VIRsiRNAdb

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Total number of Results for Pol are 8
Results from 0 - 25

siRNA sequence "ugucaaccgcuucaaugug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ugucaaccgcuucaaugug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1326 " record
Length: 19
GC Content:47 %
Starting position: 137
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ugucaaccgcuucaaugug" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "ugucugauagagaucuuua" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ugucugauagagaucuuua" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1327 " record
Length: 19
GC Content:32 %
Starting position: 178
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ugucugauagagaucuuua" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "aggacaugaccuaccguag" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aggacaugaccuaccguag" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1328 " record
Length: 19
GC Content:53 %
Starting position: 394
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aggacaugaccuaccguag" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "uaugacuaugucauauuca" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "uaugacuaugucauauuca" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1330 " record
Length: 19
GC Content:26 %
Starting position: 72
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uaugacuaugucauauuca" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "aucuuaggauugccuacgc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aucuuaggauugccuacgc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1329 " record
Length: 19
GC Content:47 %
Starting position: 24
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aucuuaggauugccuacgc" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "aucuuaggauugccuacgc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aucuuaggauugccuacgc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1332 " record
Length: 19
GC Content:47 %
Starting position: 24
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aucuuaggauugccuacgc" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "aucuuaggauugccuacgc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aucuuaggauugccuacgc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1333 " record
Length: 19
GC Content:47 %
Starting position: 24
GenBank Acc: AY268070
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aucuuaggauugccuacgc" siRNA in Human Genome sequences
See AY268070 at Genbank
Pubmed:15183056
Article:Attenuation of SARS coronavirus by a short hairpin RNA expression plasmid targeting RNA-dependent RNA polymerase.
Authors:Lu A, Zhang H, Zhang X, Wang H, Hu Q, Shen L, Schaffhausen BS, Hou W, Li L.
Journal:Virology. 2004 Jun 20;324(1):84-9.
Entrez:15183056

siRNA sequence "ucaugacaccagcaga" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ucaugacaccagcaga" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1800 " record
Length: 16
GC Content:50 %
Starting position: 6971
Strain of Virus: CVB3 Woodruff Strain
GenBank Acc: M33854
Transfection Reagent: Oligofectamine
Incubation Time (Hours):12

Offtargets for "ucaugacaccagcaga" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:15956603
Article:A small interfering RNA targeting coxsackievirus B3 protects permissive HeLa cells from viral challenge.
Authors:Ahn J, Jun ES, Lee HS, Yoon SY, Kim D, Joo CH, Kim YK, Lee H.
Journal:J Virol. 2005 Jul;79(13):8620-4.
Entrez:15956603


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1326	ugucaaccgcuucaaugug	SARS Coronavirus	Pol	293	mRNA	Medium	15183056	Blast SL	refseqs
virsi1327	ugucugauagagaucuuua	SARS Coronavirus	Pol	293	mRNA	Medium	15183056	Blast SL	refseqs
virsi1328	aggacaugaccuaccguag	SARS Coronavirus	Pol	293	mRNA	Medium	15183056	Blast SL	refseqs
virsi1330	uaugacuaugucauauuca	SARS Coronavirus	Pol	293	mRNA	Medium	15183056	Blast SL	refseqs
virsi1329	aucuuaggauugccuacgc	SARS Coronavirus	Pol	Vero E6	Protein	High	15183056	Blast SL	refseqs
virsi1332	aucuuaggauugccuacgc	SARS Coronavirus	Pol	HeLa	Protein	High	15183056	Blast SL	refseqs
virsi1333	aucuuaggauugccuacgc	SARS Coronavirus	Pol	293	Protein	High	15183056	Blast SL	refseqs
virsi1800	ucaugacaccagcaga	Human Coxsackievirus [CV]	Pol	HeLa	Protein	64	15956603	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm