VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
16872906
are
2
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1183
gacacugagacaccaauugac
Hepatitis C Virus [HCV]
NS5B
Huh-7
RNA
98
16872906
Blast
SL
refseqs
     
siRNA sequence "
gacacugagacaccaauugac
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
gacacugagacaccaauugac
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1183
" record
Length:
21
GC Content:
48 %
Starting position:
6367
Offtargets for "
gacacugagacaccaauugac
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
16872906
Article:
Simultaneous targeting of HCV replication and viral binding with a single lentiviral vector containing multiple RNA interference expression cassettes.
Authors:
Henry SD, van der Wegen P, Metselaar HJ, Tilanus HW, Scholte BJ, van der Laan LJ.
Journal:
Mol Ther. 2006 Oct;14(4):485-93. Epub 2006 Jul 26.
Entrez:
16872906
virsi1182
aggucucguagaccgugca
Hepatitis C Virus [HCV]
IRES
Huh-7
RNA
82
16872906
Blast
SL
refseqs
     
siRNA sequence "
aggucucguagaccgugca
" alignment with "
Hepatitis C Virus [HCV]
" virus reference Genome sequences
siRNA sequence matching with "
aggucucguagaccgugca
"
Hepatitis C Virus [HCV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis C Virus [HCV]
" virus
Browse "
virsi1182
" record
Length:
19
GC Content:
58 %
Starting position:
321
Offtargets for "
aggucucguagaccgugca
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
16872906
Article:
Simultaneous targeting of HCV replication and viral binding with a single lentiviral vector containing multiple RNA interference expression cassettes.
Authors:
Henry SD, van der Wegen P, Metselaar HJ, Tilanus HW, Scholte BJ, van der Laan LJ.
Journal:
Mol Ther. 2006 Oct;14(4):485-93. Epub 2006 Jul 26.
Entrez:
16872906
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm