iPFAMProtein Domain Interactions Database
    DomainGraphDomainGraph is a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks
    DDINetPredicted domain interactions using K-GIDDI's methods
    [Liu, M., X. W. Chen, et al. (2009). "Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks." Bioinformatics 25(19): 2492-2499.]
    DOMINEDOMINE is a database of known and predicted protein domain (domain-domain) interactions
    Conserved Domains Database (CDD)CDD is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins
    InterDomInterDom is a database of putative interacting protein domains derived from multiple sources, ranging from domain fusions (Rosetta Stone), protein interactions (DIP and BIND), protein complexes (PDB), to scientific literature (MEDLINE).
    d-Omixa mixer of generic protein domain analysis tools
    InterProInterPro is an integrated database of predictive protein "signatures" used for the classification and automatic annotation of proteins and genomes