VIRmiRNA -A database of viral miRNA
VMR_0392 details

miRNA Id:VMR_0392
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-1
miRNA Sequence: auuacaggaaacuggguguaagc
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):43.48
pre-miRNA:kshv-mir-k12-1
pre-miRNA Sequence:cgauuacaggaaacuggguguaagcuguacauaauccccggcagcaccuguuuccugcaacccucgu
Arm: 5p
Cell line: BC-1, BCBL-1, BJAB cells
Method:Solexa(NGS)
Reference: 15800047, 19889781, 20566670, 22100165
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed