VIRsiRNAdb

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• VsiRNAid

Total number of Results for Replicase Ia are 15
Results from 0 - 25

siRNA sequence "gcacuugucuaccuugaug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcacuugucuaccuugaug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1356 " record
Length: 19
GC Content:47 %
Strain of Virus: GZ34
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gcacuugucuaccuugaug" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gcacuugucuaccuugaug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcacuugucuaccuugaug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1363 " record
Length: 19
GC Content:47 %
Starting position: 1194
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gcacuugucuaccuugaug" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gcacuugucuaccuugaug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcacuugucuaccuugaug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1357 " record
Length: 19
GC Content:47 %
Strain of Virus: HKR1
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gcacuugucuaccuugaug" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gcacuugucuaccuugaug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gcacuugucuaccuugaug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1352 " record
Length: 19
GC Content:47 %
Strain of Virus: HKR2
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gcacuugucuaccuugaug" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "guacccucuugauugcauc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "guacccucuugauugcauc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1358 " record
Length: 19
GC Content:47 %
Strain of Virus: GZ34
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "guacccucuugauugcauc" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "guacccucuugauugcauc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "guacccucuugauugcauc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1364 " record
Length: 19
GC Content:47 %
Starting position: 834
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "guacccucuugauugcauc" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "guacccucuugauugcauc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "guacccucuugauugcauc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1359 " record
Length: 19
GC Content:47 %
Strain of Virus: HKR1
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "guacccucuugauugcauc" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "guacccucuugauugcauc" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "guacccucuugauugcauc" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1353 " record
Length: 19
GC Content:47 %
Strain of Virus: HKR2
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "guacccucuugauugcauc" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gagucgaagagaggugucu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gagucgaagagaggugucu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1355 " record
Length: 19
GC Content:53 %
Strain of Virus: GZ34
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gagucgaagagaggugucu" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gagucgaagagaggugucu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gagucgaagagaggugucu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1365 " record
Length: 19
GC Content:53 %
Starting position: 916
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gagucgaagagaggugucu" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gagucgaagagaggugucu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gagucgaagagaggugucu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1360 " record
Length: 19
GC Content:53 %
Strain of Virus: HKR1
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gagucgaagagaggugucu" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gagucgaagagaggugucu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gagucgaagagaggugucu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1354 " record
Length: 19
GC Content:53 %
Strain of Virus: HKR2
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gagucgaagagaggugucu" siRNA in Human Genome sequences
See at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gugaacucacucgugagcu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gugaacucacucgugagcu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1367 " record
Length: 19
GC Content:53 %
Starting position: 761
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gugaacucacucgugagcu" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "gguguuuccauuccaugug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gguguuuccauuccaugug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1362 " record
Length: 19
GC Content:47 %
Starting position: 5524
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "gguguuuccauuccaugug" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307

siRNA sequence "ccuccagaugaggaagaag" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ccuccagaugaggaagaag" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1361 " record
Length: 19
GC Content:53 %
Starting position: 3028
Strain of Virus: GZ50
GenBank Acc: AY304495
Transfection Reagent: Oligofectamine
Incubation Time (Hours):36

Offtargets for "ccuccagaugaggaagaag" siRNA in Human Genome sequences
See AY304495 at Genbank
Pubmed:14645307
Article:Inhibition of SARS-associated coronavirus infection and replication by RNA interference.
Authors:He ML, Zheng B, Peng Y, Peiris JS, Poon LL, Yuen KY, Lin MC, Kung HF, Guan Y.
Journal:JAMA. 2003 Nov 26;290(20):2665-6. No abstract available.
Entrez:14645307


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1356	gcacuugucuaccuugaug	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	93	14645307	Blast SL	refseqs
virsi1363	gcacuugucuaccuugaug	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	93	14645307	Blast SL	refseqs
virsi1357	gcacuugucuaccuugaug	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	93	14645307	Blast SL	refseqs
virsi1352	gcacuugucuaccuugaug	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	93	14645307	Blast SL	refseqs
virsi1358	guacccucuugauugcauc	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	90	14645307	Blast SL	refseqs
virsi1364	guacccucuugauugcauc	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	90	14645307	Blast SL	refseqs
virsi1359	guacccucuugauugcauc	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	90	14645307	Blast SL	refseqs
virsi1353	guacccucuugauugcauc	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	90	14645307	Blast SL	refseqs
virsi1355	gagucgaagagaggugucu	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	86	14645307	Blast SL	refseqs
virsi1365	gagucgaagagaggugucu	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	86	14645307	Blast SL	refseqs
virsi1360	gagucgaagagaggugucu	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	86	14645307	Blast SL	refseqs
virsi1354	gagucgaagagaggugucu	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	86	14645307	Blast SL	refseqs
virsi1367	gugaacucacucgugagcu	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	65	14645307	Blast SL	refseqs
virsi1362	gguguuuccauuccaugug	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	60	14645307	Blast SL	refseqs
virsi1361	ccuccagaugaggaagaag	SARS Coronavirus	Replicase Ia	FRhK-4	RNA	50	14645307	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm