VIRsiRNAdb

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Total number of Results for 16164410 are 9
Results from 0 - 25

siRNA sequence "acagccuguggguugaucc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "acagccuguggguugaucc" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1801 " record
Length: 19
GC Content:58 %
Starting position: 6
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "acagccuguggguugaucc" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "guaacacacaccgaucaac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guaacacacaccgaucaac" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1802 " record
Length: 19
GC Content:47 %
Starting position: 115
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "guaacacacaccgaucaac" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "ggagaaagcguucguuauc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggagaaagcguucguuauc" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1803 " record
Length: 19
GC Content:47 %
Starting position: 219
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggagaaagcguucguuauc" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "uacagacauggugcgaaga" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "uacagacauggugcgaaga" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1804 " record
Length: 19
GC Content:47 %
Starting position: 406
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uacagacauggugcgaaga" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "ccgacuacuuugggugucc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ccgacuacuuugggugucc" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1805 " record
Length: 19
GC Content:58 %
Starting position: 540
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ccgacuacuuugggugucc" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "cuaaggaccuaacaaaguu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cuaaggaccuaacaaaguu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1807 " record
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68

Offtargets for "cuaaggaccuaacaaaguu" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "guacaaaacuuuccaccua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacaaaacuuuccaccua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1806 " record
Length: 19
GC Content:37 %
Starting position: 6492
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68

Offtargets for "guacaaaacuuuccaccua" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "guacagggauaaacauuac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacagggauaaacauuac" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1809 " record
Length: 19
GC Content:37 %
Starting position: 6735
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68

Offtargets for "guacagggauaaacauuac" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "gcacgaauaugaggaguuc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcacgaauaugaggaguuc" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1808 " record
Length: 19
GC Content:47 %
Starting position: 7191
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):68

Offtargets for "gcacgaauaugaggaguuc" siRNA in Human Genome sequences
See M33854 at Genbank
Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1801	acagccuguggguugaucc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1802	guaacacacaccgaucaac	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1803	ggagaaagcguucguuauc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1804	uacagacauggugcgaaga	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1805	ccgacuacuuugggugucc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1807	cuaaggaccuaacaaaguu	Human Coxsackievirus [CV]	3D RdRp	COS-7	Viral Titer	89	16164410	Blast SL	refseqs
virsi1806	guacaaaacuuuccaccua	Human Coxsackievirus [CV]	3D RdRp	COS-7	Viral Titer	84	16164410	Blast SL	refseqs
virsi1809	guacagggauaaacauuac	Human Coxsackievirus [CV]	3D RdRp	COS-7	Viral Titer	78	16164410	Blast SL	refseqs
virsi1808	gcacgaauaugaggaguuc	Human Coxsackievirus [CV]	3D RdRp	COS-7	Viral Titer	73	16164410	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm