VIRmiRNA -A database of viral miRNA
VMR_0245 details

miRNA Id:VMR_0245
Virus:Human cytomegalovirus (HCMV)
Taxonomy:View
Nomenclature:hcmv-miR-us5-1
miRNA Sequence: ugacaagccugacgagagcgu
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):57.14
pre-miRNA:hcmv-mir-us5-1
pre-miRNA Sequence:ugaacgcuuucgucguguuuuucaugcagcuuuuacagaccaugacaagccugacgagagcguuca
Arm: 3p
Cell line: BCBL-1, BJAB cells
Method:Cloned, Northern Blot Analysis, Solexa(NGS)
Reference: 15782219, 16140786, 22013051, 22715351
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed