VIRmiRNA -A database of viral miRNA
VMR_0541 details

miRNA Id:VMR_0541
Virus:Mouse gammaherpesvirus 68 (MGHV)
Taxonomy:View
Nomenclature:mghv-miR-m1-3
miRNA Sequence: gaggugagcaggaguugcgcuu
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):59.09
pre-miRNA:mghv-mir-m1-3
pre-miRNA Sequence:gaaguagcgaaccucugcucacugcccgggcccuccgggaggugagcaggaguugcgcuuu
Arm: 3p
Cell line: MHV68, NIH3T3, S11 cell line
Method:Cloned, 454
Reference: 15782219, 20668074, 23110115
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed