VIRmiRNA -A database of viral miRNA
VMR_1102 details

miRNA Id:VMR_1102
Virus:Rhesus rhadinovirus (RRV)
Taxonomy:View
Nomenclature:rrv-miR-rr1-1-5p
miRNA Sequence: cgaucgcaccuuuggccggc
Length: 20
Predicted secondary structure (UNAfold):
GC Content (%):70
pre-miRNA:rrv-mir-rr1-1
pre-miRNA Sequence:gggucagaccccgcgaucgcaccuuuggccggccggccucugcccggccaccgaggaugcggucaaugggucgaaccc
Arm: 5p
Cell line: HEK293T cells
Method:Deep sequencing
Reference: 20655562, 17451774
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed