VIRsiRNAdb

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• VsiRNAid

Total number of Results for F are 8
Results from 0 - 25

siRNA sequence "gcugucagcuucagucaau" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gcugucagcuucagucaau" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2085 " record
Length: 19
GC Content:47 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gcugucagcuucagucaau" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "ggaaacacuggcuucauua" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "ggaaacacuggcuucauua" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2090 " record
Length: 19
GC Content:42 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggaaacacuggcuucauua" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gcacaggaagacacccuau" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gcacaggaagacacccuau" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2088 " record
Length: 19
GC Content:53 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gcacaggaagacacccuau" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gggauaacaccagcaauau" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gggauaacaccagcaauau" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2086 " record
Length: 19
GC Content:42 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gggauaacaccagcaauau" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gcaucaucaucauaaucaa" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gcaucaucaucauaaucaa" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2091 " record
Length: 19
GC Content:32 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gcaucaucaucauaaucaa" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "gggugaacagcauguaaua" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "gggugaacagcauguaaua" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2089 " record
Length: 19
GC Content:42 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gggugaacagcauguaaua" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "ggcuugagagugaagugaa" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "ggcuugagagugaagugaa" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2084 " record
Length: 19
GC Content:47 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggcuugagagugaagugaa" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783

siRNA sequence "ccacuguuuacuacccaaa" alignment with "Human Metapneumovirus" virus reference Genome sequences
siRNA sequence matching with "ccacuguuuacuacccaaa" Human Metapneumovirus" Virus reference Genome sequences
Browse all the records for "Human Metapneumovirus" virus
Browse "virsi2087 " record
Length: 19
GC Content:42 %
Strain of Virus: A1 Clinical Strain (C-85473)
GenBank Acc: AY297748
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ccacuguuuacuacccaaa" siRNA in Human Genome sequences
See AY297748 at Genbank
Pubmed:18839783
Article:Inhibition of human metapneumovirus replication by small interfering RNA.
Authors:Deffrasnes C, Cavanagh MH, Goyette N, Cui K, Ge Q, Seth S, Templin MV, Quay SC, Johnson PH, Boivin G.
Journal:Antivir Ther. 2008;13(6):821-32.
Entrez:18839783


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2085	gcugucagcuucagucaau	Human Metapneumovirus	F	LLC-MK2	RNA	72	18839783	Blast SL	refseqs
virsi2090	ggaaacacuggcuucauua	Human Metapneumovirus	F	LLC-MK2	RNA	44	18839783	Blast SL	refseqs
virsi2088	gcacaggaagacacccuau	Human Metapneumovirus	F	LLC-MK2	RNA	31	18839783	Blast SL	refseqs
virsi2086	gggauaacaccagcaauau	Human Metapneumovirus	F	LLC-MK2	RNA	18	18839783	Blast SL	refseqs
virsi2091	gcaucaucaucauaaucaa	Human Metapneumovirus	F	LLC-MK2	RNA	14	18839783	Blast SL	refseqs
virsi2089	gggugaacagcauguaaua	Human Metapneumovirus	F	LLC-MK2	RNA	4	18839783	Blast SL	refseqs
virsi2084	ggcuugagagugaagugaa	Human Metapneumovirus	F	LLC-MK2	RNA	0	18839783	Blast SL	refseqs
virsi2087	ccacuguuuacuacccaaa	Human Metapneumovirus	F	LLC-MK2	RNA	0	18839783	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm