miRNA Id: | VMR_0301 |
Virus: | Herpes simplex virus 1 (HSV1) |
Taxonomy: | View |
Nomenclature: | hsv1-miR-h2 |
miRNA Sequence: | ccugagccagggacgagugcgacu |
Length: | 24 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 66.67 |
pre-miRNA: | hsv1-mir-h2 |
pre-miRNA Sequence: | gccaccgucgcacgcgcccggcacagacucuguucuugguucgcggccugagccagggacgagugcgacuggggc |
Arm: | 3p |
Cell line: | HEK293, Vero cells |
Method: | Solexa(NGS), RT-PCR |
Reference: | 20181707, 18596690 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |