miRNA Id: | VMR_0321 |
Virus: | Herpes simplex virus 2 (HSV2) |
Taxonomy: | View |
Nomenclature: | hsv2-miR-h11* |
miRNA Sequence: | aagcguucgcacuuuguccua |
Length: | 21 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 47.62 |
pre-miRNA: | hsv2-mir-h11 |
pre-miRNA Sequence: | ucggcagggggcguggccgcccuucuaaaaaaagugagaacgcgaagcguucgcacuuuguccuaauaauauauauacuauuaggacaaagugcgaacgcuucgcguucucacuuuuuuuagaagggcggccacgcccccuuuga |
Arm: | 5p |
Cell line: | HEK293, Vero cells |
Method: | Solexa(NGS) |
Reference: | 20181707 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |