Informatics related Resources Developed & Maintained by CSIR
Name | Description | Institute |
---|---|---|
FTG | A web server for locating probable protein coding region in nucleotide sequence using fourier tranform approach. | CSIR-IMTECH |
GWBLAST | A genome wide blast server. It allow user to search ther sequence against sequenced genomes and annonated proteomes. This integrate various tools which allows analysys of BLAST SEARCH. | CSIR-IMTECH |
GWFASTA | Genome Wise Sequence Similarity Search using FASTA. It allow user to search their sequence against sequenced genomes and their product proteome. This integrate various tools which allows analysys of FASTA search. | CSIR-IMTECH |
EGPred | This server allows to predict gene (protein coding regions) in eukaryote genomes that includes introns and exons, using similarity aided (double) and consensus Ab Intion methods. | CSIR-IMTECH |
SVMgene | It is a support vector based approach to identify the protein coding regions in human genomic DNA. | CSIR-IMTECH |
SRF | Spectral Repeat Finder (SRF) is a program to find repeats through an analysis of the power spectrum of a given DNA sequence. By repeat we mean the repeated occurrence of a segment of N nucleotides within a DNA sequence. SRF is an ab initio technique as no prior assumptions need to be made regarding either the repeat length, its fidelity, or whether the repeats are in tandem or not. | CSIR-IMTECH |
MyPattern | MyPattern Finder is a program for detection of a 'motif' in DNA sequence by using an exact search method (Option A (1.0)) or an alignment technique (Option B (1.0)). | CSIR-IMTECH |
GeneBench | A suite of datasets and tools for evaluating gene prediction methods. | CSIR-IMTECH |
FTGPred | A web server for predicting genes in a DNAsequence. | CSIR-IMTECH |
PHDcleav | Prediction of Human Dicer cleavage. | CSIR-IMTECH |
PolyApred | PolyApred is a support vector machine (SVM) based method for the prediction of polyadenylation signal (PAS) in human DNA sequence. | CSIR-IMTECH |
siRNAPred | Support vector machine based methods for predicting actual efficacy of both 21mer and 19mer siRNAs with high accuracy. | CSIR-IMTECH |
ECGPred | This server allows user to analsis the expresion data (Microarray Data) where it calculate correlation coefficient between level of gene expression and nucleotides composition of genes. | CSIR-IMTECH |
SGpred | This server allows user to identify and visulaze the genes which have different expression level in normal and disease conditions. | CSIR-IMTECH |
desiRam | A support vector machine model for predicting siRNA efficacy on existing datasets. | CSIR-IMTECH |
MARSpred | A prediction method MARSpred for discrimination between Mitochondrial-AARSs and Cytosolic-AARSs. | CSIR-IMTECH |
Icaars | Identification & Classification of Aminoacyl tRNA Synthetases. | CSIR-IMTECH |
TAREF | A tool to refine microRNA search. | CSIIR-IHBT |
FilteR | Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. | CSIIR-IHBT |
p-TAREF | A concurrent application for fast and accurate plant miRNA target identifications. | CSIIR-IHBT |
miR-BAG | An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. | CSIIR-IHBT |
miReader | Coming soon, a highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data. | CSIIR-IHBT |
FungalRV | To predict human pathogenic fungal adhesins and adhesin-like proteins. | CSIR-IGIB |
MalVac | Database of Malarial Vaccine Candidates (Version 1.1) | CSIR-IGIB |
MAAP | Prediction of Malaria Adhesin and Adhesin like proteins | CSIR-IGIB |
ARC | Automated Resource classifier | CSIR-IGIB |