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- Family of Virus
- Virus Name
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- VsiRNAid
Total number of Results for 3D RdRp are 7
Results from 0 - 25
siRNA sequence "cuaaggaccuaacaaaguu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cuaaggaccuaacaaaguu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1793 " record
Length: 19
GC Content:37 %
Starting position: 6314
Strain of Virus: CVB3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):19
Length: 19
GC Content:37 %
Starting position: 6314
Strain of Virus: CVB3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):19
Offtargets for "cuaaggaccuaacaaaguu" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:20005874
Article:Application of small interfering RNAs modified by unlocked nucleic acid (UNA) to inhibit the heart-pathogenic coxsackievirus B3.
Authors:Werk D, Wengel J, Wengel SL, Grunert HP, Zeichhardt H, Kurreck J.
Journal:FEBS Lett. 2010 Feb 5;584(3):591-8. Epub 2010 Jan 13.
Entrez:20005874
Article:Application of small interfering RNAs modified by unlocked nucleic acid (UNA) to inhibit the heart-pathogenic coxsackievirus B3.
Authors:Werk D, Wengel J, Wengel SL, Grunert HP, Zeichhardt H, Kurreck J.
Journal:FEBS Lett. 2010 Feb 5;584(3):591-8. Epub 2010 Jan 13.
Entrez:20005874
siRNA sequence "cuaaggaccuaacaaaguu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cuaaggaccuaacaaaguu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1839 " record
Length: 19
GC Content:37 %
Starting position: 6314
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 19
GC Content:37 %
Starting position: 6314
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "cuaaggaccuaacaaaguu" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:15670596
Article:Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs.
Authors:Schubert S, Grunert HP, Zeichhardt H, Werk D, Erdmann VA, Kurreck J.
Journal:J Mol Biol. 2005 Feb 18;346(2):457-65. Epub 2004 Dec 23.
Entrez:15670596
Article:Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs.
Authors:Schubert S, Grunert HP, Zeichhardt H, Werk D, Erdmann VA, Kurreck J.
Journal:J Mol Biol. 2005 Feb 18;346(2):457-65. Epub 2004 Dec 23.
Entrez:15670596
siRNA sequence "cuaaggaccuaacaaaguu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cuaaggaccuaacaaaguu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1807 " record
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Offtargets for "cuaaggaccuaacaaaguu" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
siRNA sequence "guacaaaacuuuccaccua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacaaaacuuuccaccua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1806 " record
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Offtargets for "guacaaaacuuuccaccua" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
siRNA sequence "guacagggauaaacauuac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacagggauaaacauuac" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1840 " record
Length: 19
GC Content:37 %
Starting position: 6735
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 19
GC Content:37 %
Starting position: 6735
Strain of Virus: B3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "guacagggauaaacauuac" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:15670596
Article:Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs.
Authors:Schubert S, Grunert HP, Zeichhardt H, Werk D, Erdmann VA, Kurreck J.
Journal:J Mol Biol. 2005 Feb 18;346(2):457-65. Epub 2004 Dec 23.
Entrez:15670596
Article:Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs.
Authors:Schubert S, Grunert HP, Zeichhardt H, Werk D, Erdmann VA, Kurreck J.
Journal:J Mol Biol. 2005 Feb 18;346(2):457-65. Epub 2004 Dec 23.
Entrez:15670596
siRNA sequence "guacagggauaaacauuac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacagggauaaacauuac" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1809 " record
Length: 19
GC Content:37 %
Starting position: 6735
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Length: 19
GC Content:37 %
Starting position: 6735
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Offtargets for "guacagggauaaacauuac" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
siRNA sequence "gcacgaauaugaggaguuc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcacgaauaugaggaguuc" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1808 " record
Length: 19
GC Content:47 %
Starting position: 7191
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Length: 19
GC Content:47 %
Starting position: 7191
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68
Offtargets for "gcacgaauaugaggaguuc" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410
| VIRsiRNAid | siRNA Sequence |  Virus_Name | Target Region | Cell Line | Test Object | Efficacy | PMID | Offtarget | Align With | ALIGN0 Result |
|---|---|---|---|---|---|---|---|---|---|---|
| virsi1793 | cuaaggaccuaacaaaguu | Human Coxsackievirus [CV] |  SL | refseqs |  | |||||
| virsi1839 | cuaaggaccuaacaaaguu | Human Coxsackievirus [CV] | SL | refseqs |  | |||||
| virsi1807 | cuaaggaccuaacaaaguu | Human Coxsackievirus [CV] | SL | refseqs |  | |||||
| virsi1806 | guacaaaacuuuccaccua | Human Coxsackievirus [CV] | SL | refseqs |  | |||||
| virsi1840 | guacagggauaaacauuac | Human Coxsackievirus [CV] | SL | refseqs |  | |||||
| virsi1809 | guacagggauaaacauuac | Human Coxsackievirus [CV] | SL | refseqs |  | |||||
| virsi1808 | gcacgaauaugaggaguuc | Human Coxsackievirus [CV] | SL | refseqs |  |
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific SL: siRNA seedlocator algorithm