VIRsiRNAdb

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Total number of Results for 3C Pro are 2
Results from 0 - 25

siRNA sequence "agcuacuuugcgaguaugcaaggugagau" alignment with "Enterovirus [EV]" virus reference Genome sequences
siRNA sequence matching with "agcuacuuugcgaguaugcaaggugagau" Enterovirus [EV]" Virus reference Genome sequences
Browse all the records for "Enterovirus [EV]" virus
Browse "virsi1780 " record
Length: 29
GC Content:45 %
Starting position: 5919
Strain of Virus: EV71 Strain 5865/SIN/00009
GenBank Acc: AF316321
Transfection Reagent: Lipofectamine 2000CD
Incubation Time (Hours):48

Offtargets for "agcuacuuugcgaguaugcaaggugagau" siRNA in Human Genome sequences
See AF316321 at Genbank
Pubmed:17316836
Article:Enhanced potency and efficacy of 29-mer shRNAs in inhibition of Enterovirus 71.
Authors:Tan EL, Tan TM, Chow VT, Poh CL.
Journal:Antiviral Res. 2007 Apr;74(1):9-15. Epub 2007 Jan 31.
Entrez:17316836

siRNA sequence "cuacuuugcgaguaugca" alignment with "Enterovirus [EV]" virus reference Genome sequences
siRNA sequence matching with "cuacuuugcgaguaugca" Enterovirus [EV]" Virus reference Genome sequences
Browse all the records for "Enterovirus [EV]" virus
Browse "virsi1784 " record
Length: 18
GC Content:44 %
Starting position: 5918
Strain of Virus: EV71 (5865/Sin/000009)
GenBank Acc: AF316321
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cuacuuugcgaguaugca" siRNA in Human Genome sequences
See AF316321 at Genbank
Pubmed:16083932
Article:RNA interference against enterovirus 71 infection.
Authors:Sim AC, Luhur A, Tan TM, Chow VT, Poh CL.
Journal:Virology. 2005 Oct 10;341(1):72-9.
Entrez:16083932


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1780	agcuacuuugcgaguaugcaaggugagau	Enterovirus [EV]	3C Pro	RD	Protein	89	17316836	Blast SL	refseqs
virsi1784	cuacuuugcgaguaugca	Enterovirus [EV]	3C Pro	RD	RNA	76	16083932	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm