VIRsiRNAdb

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Total number of Results for 19276448 are 5
Results from 0 - 25

siRNA sequence "gggaauccauaugcuguaugu" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gggaauccauaugcuguaugu" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1705 " record
Length: 21
GC Content:43 %
Starting position: 272
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Calcium Phosohate
Incubation Time (Hours):24

Offtargets for "gggaauccauaugcuguaugu" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:19276448
Article:E6 and e7 gene silencing and transformed phenotype of human papillomavirus 16-positive oropharyngeal cancer cells.
Authors:Rampias T, Sasaki C, Weinberger P, Psyrri A.
Journal:J Natl Cancer Inst. 2009 Mar 18;101(6):412-23. Epub 2009 Mar 10.
Entrez:19276448

siRNA sequence "aauguguguacugcaagcaac" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "aauguguguacugcaagcaac" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1707 " record
Length: 21
GC Content:43 %
Starting position: 189
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Calcium Phosohate
Incubation Time (Hours):24

Offtargets for "aauguguguacugcaagcaac" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:19276448
Article:E6 and e7 gene silencing and transformed phenotype of human papillomavirus 16-positive oropharyngeal cancer cells.
Authors:Rampias T, Sasaki C, Weinberger P, Psyrri A.
Journal:J Natl Cancer Inst. 2009 Mar 18;101(6):412-23. Epub 2009 Mar 10.
Entrez:19276448

siRNA sequence "ggacagagcccauuacaauau" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "ggacagagcccauuacaauau" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1708 " record
Length: 21
GC Content:43 %
Starting position: 702
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Calcium Phosohate
Incubation Time (Hours):24

Offtargets for "ggacagagcccauuacaauau" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:19276448
Article:E6 and e7 gene silencing and transformed phenotype of human papillomavirus 16-positive oropharyngeal cancer cells.
Authors:Rampias T, Sasaki C, Weinberger P, Psyrri A.
Journal:J Natl Cancer Inst. 2009 Mar 18;101(6):412-23. Epub 2009 Mar 10.
Entrez:19276448

siRNA sequence "gcccauuacaauauuguaacc" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "gcccauuacaauauuguaacc" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1709 " record
Length: 21
GC Content:38 %
Starting position: 709
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Calcium Phosohate
Incubation Time (Hours):24

Offtargets for "gcccauuacaauauuguaacc" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:19276448
Article:E6 and e7 gene silencing and transformed phenotype of human papillomavirus 16-positive oropharyngeal cancer cells.
Authors:Rampias T, Sasaki C, Weinberger P, Psyrri A.
Journal:J Natl Cancer Inst. 2009 Mar 18;101(6):412-23. Epub 2009 Mar 10.
Entrez:19276448

siRNA sequence "ggucgauguaugucuuguugc" alignment with "Human Papillomavirus [HPV]" virus reference Genome sequences
siRNA sequence matching with "ggucgauguaugucuuguugc" Human Papillomavirus [HPV]" Virus reference Genome sequences
Browse all the records for "Human Papillomavirus [HPV]" virus
Browse "virsi1706 " record
Length: 21
GC Content:48 %
Starting position: 503
Strain of Virus: HPV16
GenBank Acc: NC_001526
Transfection Reagent: Calcium Phosohate
Incubation Time (Hours):24

Offtargets for "ggucgauguaugucuuguugc" siRNA in Human Genome sequences
See NC_001526 at Genbank
Pubmed:19276448
Article:E6 and e7 gene silencing and transformed phenotype of human papillomavirus 16-positive oropharyngeal cancer cells.
Authors:Rampias T, Sasaki C, Weinberger P, Psyrri A.
Journal:J Natl Cancer Inst. 2009 Mar 18;101(6):412-23. Epub 2009 Mar 10.
Entrez:19276448


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1705	gggaauccauaugcuguaugu	Human Papillomavirus [HPV]	E6 / E7	147T	mRNA	Medium	19276448	Blast SL	refseqs
virsi1707	aauguguguacugcaagcaac	Human Papillomavirus [HPV]	E6 / E7	147T	mRNA	Medium	19276448	Blast SL	refseqs
virsi1708	ggacagagcccauuacaauau	Human Papillomavirus [HPV]	E6 / E7	147T	mRNA	Medium	19276448	Blast SL	refseqs
virsi1709	gcccauuacaauauuguaacc	Human Papillomavirus [HPV]	E6 / E7	147T	mRNA	Medium	19276448	Blast SL	refseqs
virsi1706	ggucgauguaugucuuguugc	Human Papillomavirus [HPV]	E6 / E7	147T	mRNA	Low	19276448	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm