VIRmiRNA -A database of viral miRNA
VMR_0235 details

miRNA Id:VMR_0235
Virus:Human cytomegalovirus (HCMV)
Taxonomy:View
Nomenclature:hcmv-miR-us25-1
miRNA Sequence: aaccgcucaguggcucggacc
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):66.67
pre-miRNA:hcmv-mir-us25-1
pre-miRNA Sequence:ugugaaccgcucaguggcucggaccgccggcuguuucugcgcaccgguccgaacgcuaggucgguucuca
Arm: 5p
Cell line: BCBL-1, BJAB cells
Method:Cloned, Solexa(NGS)
Reference: 15782219, 22013051
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed