VIRsiRNAdb

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Total number of Results for 21161551 are 7
Results from 0 - 25

siRNA sequence "cauaucuaggugcuggacc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cauaucuaggugcuggacc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1965 " record
Length: 19
GC Content:53 %
Starting position: 129
Strain of Virus: 3a
GenBank Acc: FJ790798
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cauaucuaggugcuggacc" siRNA in Human Genome sequences
See FJ790798 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "guucaacucuacuggaugu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "guucaacucuacuggaugu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1968 " record
Length: 19
GC Content:42 %
Starting position: 189
Strain of Virus: 3a
GenBank Acc: HQ189126
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guucaacucuacuggaugu" siRNA in Human Genome sequences
See HQ189126 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "uacaccuccaccaaaacau" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uacaccuccaccaaaacau" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1971 " record
Length: 19
GC Content:42 %
Starting position: 938
Strain of Virus: 3a
GenBank Acc: HQ189126
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uacaccuccaccaaaacau" siRNA in Human Genome sequences
See HQ189126 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "caacugagcuugccauacu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "caacugagcuugccauacu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1970 " record
Length: 19
GC Content:47 %
Starting position: 875
Strain of Virus: 3a
GenBank Acc: HQ189126
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "caacugagcuugccauacu" siRNA in Human Genome sequences
See HQ189126 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "gccuucacauucagaccuc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gccuucacauucagaccuc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1966 " record
Length: 19
GC Content:53 %
Starting position: 295
Strain of Virus: 3a
GenBank Acc: FJ790798
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gccuucacauucagaccuc" siRNA in Human Genome sequences
See FJ790798 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "uggcuugggauaugaugau" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uggcuugggauaugaugau" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1967 " record
Length: 19
GC Content:42 %
Starting position: 550
Strain of Virus: 3a
GenBank Acc: FJ790798
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uggcuugggauaugaugau" siRNA in Human Genome sequences
See FJ790798 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551

siRNA sequence "cauccccugcugcauucaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cauccccugcugcauucaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1969 " record
Length: 19
GC Content:53 %
Starting position: 856
Strain of Virus: 3a
GenBank Acc: HQ189126
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cauccccugcugcauucaa" siRNA in Human Genome sequences
See HQ189126 at Genbank
Pubmed:21161551
Article:Inhibition of hepatitis C virus genotype 3a by siRNAs targeting envelope genes.
Authors:Khaliq S, Jahan S, Ijaz B, Ahmad W, Asad S, Hassan S.
Journal:Arch Virol. 2011 Mar;156(3):433-42. Epub 2010 Dec 16.
Entrez:21161551


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1965	cauaucuaggugcuggacc	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	83	21161551	Blast SL	refseqs
virsi1968	guucaacucuacuggaugu	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	75	21161551	Blast SL	refseqs
virsi1971	uacaccuccaccaaaacau	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	74	21161551	Blast SL	refseqs
virsi1970	caacugagcuugccauacu	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	73	21161551	Blast SL	refseqs
virsi1966	gccuucacauucagaccuc	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	70	21161551	Blast SL	refseqs
virsi1967	uggcuugggauaugaugau	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	60	21161551	Blast SL	refseqs
virsi1969	cauccccugcugcauucaa	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	55	21161551	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm