miRNA Id: | VMR_0245 |
Virus: | Human cytomegalovirus (HCMV) |
Taxonomy: | View |
Nomenclature: | hcmv-miR-us5-1 |
miRNA Sequence: | ugacaagccugacgagagcgu |
Length: | 21 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 57.14 |
pre-miRNA: | hcmv-mir-us5-1 |
pre-miRNA Sequence: | ugaacgcuuucgucguguuuuucaugcagcuuuuacagaccaugacaagccugacgagagcguuca |
Arm: | 3p |
Cell line: | BCBL-1, BJAB cells |
Method: | Cloned, Northern Blot Analysis, Solexa(NGS) |
Reference: | 15782219, 16140786, 22013051, 22715351 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |