VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
16611884
are
4
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi2168
uccauaugcuguaugugau
Human Papillomavirus [HPV]
E7
CaSki
mRNA
Low
16611884
Blast
SL
refseqs
     
siRNA sequence "
uccauaugcuguaugugau
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
uccauaugcuguaugugau
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi2168
" record
Length:
19
GC Content:
37 %
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
uccauaugcuguaugugau
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16611884
Article:
The E7 oncoprotein is translated from spliced E6*I transcripts in high-risk human papillomavirus type 16- or type 18-positive cervical cancer cell lines via translation reinitiation.
Authors:
Tang S, Tao M, McCoy JP Jr, Zheng ZM.
Journal:
J Virol. 2006 May;80(9):4249-63.
Entrez:
16611884
virsi2167
gcacacacguagacauucg
Human Papillomavirus [HPV]
E7
CaSki
Protein
High
16611884
Blast
SL
refseqs
     
siRNA sequence "
gcacacacguagacauucg
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
gcacacacguagacauucg
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi2167
" record
Length:
19
GC Content:
53 %
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
gcacacacguagacauucg
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16611884
Article:
The E7 oncoprotein is translated from spliced E6*I transcripts in high-risk human papillomavirus type 16- or type 18-positive cervical cancer cell lines via translation reinitiation.
Authors:
Tang S, Tao M, McCoy JP Jr, Zheng ZM.
Journal:
J Virol. 2006 May;80(9):4249-63.
Entrez:
16611884
virsi2169
cucuguguauggagacaca
Human Papillomavirus [HPV]
E6
CaSki
mRNA
High
16611884
Blast
SL
refseqs
     
siRNA sequence "
cucuguguauggagacaca
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
cucuguguauggagacaca
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi2169
" record
Length:
19
GC Content:
47 %
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
cucuguguauggagacaca
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16611884
Article:
The E7 oncoprotein is translated from spliced E6*I transcripts in high-risk human papillomavirus type 16- or type 18-positive cervical cancer cell lines via translation reinitiation.
Authors:
Tang S, Tao M, McCoy JP Jr, Zheng ZM.
Journal:
J Virol. 2006 May;80(9):4249-63.
Entrez:
16611884
virsi2170
uggaguuaaucaucaacau
Human Papillomavirus [HPV]
E6
CaSki
Protein
High
16611884
Blast
SL
refseqs
     
siRNA sequence "
uggaguuaaucaucaacau
" alignment with "
Human Papillomavirus [HPV]
" virus reference Genome sequences
siRNA sequence matching with "
uggaguuaaucaucaacau
"
Human Papillomavirus [HPV]
" Virus reference Genome sequences
Browse all the records for "
Human Papillomavirus [HPV]
" virus
Browse "
virsi2170
" record
Length:
19
GC Content:
32 %
GenBank Acc:
NC_001526
Transfection Reagent:
Oligofectamine
Incubation Time (Hours):
24
Offtargets for "
uggaguuaaucaucaacau
" siRNA in Human Genome sequences
See
NC_001526
at Genbank
Pubmed:
16611884
Article:
The E7 oncoprotein is translated from spliced E6*I transcripts in high-risk human papillomavirus type 16- or type 18-positive cervical cancer cell lines via translation reinitiation.
Authors:
Tang S, Tao M, McCoy JP Jr, Zheng ZM.
Journal:
J Virol. 2006 May;80(9):4249-63.
Entrez:
16611884
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm