VIRmiRNA -A database of viral miRNA
VMR_0026 details

miRNA Id:VMR_0026
Virus:Bovine herpesvirus 1 (BoHV1)
Taxonomy:View
Nomenclature:bhv1-miR-b5
miRNA Sequence: cucggagggcucggaggacgacuc
Length: 24
Predicted secondary structure (UNAfold):
GC Content (%):70.83
pre-miRNA:bhv1-mir-b5
pre-miRNA Sequence:ucggacucggagggcucggaggacgacucuuggucggagucagaagagucgucgucggggcucagcaccuccgaccuga
Arm: 5p
Cell line: MDBK cells
Method:Solexa(NGS)
Reference: 19793906
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed