VIRsiRNAdb

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• VsiRNAid

Total number of Results for 1D are 5
Results from 0 - 25

siRNA sequence "ggucgucuaaugcuaguga" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggucgucuaaugcuaguga" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1274 " record
Length: 19
GC Content:47 %
Starting position: 161
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggucgucuaaugcuaguga" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcacuuccagagauucguu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcacuuccagagauucguu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1269 " record
Length: 19
GC Content:47 %
Starting position: 488
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcacuuccagagauucguu" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "guguuguaccagcacuaca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guguuguaccagcacuaca" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1273 " record
Length: 19
GC Content:47 %
Starting position: 125
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guguuguaccagcacuaca" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gacuaguagagacaagaua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gacuaguagagacaagaua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1272 " record
Length: 19
GC Content:37 %
Starting position: 864
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gacuaguagagacaagaua" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcagcacuaguagagacaa" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcagcacuaguagagacaa" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1270 " record
Length: 19
GC Content:47 %
Starting position: 860
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcagcacuaguagagacaa" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1274	ggucgucuaaugcuaguga	Human Coxsackievirus [CV]	1D	293T	mRNA	84	18662724	Blast SL	refseqs
virsi1269	gcacuuccagagauucguu	Human Coxsackievirus [CV]	1D	293T	mRNA	82	18662724	Blast SL	refseqs
virsi1273	guguuguaccagcacuaca	Human Coxsackievirus [CV]	1D	293T	mRNA	81	18662724	Blast SL	refseqs
virsi1272	gacuaguagagacaagaua	Human Coxsackievirus [CV]	1D	293T	mRNA	67	18662724	Blast SL	refseqs
virsi1270	gcagcacuaguagagacaa	Human Coxsackievirus [CV]	1D	293T	mRNA	59	18662724	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm