VIRmiRNA -A database of viral miRNA
VMR_0290 details

miRNA Id:VMR_0290
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h1
miRNA Sequence: gauggaaggacgggaagugga
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):57.14
pre-miRNA:hsv1-mir-h1
pre-miRNA Sequence:cgaggggaacgggggauggaaggacgggaaguggaaguccugauacccauccuacaccccccugccuuccacccuccggccccccg
Arm: 5p
Cell line: Vero cells
Method:Northern blot analysis, Solexa(NGS)
Reference: 16699030, 20181707
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed