VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
5\'NTR
are
4
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi2338
auggcugcuuauggugaca
Human Coxsackievirus [CV]
5'NTR
MRC5
Protein
Low
20739472
Blast
SL
refseqs
     
siRNA sequence "
auggcugcuuauggugaca
" alignment with "
Human Coxsackievirus [CV]
" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "
Human Coxsackievirus [CV]
" virus
Browse "
virsi2338
" record
Length:
19
GC Content:
47 %
Strain of Virus:
A24
GenBank Acc:
D90457
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
12
Offtargets for "
auggcugcuuauggugaca
" siRNA in Human Genome sequences
See
D90457
at Genbank
Pubmed:
20739472
Article:
An antiviral small-interfering RNA simultaneously effective against the most prevalent enteroviruses causing acute hemorrhagic conjunctivitis.
Authors:
Jun EJ, Won MA, Ahn J, Ko A, Moon H, Tchah H, Kim YK, Lee H. Invest Ophthalmol Vis Sci. 2011 Jan 5;52(1):58-63. Print 2011 Jan. Invest Ophthalmol Vis Sci. 2011 20739472
Journal:
Entrez:
virsi2343
auggcugcuuauggugaca
Enterovirus [EV]
5'NTR
MRC5
Protein
Low
20739472
Blast
SL
refseqs
     
siRNA sequence "
auggcugcuuauggugaca
" alignment with "
Enterovirus [EV]
" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "
Enterovirus [EV]
" virus
Browse "
virsi2343
" record
Length:
19
GC Content:
47 %
Strain of Virus:
EV70
GenBank Acc:
D00820
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
12
Offtargets for "
auggcugcuuauggugaca
" siRNA in Human Genome sequences
See
D00820
at Genbank
Pubmed:
20739472
Article:
An antiviral small-interfering RNA simultaneously effective against the most prevalent enteroviruses causing acute hemorrhagic conjunctivitis.
Authors:
Jun EJ, Won MA, Ahn J, Ko A, Moon H, Tchah H, Kim YK, Lee H. Invest Ophthalmol Vis Sci. 2011 Jan 5;52(1):58-63. Print 2011 Jan. Invest Ophthalmol Vis Sci. 2011 20739472
Journal:
Entrez:
virsi2339
ggcugcuuauggugacaau
Human Coxsackievirus [CV]
5'NTR
MRC5
Protein
0
20739472
Blast
SL
refseqs
     
siRNA sequence "
ggcugcuuauggugacaau
" alignment with "
Human Coxsackievirus [CV]
" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "
Human Coxsackievirus [CV]
" virus
Browse "
virsi2339
" record
Length:
19
GC Content:
47 %
Strain of Virus:
A24
GenBank Acc:
D90457
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
12
Offtargets for "
ggcugcuuauggugacaau
" siRNA in Human Genome sequences
See
D90457
at Genbank
Pubmed:
20739472
Article:
An antiviral small-interfering RNA simultaneously effective against the most prevalent enteroviruses causing acute hemorrhagic conjunctivitis.
Authors:
Jun EJ, Won MA, Ahn J, Ko A, Moon H, Tchah H, Kim YK, Lee H. Invest Ophthalmol Vis Sci. 2011 Jan 5;52(1):58-63. Print 2011 Jan. Invest Ophthalmol Vis Sci. 2011 20739472
Journal:
Entrez:
virsi2344
ggcugcuuauggugacaau
Enterovirus [EV]
5'NTR
MRC5
Protein
0
20739472
Blast
SL
refseqs
     
siRNA sequence "
ggcugcuuauggugacaau
" alignment with "
Enterovirus [EV]
" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "
Enterovirus [EV]
" virus
Browse "
virsi2344
" record
Length:
19
GC Content:
47 %
Strain of Virus:
EV70
GenBank Acc:
D00820
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
12
Offtargets for "
ggcugcuuauggugacaau
" siRNA in Human Genome sequences
See
D00820
at Genbank
Pubmed:
20739472
Article:
An antiviral small-interfering RNA simultaneously effective against the most prevalent enteroviruses causing acute hemorrhagic conjunctivitis.
Authors:
Jun EJ, Won MA, Ahn J, Ko A, Moon H, Tchah H, Kim YK, Lee H. Invest Ophthalmol Vis Sci. 2011 Jan 5;52(1):58-63. Print 2011 Jan. Invest Ophthalmol Vis Sci. 2011 20739472
Journal:
Entrez:
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm