VIRmiRNA -A database of viral miRNA
VMR_0247 details

miRNA Id:VMR_0247
Virus:Human cytomegalovirus (HCMV)
Taxonomy:View
Nomenclature:hcmv-miR-us5-2
miRNA Sequence: uuaugauaggugugacgauguc
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):40.91
pre-miRNA:hcmv-mir-us5-2
pre-miRNA Sequence:ggaggcuuucgccacaccuauccugaaagcguugcauucuuuaugauaggugugacgaugucuuu
Arm: 3p
Cell line: BCBL-1, BJAB cells
Method:Cloned, Solexa(NGS)
Reference: 15782219, 22013051
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed