VIRmiRNA -A database of viral miRNA
VMR_0535 details

miRNA Id:VMR_0535
Virus:Mouse gammaherpesvirus 68 (MGHV)
Taxonomy:View
Nomenclature:mghv-miR-m1-13-5p
miRNA Sequence: ugggaagagucuguugaguggc
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):54.55
pre-miRNA:mghv-mir-m1-13
pre-miRNA Sequence:ugggaagagucuguugaguggccgcguagguuguaagcuaucucaugugagcucuucuuu
Arm: 5p
Cell line: S11, Ag8, NIH3T3 cells
Method:454, Northern blot analysis, RT-PCR
Reference: 20668074, 20660200, 23110115
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed