VIRmiRNA -A database of viral miRNA
VMR_0254 details

miRNA Id:VMR_0254
Virus:Human herpesvirus 6B (HHV-6)
Taxonomy:View
Nomenclature:hhv6b-miR-ro6-3-3p
miRNA Sequence: agaccgagcgggcuccauccg
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):71.43
pre-miRNA:pre-hhv6b-miR-Ro6-3
pre-miRNA Sequence:ccggagcggcgacggagcccgcucgguaucgcggacgugcgagaccgagcgggcuccauccgccgcucgguc
Arm: 3p
Cell line: Sup-T-1 cells
Method:Deep sequencing
Reference: 22114334
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed