VIRsiRNAdb

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• VsiRNAid

Total number of Results for 1B are 5
Results from 0 - 25

siRNA sequence "gaagggaugguauuggaaa" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gaagggaugguauuggaaa" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1282 " record
Length: 19
GC Content:42 %
Starting position: 225
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gaagggaugguauuggaaa" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gacguucaguguaaugcaa" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gacguucaguguaaugcaa" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1281 " record
Length: 19
GC Content:42 %
Starting position: 325
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gacguucaguguaaugcaa" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcaggaagcagcuaacaua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcaggaagcagcuaacaua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1280 " record
Length: 19
GC Content:47 %
Starting position: 75
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcaggaagcagcuaacaua" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcacugcaacuuuggucua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcacugcaacuuuggucua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1277 " record
Length: 19
GC Content:47 %
Starting position: 624
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcacugcaacuuuggucua" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gaaccacugcaacuuuggu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gaaccacugcaacuuuggu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1283 " record
Length: 19
GC Content:47 %
Starting position: 621
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gaaccacugcaacuuuggu" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1282	gaagggaugguauuggaaa	Human Coxsackievirus [CV]	1B	293T	mRNA	65	18662724	Blast SL	refseqs
virsi1281	gacguucaguguaaugcaa	Human Coxsackievirus [CV]	1B	293T	mRNA	64	18662724	Blast SL	refseqs
virsi1280	gcaggaagcagcuaacaua	Human Coxsackievirus [CV]	1B	293T	mRNA	54	18662724	Blast SL	refseqs
virsi1277	gcacugcaacuuuggucua	Human Coxsackievirus [CV]	1B	293T	mRNA	43	18662724	Blast SL	refseqs
virsi1283	gaaccacugcaacuuuggu	Human Coxsackievirus [CV]	1B	293T	mRNA	36	18662724	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm