VIRsiRNAdb

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Total number of Results for 21073745 are 5
Results from 0 - 25

siRNA sequence "gacgggauaaauuucgcaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gacgggauaaauuucgcaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1980 " record
Length: 19
GC Content:42 %
Starting position: 817
Strain of Virus: Genotype 3a
GenBank Acc: D17763
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gacgggauaaauuucgcaa" siRNA in Human Genome sequences
See D17763 at Genbank
Pubmed:21073745
Article:Inhibition of core gene of HCV 3a genotype using synthetic and vector derived siRNAs.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Pervaiz A, Samreen B, Khan M, Hassan S.
Journal:Virol J. 2010 Nov 13;7:318.
Entrez:21073745

siRNA sequence "accucaaagaaaaaccaaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "accucaaagaaaaaccaaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1976 " record
Length: 19
GC Content:32 %
Starting position: 357
Strain of Virus: Genotype 3a
GenBank Acc: D17763
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "accucaaagaaaaaccaaa" siRNA in Human Genome sequences
See D17763 at Genbank
Pubmed:21073745
Article:Inhibition of core gene of HCV 3a genotype using synthetic and vector derived siRNAs.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Pervaiz A, Samreen B, Khan M, Hassan S.
Journal:Virol J. 2010 Nov 13;7:318.
Entrez:21073745

siRNA sequence "uuuggguaaagucaucgau" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uuuggguaaagucaucgau" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1979 " record
Length: 19
GC Content:37 %
Starting position: 693
Strain of Virus: Genotype 3a
GenBank Acc: D17763
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uuuggguaaagucaucgau" siRNA in Human Genome sequences
See D17763 at Genbank
Pubmed:21073745
Article:Inhibition of core gene of HCV 3a genotype using synthetic and vector derived siRNAs.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Pervaiz A, Samreen B, Khan M, Hassan S.
Journal:Virol J. 2010 Nov 13;7:318.
Entrez:21073745

siRNA sequence "accaaaagaaacaccaucc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "accaaaagaaacaccaucc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1977 " record
Length: 19
GC Content:42 %
Starting position: 370
Strain of Virus: Genotype 3a
GenBank Acc: D17763
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "accaaaagaaacaccaucc" siRNA in Human Genome sequences
See D17763 at Genbank
Pubmed:21073745
Article:Inhibition of core gene of HCV 3a genotype using synthetic and vector derived siRNAs.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Pervaiz A, Samreen B, Khan M, Hassan S.
Journal:Virol J. 2010 Nov 13;7:318.
Entrez:21073745

siRNA sequence "aacuucugaacggucacag" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aacuucugaacggucacag" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1978 " record
Length: 19
GC Content:47 %
Starting position: 492
Strain of Virus: Genotype 3a
GenBank Acc: D17763
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aacuucugaacggucacag" siRNA in Human Genome sequences
See D17763 at Genbank
Pubmed:21073745
Article:Inhibition of core gene of HCV 3a genotype using synthetic and vector derived siRNAs.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Pervaiz A, Samreen B, Khan M, Hassan S.
Journal:Virol J. 2010 Nov 13;7:318.
Entrez:21073745


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1980	gacgggauaaauuucgcaa	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	77	21073745	Blast SL	refseqs
virsi1976	accucaaagaaaaaccaaa	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	70	21073745	Blast SL	refseqs
virsi1979	uuuggguaaagucaucgau	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	61	21073745	Blast SL	refseqs
virsi1977	accaaaagaaacaccaucc	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	58	21073745	Blast SL	refseqs
virsi1978	aacuucugaacggucacag	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	38	21073745	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm