VIRmiRNA -A database of viral miRNA
VMR_0312 details

miRNA Id:VMR_0312
Virus:Herpes Simplex Virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h6
miRNA Sequence: cacuucccguccuuccauccc
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):61.9
pre-miRNA:hsv1-mir-h6
pre-miRNA Sequence:cggggggccggaggguggaaggcagggggguguaggauggguaucaggacuuccacuucccguccuuccaucccccguuccccucg
Arm: 3p
Cell line: HEK293T, Vero cells
Method:Northern blot analysis,RT-PCR
Reference: 18596690
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed