miRNA Id: | VMR_0368 |
Virus: | Herpesvirus of turkeys (HVT) |
Taxonomy: | View |
Nomenclature: | hvt-miR-h3-5p |
miRNA Sequence: | cgucauggaucgcggggggacg |
Length: | 22 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 72.73 |
pre-miRNA: | hvt-mir-h3 |
pre-miRNA Sequence: | cugcgucauggaucgcggggggacgccgccgcggaccggucaauguggcgguucccgacggaggcucggcgguc |
Arm: | 5p |
Cell line: | CEF, CK, CEK cells |
Method: | Solexa(NGS) |
Reference: | 19328516 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |