VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
virsi2319
are
1
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi2319
ugccgaacguggugggguucc
Semliki Forest Virus
Polyprotein
U4.4
Protein
56
21191029
Blast
SL
refseqs
     
siRNA sequence "
ugccgaacguggugggguucc
" alignment with "
Semliki Forest Virus
" virus reference Genome sequences
siRNA sequence matching with "
ugccgaacguggugggguucc
"
Semliki Forest Virus
" Virus reference Genome sequences
Browse all the records for "
Semliki Forest Virus
" virus
Browse "
virsi2319
" record
Length:
21
GC Content:
67 %
Strain of Virus:
SFV14
GenBank Acc:
AJ251359
Transfection Reagent:
Lipofectamine 2000
Incubation Time (Hours):
24
Offtargets for "
ugccgaacguggugggguucc
" siRNA in Human Genome sequences
See
AJ251359
at Genbank
Pubmed:
21191029
Article:
Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:
Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:
J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:
21191029
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm